Wall clock time and date at job start Fri Apr 10 2020 18:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 119.99885 * 2 1 4 4 N 1.34778 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99941 * 175.01583 * 4 2 1 6 6 C 1.50700 * 110.01821 * 303.63541 * 5 4 2 7 7 O 1.21283 * 120.00032 * 145.34946 * 6 5 4 8 8 N 1.34777 * 119.99790 * 325.06990 * 6 5 4 9 9 C 1.46497 * 119.99647 * 175.05747 * 8 6 5 10 10 C 1.53008 * 109.47018 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.46356 * 60.00262 * 10 9 8 12 12 O 1.42899 * 109.47268 * 300.00431 * 10 9 8 13 13 C 1.53001 * 109.47185 * 180.02562 * 10 9 8 14 14 N 1.46501 * 109.46829 * 185.00323 * 13 10 9 15 15 C 1.36940 * 119.99350 * 179.97438 * 14 13 10 16 16 H 1.07997 * 120.00239 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99568 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99786 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00162 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46917 * 60.00336 * 19 17 15 21 21 H 1.48499 * 109.47462 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47046 * 300.00748 * 19 17 15 23 23 C 1.54269 * 110.03102 * 65.02857 * 5 4 2 24 24 C 1.54960 * 104.16207 * 95.75196 * 23 5 4 25 25 C 1.54890 * 102.77791 * 37.88857 * 24 23 5 26 26 C 1.53872 * 110.03260 * 182.23965 * 5 4 2 27 27 H 1.09004 * 109.47532 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47541 * 300.00660 * 1 2 3 29 29 H 1.09005 * 109.47015 * 59.99971 * 1 2 3 30 30 H 0.96994 * 119.99728 * 355.02006 * 4 2 1 31 31 H 0.97004 * 120.00112 * 355.06181 * 8 6 5 32 32 H 1.08992 * 109.47651 * 299.99913 * 9 8 6 33 33 H 1.09001 * 109.47343 * 60.00713 * 9 8 6 34 34 H 0.96702 * 113.99577 * 299.99864 * 12 10 9 35 35 H 1.08998 * 109.46726 * 305.00414 * 13 10 9 36 36 H 1.08998 * 109.46860 * 65.00368 * 13 10 9 37 37 H 0.97000 * 120.00013 * 359.97438 * 14 13 10 38 38 H 0.97002 * 119.99612 * 179.97438 * 18 17 15 39 39 H 1.09007 * 110.48114 * 214.40360 * 23 5 4 40 40 H 1.09006 * 110.48723 * 337.03853 * 23 5 4 41 41 H 1.08997 * 110.72012 * 279.57065 * 24 23 5 42 42 H 1.08997 * 110.92181 * 156.29586 * 24 23 5 43 43 H 1.08994 * 110.48553 * 203.40580 * 25 24 23 44 44 H 1.08992 * 110.48651 * 80.75859 * 25 24 23 45 45 H 1.09008 * 110.03442 * 359.95572 * 26 5 4 46 46 H 1.09005 * 110.03213 * 121.38107 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6417 -1.1697 -0.1097 6 6 4.0661 -0.4387 -1.3574 7 8 5.0893 0.2125 -1.3603 8 7 3.3115 -0.5132 -2.4716 9 6 3.6647 0.2825 -3.6499 10 6 2.6547 0.0146 -4.7676 11 1 1.6562 0.2907 -4.4287 12 8 2.6760 -1.3735 -5.1063 13 6 3.0239 0.8451 -5.9984 14 7 1.9922 0.6810 -7.0256 15 6 2.1087 1.3345 -8.2233 16 1 2.9611 1.9705 -8.4109 17 6 1.1315 1.1785 -9.1968 18 7 0.0929 0.4030 -8.9684 19 14 1.2905 2.0693 -10.8310 20 1 2.5419 1.6430 -11.5074 21 1 0.1255 1.7388 -11.6905 22 1 1.3304 3.5347 -10.5941 23 6 4.2664 -0.5016 1.1326 24 6 4.6073 -1.6876 2.0698 25 6 5.0911 -2.7774 1.0812 26 6 4.1654 -2.6161 -0.1422 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6986 -2.0056 0.0738 31 1 2.5346 -1.0936 -2.4934 32 1 3.6488 1.3412 -3.3915 33 1 4.6630 0.0061 -3.9891 34 1 3.5356 -1.6894 -5.4167 35 1 3.0948 1.8964 -5.7193 36 1 3.9834 0.5076 -6.3899 37 1 1.2268 0.1094 -6.8572 38 1 -0.5902 0.2943 -9.6485 39 1 5.1716 0.0409 0.8593 40 1 3.5486 0.1671 1.6077 41 1 3.7201 -2.0209 2.6083 42 1 5.4013 -1.4178 2.7661 43 1 4.9751 -3.7686 1.5193 44 1 6.1295 -2.6030 0.7994 45 1 3.3327 -3.3164 -0.0752 46 1 4.7265 -2.7895 -1.0606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667904055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:49 Heat of formation + Delta-G solvation = -152.614529 kcal Electronic energy + Delta-G solvation = -27116.155071 eV Core-core repulsion = 23232.224276 eV Total energy + Delta-G solvation = -3883.930794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08155 -40.08181 -39.14261 -38.14041 -36.13848 -35.49990 -34.61410 -33.23226 -31.39671 -30.52397 -29.79772 -28.53433 -27.02061 -24.66037 -22.92709 -22.81569 -22.51260 -21.25920 -20.51856 -19.30333 -18.90565 -18.00750 -17.71370 -17.24744 -16.92179 -16.72829 -16.46044 -16.07035 -15.95995 -15.60579 -15.38242 -15.13526 -14.85553 -14.60951 -14.29191 -14.14333 -13.90098 -13.60199 -13.31810 -13.22227 -12.98999 -12.96232 -12.73875 -12.70891 -12.35501 -12.22478 -12.13489 -12.03499 -11.95475 -11.85225 -11.58796 -11.30637 -11.03918 -10.97715 -10.89677 -10.20332 -10.11532 -9.04400 -7.96883 -5.26837 1.42032 1.46489 1.49620 1.55824 1.60579 1.98765 2.22275 2.54625 3.31772 3.38349 3.43555 3.46445 3.51887 3.73258 3.92281 3.93644 4.14850 4.18672 4.34592 4.35540 4.40934 4.48086 4.51676 4.53837 4.62993 4.66123 4.69227 4.76640 4.87810 4.93646 5.04304 5.12148 5.14157 5.17666 5.19744 5.29516 5.42094 5.44278 5.45858 6.24033 6.40496 6.54577 6.73486 7.12203 7.23914 7.31323 8.04627 8.29521 9.26053 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023385 B = 0.002747 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.065565 B =10191.733717 C =10637.093202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.501 3.499 3 O -0.586 6.586 4 N -0.705 5.705 5 C 0.160 3.840 6 C 0.515 3.485 7 O -0.580 6.580 8 N -0.706 5.706 9 C 0.102 3.898 10 C 0.115 3.885 11 H 0.097 0.903 12 O -0.557 6.557 13 C 0.124 3.876 14 N -0.738 5.738 15 C -0.253 4.253 16 H 0.074 0.926 17 C -0.073 4.073 18 N -0.966 5.966 19 Si 0.976 3.024 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.279 1.279 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.425 0.575 31 H 0.412 0.588 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.386 0.614 35 H 0.027 0.973 36 H 0.032 0.968 37 H 0.377 0.623 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.118 0.882 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -11.719 25.434 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.291 3.709 3 O -0.465 6.465 4 N -0.363 5.363 5 C 0.069 3.931 6 C 0.301 3.699 7 O -0.459 6.459 8 N -0.357 5.357 9 C -0.023 4.023 10 C 0.054 3.946 11 H 0.115 0.885 12 O -0.364 6.364 13 C -0.004 4.004 14 N -0.381 5.381 15 C -0.385 4.385 16 H 0.092 0.908 17 C -0.265 4.265 18 N -0.616 5.616 19 Si 0.804 3.196 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.205 1.205 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.156 4.156 26 C -0.152 4.152 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.266 0.734 31 H 0.248 0.752 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.235 0.765 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.210 0.790 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.136 0.864 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.526 -10.358 25.448 27.846 hybrid contribution -0.144 0.311 -1.348 1.391 sum 4.382 -10.048 24.100 26.476 Atomic orbital electron populations 1.21901 0.88165 1.06821 1.05620 1.21680 0.92271 0.83055 0.73929 1.90784 1.71808 1.33391 1.50539 1.46254 1.05088 1.09960 1.74996 1.21158 0.82142 0.98086 0.91687 1.21245 0.83023 0.80247 0.85365 1.90655 1.26933 1.43463 1.84871 1.45672 1.31366 1.46123 1.12549 1.21808 0.99007 0.95854 0.85627 1.21980 0.98995 0.82062 0.91515 0.88527 1.86539 1.39061 1.23231 1.87574 1.21374 0.92349 0.97607 0.89075 1.42374 1.25294 1.56573 1.13867 1.19595 1.05186 1.21088 0.92599 0.90779 1.25594 0.97087 1.01575 1.02268 1.69822 1.12686 1.43481 1.35645 0.85191 0.76815 0.78243 0.79362 1.20301 1.21885 1.20485 1.22610 1.00347 0.98715 0.94181 1.22511 1.02014 0.93639 0.96987 1.22368 0.98686 1.00353 0.94205 1.22452 1.01514 0.90764 1.00485 0.86778 0.87927 0.89076 0.73437 0.75185 0.92207 0.90782 0.76526 0.95466 0.94991 0.79013 0.93859 0.92223 0.92111 0.89507 0.90659 0.88072 0.92098 0.86364 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.39 71.23 0.74 -1.10 16 2 C 0.50 9.73 6.91 87.66 0.61 10.33 16 3 O -0.59 -18.43 14.87 -3.03 -0.05 -18.48 16 4 N -0.71 -9.35 4.49 -423.03 -1.90 -11.25 16 5 C 0.16 3.00 0.86 3.58 0.00 3.00 16 6 C 0.52 14.46 5.09 87.66 0.45 14.91 16 7 O -0.58 -21.51 15.58 -3.04 -0.05 -21.56 16 8 N -0.71 -17.92 5.06 -463.06 -2.34 -20.27 16 9 C 0.10 2.96 5.34 86.38 0.46 3.42 16 10 C 0.11 3.60 3.09 30.60 0.09 3.70 16 11 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 12 O -0.56 -16.79 13.03 -148.98 -1.94 -18.74 16 13 C 0.12 4.90 5.90 86.38 0.51 5.41 16 14 N -0.74 -37.91 5.55 -343.45 -1.91 -39.81 16 15 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 16 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 17 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 18 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 19 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 C -0.12 -2.57 5.55 31.69 0.18 -2.40 16 24 C -0.11 -1.43 6.91 31.91 0.22 -1.21 16 25 C -0.12 -1.23 6.83 31.67 0.22 -1.01 16 26 C -0.11 -1.32 6.24 31.32 0.20 -1.13 16 27 H 0.11 0.40 7.92 -2.38 -0.02 0.38 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.43 1.89 7.92 -92.71 -0.73 1.16 16 31 H 0.41 8.73 7.82 -92.71 -0.73 8.00 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.39 9.48 9.04 -74.06 -0.67 8.81 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.38 20.74 7.67 -92.71 -0.71 20.03 16 38 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.06 1.68 6.80 -2.38 -0.02 1.67 16 40 H 0.06 1.51 6.63 -2.38 -0.02 1.49 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.12 0.53 7.45 -2.38 -0.02 0.51 16 46 H 0.07 1.01 7.67 -2.38 -0.02 0.99 16 Total: -1.00 -82.81 375.71 -2.71 -85.52 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -1.81 Total: 38.64 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 4.97 Total: 16.68 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.87 Total: -130.51 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -2.03 Total: -58.77 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -82.81 -2.71 -85.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667904055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.097 kcal (2) G-P(sol) polarization free energy of solvation -82.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds