Wall clock time and date at job start Fri Apr 10 2020 18:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 119.99885 * 2 1 4 4 N 1.34778 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99941 * 175.01583 * 4 2 1 6 6 C 1.50700 * 110.01821 * 303.63541 * 5 4 2 7 7 O 1.21283 * 120.00032 * 145.34946 * 6 5 4 8 8 N 1.34777 * 119.99790 * 325.06990 * 6 5 4 9 9 C 1.46497 * 119.99647 * 175.05747 * 8 6 5 10 10 C 1.53008 * 109.47018 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.46356 * 60.00262 * 10 9 8 12 12 O 1.42899 * 109.47268 * 300.00431 * 10 9 8 13 13 C 1.53001 * 109.47185 * 180.02562 * 10 9 8 14 14 N 1.46501 * 109.46829 * 185.00323 * 13 10 9 15 15 C 1.36940 * 119.99350 * 179.97438 * 14 13 10 16 16 H 1.07997 * 120.00239 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99568 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99786 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00162 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46917 * 60.00336 * 19 17 15 21 21 H 1.48499 * 109.47462 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47046 * 300.00748 * 19 17 15 23 23 C 1.54269 * 110.03102 * 65.02857 * 5 4 2 24 24 C 1.54960 * 104.16207 * 95.75196 * 23 5 4 25 25 C 1.54890 * 102.77791 * 37.88857 * 24 23 5 26 26 C 1.53872 * 110.03260 * 182.23965 * 5 4 2 27 27 H 1.09004 * 109.47532 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47541 * 300.00660 * 1 2 3 29 29 H 1.09005 * 109.47015 * 59.99971 * 1 2 3 30 30 H 0.96994 * 119.99728 * 355.02006 * 4 2 1 31 31 H 0.97004 * 120.00112 * 355.06181 * 8 6 5 32 32 H 1.08992 * 109.47651 * 299.99913 * 9 8 6 33 33 H 1.09001 * 109.47343 * 60.00713 * 9 8 6 34 34 H 0.96702 * 113.99577 * 299.99864 * 12 10 9 35 35 H 1.08998 * 109.46726 * 305.00414 * 13 10 9 36 36 H 1.08998 * 109.46860 * 65.00368 * 13 10 9 37 37 H 0.97000 * 120.00013 * 359.97438 * 14 13 10 38 38 H 0.97002 * 119.99612 * 179.97438 * 18 17 15 39 39 H 1.09007 * 110.48114 * 214.40360 * 23 5 4 40 40 H 1.09006 * 110.48723 * 337.03853 * 23 5 4 41 41 H 1.08997 * 110.72012 * 279.57065 * 24 23 5 42 42 H 1.08997 * 110.92181 * 156.29586 * 24 23 5 43 43 H 1.08994 * 110.48553 * 203.40580 * 25 24 23 44 44 H 1.08992 * 110.48651 * 80.75859 * 25 24 23 45 45 H 1.09008 * 110.03442 * 359.95572 * 26 5 4 46 46 H 1.09005 * 110.03213 * 121.38107 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6417 -1.1697 -0.1097 6 6 4.0661 -0.4387 -1.3574 7 8 5.0893 0.2125 -1.3603 8 7 3.3115 -0.5132 -2.4716 9 6 3.6647 0.2825 -3.6499 10 6 2.6547 0.0146 -4.7676 11 1 1.6562 0.2907 -4.4287 12 8 2.6760 -1.3735 -5.1063 13 6 3.0239 0.8451 -5.9984 14 7 1.9922 0.6810 -7.0256 15 6 2.1087 1.3345 -8.2233 16 1 2.9611 1.9705 -8.4109 17 6 1.1315 1.1785 -9.1968 18 7 0.0929 0.4030 -8.9684 19 14 1.2905 2.0693 -10.8310 20 1 2.5419 1.6430 -11.5074 21 1 0.1255 1.7388 -11.6905 22 1 1.3304 3.5347 -10.5941 23 6 4.2664 -0.5016 1.1326 24 6 4.6073 -1.6876 2.0698 25 6 5.0911 -2.7774 1.0812 26 6 4.1654 -2.6161 -0.1422 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6986 -2.0056 0.0738 31 1 2.5346 -1.0936 -2.4934 32 1 3.6488 1.3412 -3.3915 33 1 4.6630 0.0061 -3.9891 34 1 3.5356 -1.6894 -5.4167 35 1 3.0948 1.8964 -5.7193 36 1 3.9834 0.5076 -6.3899 37 1 1.2268 0.1094 -6.8572 38 1 -0.5902 0.2943 -9.6485 39 1 5.1716 0.0409 0.8593 40 1 3.5486 0.1671 1.6077 41 1 3.7201 -2.0209 2.6083 42 1 5.4013 -1.4178 2.7661 43 1 4.9751 -3.7686 1.5193 44 1 6.1295 -2.6030 0.7994 45 1 3.3327 -3.3164 -0.0752 46 1 4.7265 -2.7895 -1.0606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667904055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:49 Heat of formation + Delta-G solvation = -120.755769 kcal Electronic energy + Delta-G solvation = -27114.773571 eV Core-core repulsion = 23232.224276 eV Total energy + Delta-G solvation = -3882.549295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18016 -39.03941 -37.96532 -37.13482 -34.54560 -34.08505 -33.71155 -31.33057 -30.58259 -29.35077 -28.91839 -27.72577 -25.37922 -22.94937 -21.90298 -21.68885 -21.40796 -20.56321 -19.53986 -18.03620 -17.18261 -17.15700 -16.55604 -16.00014 -15.92285 -15.76121 -15.22681 -15.04326 -14.49492 -14.34893 -14.21185 -13.84932 -13.62858 -13.46403 -13.06818 -12.98639 -12.65680 -12.61108 -12.35636 -12.25917 -11.93797 -11.81464 -11.62311 -11.57029 -11.31162 -10.97290 -10.93346 -10.80370 -10.63122 -10.31049 -10.21222 -10.03146 -9.82945 -9.59483 -9.17465 -9.03404 -8.89877 -6.94437 -5.76615 -3.06149 2.34249 2.50616 2.87571 3.14945 3.44299 3.48384 3.49627 4.11878 4.17028 4.46242 4.54512 4.56424 4.70415 4.81590 4.90241 4.92918 5.02026 5.08097 5.11063 5.17951 5.26092 5.29734 5.38923 5.51370 5.55712 5.58047 5.63831 5.66701 5.70154 5.86138 5.89957 5.96305 6.06931 6.17197 6.19746 6.45414 6.52622 6.67527 7.13291 7.50103 7.67954 7.90980 7.94038 8.20912 8.41629 9.53195 10.09456 10.45504 11.45781 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023385 B = 0.002747 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.065565 B =10191.733717 C =10637.093202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.527 6.527 4 N -0.725 5.725 5 C 0.157 3.843 6 C 0.523 3.477 7 O -0.534 6.534 8 N -0.715 5.715 9 C 0.090 3.910 10 C 0.091 3.909 11 H 0.103 0.897 12 O -0.553 6.553 13 C 0.127 3.873 14 N -0.725 5.725 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.119 4.119 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.404 0.596 31 H 0.402 0.598 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.373 0.627 35 H 0.029 0.971 36 H 0.023 0.977 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.364 -9.725 24.601 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.402 6.402 4 N -0.382 5.382 5 C 0.067 3.933 6 C 0.307 3.693 7 O -0.410 6.410 8 N -0.366 5.366 9 C -0.034 4.034 10 C 0.031 3.969 11 H 0.121 0.879 12 O -0.358 6.358 13 C -0.001 4.001 14 N -0.370 5.370 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.157 4.157 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.240 0.760 31 H 0.236 0.764 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.220 0.780 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.951 -8.305 24.591 26.424 hybrid contribution -0.332 -0.331 -1.141 1.234 sum 4.620 -8.637 23.450 25.413 Atomic orbital electron populations 1.21878 0.91192 1.04388 1.05688 1.20958 0.90793 0.83488 0.75285 1.90798 1.70434 1.31184 1.47781 1.46418 1.06011 1.09419 1.76355 1.21210 0.80917 0.96817 0.94359 1.20440 0.83754 0.80818 0.84299 1.90681 1.24844 1.41415 1.84069 1.45776 1.31215 1.46473 1.13136 1.22088 0.99355 0.96497 0.85471 1.22377 0.99149 0.82422 0.92960 0.87924 1.86560 1.37822 1.23890 1.87544 1.21196 0.93388 0.96869 0.88680 1.42224 1.24435 1.56987 1.13377 1.19184 1.05300 1.21426 0.91575 0.91255 1.24756 0.97144 1.00285 0.98667 1.69668 1.11862 1.41740 1.34665 0.86246 0.76856 0.79276 0.83664 1.21242 1.21639 1.21226 1.22674 1.02277 0.97675 0.92966 1.22529 1.01000 0.95152 0.97416 1.22355 0.99568 0.99276 0.94758 1.22387 1.00285 0.92488 1.00519 0.90445 0.88744 0.88224 0.76041 0.76361 0.90516 0.91109 0.78030 0.95344 0.95895 0.77763 0.93437 0.88838 0.90284 0.91508 0.90999 0.90949 0.90880 0.89969 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.39 36.00 0.37 -0.75 16 2 C 0.51 5.14 6.91 -10.99 -0.08 5.07 16 3 O -0.53 -8.03 14.87 5.56 0.08 -7.95 16 4 N -0.73 -5.54 4.49 -47.64 -0.21 -5.76 16 5 C 0.16 1.54 0.86 -131.85 -0.11 1.43 16 6 C 0.52 7.25 5.09 -10.98 -0.06 7.20 16 7 O -0.53 -9.46 15.58 5.56 0.09 -9.37 16 8 N -0.71 -9.21 5.06 -60.29 -0.31 -9.51 16 9 C 0.09 1.31 5.34 -4.04 -0.02 1.28 16 10 C 0.09 1.45 3.09 -26.73 -0.08 1.36 16 11 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 12 O -0.55 -8.70 13.03 -35.23 -0.46 -9.16 16 13 C 0.13 2.54 5.90 -4.04 -0.02 2.52 16 14 N -0.73 -18.60 5.55 -59.91 -0.33 -18.93 16 15 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 19 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 C -0.12 -1.24 5.55 -25.03 -0.14 -1.38 16 24 C -0.12 -0.88 6.91 -24.70 -0.17 -1.06 16 25 C -0.12 -0.79 6.83 -25.07 -0.17 -0.96 16 26 C -0.12 -0.84 6.24 -25.62 -0.16 -1.00 16 27 H 0.08 0.29 7.92 -51.93 -0.41 -0.13 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.40 1.68 7.92 -40.82 -0.32 1.35 16 31 H 0.40 4.54 7.82 -40.82 -0.32 4.23 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.37 4.88 9.04 45.56 0.41 5.29 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.58 7.67 -40.82 -0.31 10.27 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.09 1.22 6.80 -51.93 -0.35 0.87 16 40 H 0.08 0.94 6.63 -51.93 -0.34 0.60 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.38 7.45 -51.92 -0.39 -0.01 16 46 H 0.08 0.65 7.67 -51.93 -0.40 0.25 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -36.90 375.71 -7.30 -44.19 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.63 Total: 14.78 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.89 Total: 6.17 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.13 Total: -61.93 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.29 Total: -26.47 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.90 -7.30 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667904055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.562 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds