Wall clock time and date at job start Fri Apr 10 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 111.00101 * 2 1 4 4 C 1.53001 * 109.46768 * 66.05157 * 3 2 1 5 5 N 1.46500 * 109.47185 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99678 * 269.99733 * 5 4 3 7 7 C 1.34775 * 120.00289 * 89.99290 * 5 4 3 8 8 O 1.21278 * 120.00040 * 355.35671 * 7 5 4 9 9 C 1.50694 * 119.99843 * 175.35367 * 7 5 4 10 10 H 1.09003 * 109.82524 * 50.60218 * 9 7 5 11 11 C 1.54384 * 109.83382 * 289.71492 * 9 7 5 12 12 C 1.55449 * 102.18771 * 219.18603 * 11 9 7 13 13 C 1.54940 * 100.99096 * 34.03542 * 12 11 9 14 14 O 1.43244 * 109.82971 * 171.48972 * 9 7 5 15 15 C 1.46905 * 110.99673 * 236.04922 * 2 1 3 16 16 C 1.50696 * 109.47175 * 293.95298 * 15 2 1 17 17 O 1.21290 * 119.99955 * 0.02562 * 16 15 2 18 18 N 1.34776 * 119.99862 * 180.02562 * 16 15 2 19 19 C 1.37096 * 119.99947 * 179.72649 * 18 16 15 20 20 H 1.08006 * 120.00115 * 0.26795 * 19 18 16 21 21 C 1.38949 * 120.00255 * 180.27514 * 19 18 16 22 22 N 1.31413 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00328 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47509 * 89.99689 * 23 21 19 25 25 H 1.48499 * 109.47362 * 209.99884 * 23 21 19 26 26 H 1.48501 * 109.47143 * 329.99798 * 23 21 19 27 27 H 1.08995 * 109.47285 * 183.94709 * 1 2 3 28 28 H 1.09000 * 109.47040 * 303.95129 * 1 2 3 29 29 H 1.09004 * 109.47313 * 63.94796 * 1 2 3 30 30 H 1.09001 * 109.46693 * 186.04520 * 3 2 1 31 31 H 1.08993 * 109.47342 * 306.05116 * 3 2 1 32 32 H 1.09008 * 109.46860 * 299.99875 * 4 3 2 33 33 H 1.08997 * 109.47512 * 59.99487 * 4 3 2 34 34 H 1.09001 * 109.46972 * 95.11510 * 6 5 4 35 35 H 1.08998 * 109.47139 * 215.12012 * 6 5 4 36 36 H 1.08998 * 109.47046 * 335.11861 * 6 5 4 37 37 H 1.08999 * 110.84507 * 337.32533 * 11 9 7 38 38 H 1.09002 * 110.84756 * 100.93879 * 11 9 7 39 39 H 1.09008 * 111.05395 * 276.12056 * 12 11 9 40 40 H 1.09001 * 111.14945 * 151.99439 * 12 11 9 41 41 H 1.09005 * 110.31101 * 204.69261 * 13 12 11 42 42 H 1.09003 * 110.39204 * 82.56851 * 13 12 11 43 43 H 1.09006 * 109.46699 * 173.95613 * 15 2 1 44 44 H 1.08997 * 109.47368 * 53.96124 * 15 2 1 45 45 H 0.97004 * 120.00142 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99968 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0574 1.3184 5 7 2.1560 3.4253 1.3182 6 6 3.5010 3.6941 1.8330 7 6 1.4013 4.4364 0.8444 8 8 0.3227 4.2037 0.3411 9 6 1.8976 5.8560 0.9400 10 1 2.9106 5.9210 0.5427 11 6 1.8822 6.3182 2.4130 12 6 1.3976 7.7901 2.2900 13 6 0.4262 7.6818 1.0878 14 8 1.0298 6.7249 0.2027 15 6 1.9954 -0.7660 -1.1377 16 6 1.6369 -2.2204 -0.9730 17 8 1.0046 -2.5831 -0.0036 18 7 2.0188 -3.1180 -1.9030 19 6 1.6974 -4.4420 -1.7504 20 1 1.1345 -4.7651 -0.8871 21 6 2.0961 -5.3684 -2.7062 22 7 2.7807 -4.9752 -3.7568 23 14 1.6589 -7.1725 -2.4980 24 1 0.3487 -7.4421 -3.1429 25 1 2.7057 -8.0121 -3.1339 26 1 1.5747 -7.4976 -1.0514 27 1 -0.3633 -1.0252 0.0707 28 1 -0.3633 0.5739 0.8525 29 1 -0.3634 0.4513 -0.9233 30 1 3.0798 1.3443 -0.1082 31 1 1.5611 1.9274 -0.8308 32 1 0.5472 2.0844 1.4266 33 1 2.0659 1.5014 2.1492 34 1 4.2117 3.7010 1.0066 35 1 3.5126 4.6639 2.3304 36 1 3.7795 2.9172 2.5451 37 1 1.1785 5.7260 2.9979 38 1 2.8821 6.2723 2.8445 39 1 2.2287 8.4585 2.0645 40 1 0.8735 8.1082 3.1912 41 1 0.3291 8.6475 0.5915 42 1 -0.5500 7.3276 1.4190 43 1 3.0797 -0.6611 -1.1757 44 1 1.5611 -0.3871 -2.0629 45 1 2.5241 -2.8278 -2.6785 46 1 3.0593 -5.6219 -4.4239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667533542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:43 Heat of formation + Delta-G solvation = -96.908982 kcal Electronic energy + Delta-G solvation = -26234.131618 eV Core-core repulsion = 22352.616397 eV Total energy + Delta-G solvation = -3881.515220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.81387 -38.94027 -38.40425 -36.63288 -35.49372 -33.81317 -32.65898 -31.23579 -30.94465 -29.20354 -27.62245 -26.99091 -25.43216 -24.34272 -23.05102 -22.28233 -21.09787 -19.51444 -19.07819 -17.97221 -17.79110 -16.96314 -16.46337 -16.17830 -15.98689 -15.33196 -15.24031 -14.76885 -14.56001 -14.24924 -14.01307 -13.90438 -13.69919 -13.38686 -13.33413 -13.16154 -12.84621 -12.68913 -12.36990 -12.09714 -12.02806 -11.93021 -11.66504 -11.50275 -11.47454 -11.25766 -11.17669 -10.88846 -10.72465 -10.55181 -10.36389 -10.18555 -9.53345 -9.44204 -8.95659 -8.38179 -7.94000 -7.79861 -6.38137 -3.78762 2.32589 2.59752 3.20302 3.28597 3.34613 3.46306 3.87194 3.95084 4.06429 4.15218 4.27095 4.34579 4.54458 4.64977 4.73613 4.86906 4.96537 5.02402 5.11935 5.15946 5.23041 5.23293 5.28617 5.29815 5.32338 5.40225 5.53894 5.56715 5.73212 5.79608 5.85950 5.94916 6.01699 6.12112 6.27515 6.33784 6.48749 6.65773 7.11606 7.31914 7.43812 7.58658 7.96703 8.10329 8.66052 9.21904 9.58662 10.10817 10.79729 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.041634 B = 0.002082 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.365694 B =13443.411521 C =13488.987064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.041 3.959 4 C 0.120 3.880 5 N -0.614 5.614 6 C 0.070 3.930 7 C 0.499 3.501 8 O -0.517 6.517 9 C 0.066 3.934 10 H 0.105 0.895 11 C -0.145 4.145 12 C -0.155 4.155 13 C 0.047 3.953 14 O -0.353 6.353 15 C 0.047 3.953 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 25.995 11.452 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.240 5.240 3 C -0.089 4.089 4 C -0.003 4.003 5 N -0.350 5.350 6 C -0.073 4.073 7 C 0.285 3.715 8 O -0.391 6.391 9 C 0.005 3.995 10 H 0.123 0.877 11 C -0.183 4.183 12 C -0.192 4.192 13 C -0.029 4.029 14 O -0.270 6.270 15 C -0.084 4.084 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.557 25.271 11.879 28.041 hybrid contribution 0.116 -0.367 -1.084 1.150 sum 2.673 24.904 10.795 27.274 Atomic orbital electron populations 1.22585 0.86601 1.04401 0.99128 1.61557 1.08893 1.10819 1.42778 1.22431 1.00101 0.89271 0.97069 1.21526 1.00749 0.79716 0.98262 1.47844 1.16578 1.07672 1.62941 1.22003 0.83046 1.02625 0.99664 1.21023 0.85181 0.87140 0.78138 1.90734 1.21850 1.84533 1.42025 1.22654 0.95202 0.88337 0.93314 0.87747 1.23176 1.03604 0.96780 0.94745 1.23314 1.00054 0.96262 0.99594 1.23484 0.96311 0.92868 0.90266 1.88537 1.61765 1.44746 1.31989 1.21863 1.00549 0.94118 0.91919 1.19724 0.85375 0.86609 0.85180 1.90475 1.43830 1.80159 1.31656 1.41868 1.49592 1.07317 1.21445 1.19697 1.32805 0.82188 1.08001 0.87916 1.25263 0.96876 1.00570 0.95358 1.69617 1.38065 1.35703 1.11030 0.85853 0.77971 0.81779 0.78650 1.20464 1.20969 1.19428 0.88535 0.92144 0.96543 0.90970 0.94680 0.89709 0.89288 0.92250 0.91092 0.90151 0.89836 0.88727 0.89869 0.89385 0.89132 0.91789 0.89496 0.93463 0.77503 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.01 60.06 0.54 0.91 16 2 N -0.52 -9.15 4.50 -244.37 -1.10 -10.25 16 3 C 0.04 0.58 5.28 -3.82 -0.02 0.56 16 4 C 0.12 1.49 5.34 -4.04 -0.02 1.46 16 5 N -0.61 -6.29 2.87 -181.57 -0.52 -6.81 16 6 C 0.07 0.41 9.99 59.85 0.60 1.01 16 7 C 0.50 6.14 6.87 -10.99 -0.08 6.07 16 8 O -0.52 -8.87 16.17 -13.97 -0.23 -9.09 16 9 C 0.07 0.59 3.08 -27.16 -0.08 0.51 16 10 H 0.10 0.72 7.70 -51.93 -0.40 0.32 16 11 C -0.15 -0.81 5.55 -24.71 -0.14 -0.95 16 12 C -0.15 -0.73 7.16 -24.41 -0.17 -0.91 16 13 C 0.05 0.36 7.78 38.18 0.30 0.65 16 14 O -0.35 -4.03 10.58 -54.76 -0.58 -4.61 16 15 C 0.05 0.89 5.45 -4.98 -0.03 0.86 16 16 C 0.45 10.81 7.51 -10.99 -0.08 10.72 16 17 O -0.58 -15.79 13.88 5.55 0.08 -15.71 16 18 N -0.57 -14.65 5.29 -10.96 -0.06 -14.70 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 23 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H 0.10 2.03 5.88 -51.93 -0.31 1.72 16 28 H 0.06 0.97 6.30 -51.93 -0.33 0.65 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 31 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.08 1.21 5.82 -51.92 -0.30 0.90 16 33 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.26 4.73 -51.93 -0.25 0.02 16 36 H 0.08 0.41 7.84 -51.93 -0.41 0.00 16 37 H 0.08 0.54 7.84 -51.93 -0.41 0.13 16 38 H 0.09 0.28 6.75 -51.93 -0.35 -0.07 16 39 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.47 7.93 -51.93 -0.41 1.06 16 44 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 45 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -35.63 370.46 -7.74 -43.37 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.19 Total: 7.27 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 0.57 Total: 12.83 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.96 Total: -55.96 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.73 Total: -29.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -7.74 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667533542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.534 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds