Wall clock time and date at job start Fri Apr 10 2020 18:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47442 * 2 1 4 4 C 1.53002 * 109.47490 * 239.99338 * 2 1 3 5 5 N 1.46908 * 109.46707 * 64.99796 * 4 2 1 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 2 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 2 11 11 C 1.50702 * 109.47205 * 119.99561 * 2 1 3 12 12 O 1.21279 * 120.00343 * 120.00077 * 11 2 1 13 13 N 1.34774 * 119.99806 * 300.00381 * 11 2 1 14 14 C 1.46499 * 120.00150 * 359.97438 * 13 11 2 15 15 C 1.46510 * 119.99812 * 180.02562 * 13 11 2 16 16 C 1.53000 * 109.46948 * 89.99774 * 15 13 11 17 17 C 1.53005 * 109.46463 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.46667 * 179.97438 * 17 16 15 19 19 C 1.36937 * 119.99739 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00294 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99568 * 180.02562 * 19 18 17 22 22 N 1.31612 * 120.00577 * 359.97438 * 21 19 18 23 23 Si 1.86812 * 119.99545 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46982 * 60.00394 * 23 21 19 25 25 H 1.48496 * 109.46768 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46946 * 299.99774 * 23 21 19 27 27 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46979 * 300.00300 * 1 2 3 29 29 H 1.08993 * 109.46790 * 60.00318 * 1 2 3 30 30 H 1.09003 * 109.46906 * 305.00311 * 4 2 1 31 31 H 1.08999 * 109.47302 * 184.99810 * 4 2 1 32 32 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 33 33 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 34 34 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 35 35 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 36 36 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 37 37 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 38 38 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 39 39 H 1.09003 * 109.54070 * 297.56443 * 10 5 4 40 40 H 1.08999 * 109.46609 * 90.00613 * 14 13 11 41 41 H 1.09000 * 109.47138 * 209.99926 * 14 13 11 42 42 H 1.08990 * 109.47351 * 330.00486 * 14 13 11 43 43 H 1.09000 * 109.46527 * 209.99926 * 15 13 11 44 44 H 1.08994 * 109.46784 * 329.99394 * 15 13 11 45 45 H 1.08994 * 109.47320 * 299.99761 * 16 15 13 46 46 H 1.08997 * 109.47198 * 60.00220 * 16 15 13 47 47 H 1.08994 * 109.47361 * 299.99986 * 17 16 15 48 48 H 1.08997 * 109.47029 * 60.00368 * 17 16 15 49 49 H 0.96998 * 120.00362 * 0.02562 * 18 17 16 50 50 H 0.97003 * 120.00294 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6514 0.0372 -2.4457 6 6 1.9365 1.4696 -2.2768 7 6 1.4635 2.2284 -3.5196 8 8 2.1000 1.6816 -4.6777 9 6 1.8423 0.2885 -4.8726 10 6 2.3201 -0.4902 -3.6441 11 6 2.0324 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1194 13 7 1.7067 -0.2498 2.4546 14 6 0.8648 0.9416 2.5889 15 6 2.1955 -0.9400 3.6509 16 6 3.5431 -0.3469 4.0669 17 6 4.0533 -1.0674 5.3166 18 7 5.3439 -0.4999 5.7147 19 6 5.9969 -0.9890 6.8145 20 1 5.5607 -1.7934 7.3882 21 6 7.2196 -0.4510 7.1920 22 7 7.7515 0.5289 6.4926 23 14 8.1107 -1.1187 8.6919 24 1 8.3995 -2.5619 8.4943 25 1 9.3848 -0.3797 8.8804 26 1 7.2558 -0.9448 9.8937 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.6054 -1.7199 -1.2950 31 1 3.1264 -0.7995 -1.2055 32 1 3.0092 1.6140 -2.1485 33 1 1.4105 1.8451 -1.3991 34 1 1.7249 3.2823 -3.4241 35 1 0.3824 2.1289 -3.6173 36 1 0.7723 0.1319 -5.0093 37 1 2.3771 -0.0605 -5.7560 38 1 2.0740 -1.5453 -3.7634 39 1 3.3991 -0.3777 -3.5388 40 1 -0.1832 0.6440 2.6221 41 1 1.1226 1.4669 3.5085 42 1 1.0286 1.6003 1.7361 43 1 1.4776 -0.8148 4.4614 44 1 2.3170 -2.0012 3.4338 45 1 4.2610 -0.4721 3.2564 46 1 3.4216 0.7143 4.2839 47 1 3.3353 -0.9418 6.1270 48 1 4.1747 -2.1287 5.1000 49 1 5.7356 0.2227 5.1997 50 1 8.6057 0.9051 6.7567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670345194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:58 Heat of formation + Delta-G solvation = -57.809747 kcal Electronic energy + Delta-G solvation = -26697.729379 eV Core-core repulsion = 22953.742723 eV Total energy + Delta-G solvation = -3743.986656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60821 -39.63873 -36.80128 -36.09077 -34.92148 -33.47795 -32.01906 -31.46751 -29.76381 -28.30288 -27.11034 -25.80192 -24.99650 -24.46058 -23.21625 -21.88311 -20.92208 -20.49900 -19.01229 -17.70216 -17.02637 -16.55368 -16.40899 -16.24422 -15.77514 -15.47311 -15.25606 -15.07591 -14.59653 -14.49629 -14.23617 -14.04201 -13.63192 -13.25898 -13.12459 -12.99242 -12.80138 -12.70244 -12.47297 -12.24768 -12.00889 -11.89145 -11.80032 -11.75733 -11.36387 -11.08093 -10.91929 -10.84327 -10.81747 -10.73162 -10.38908 -10.09396 -10.03154 -9.73761 -9.64598 -8.84086 -8.75597 -8.67254 -6.89396 -5.73498 -3.02256 2.57903 2.85532 3.39886 3.46204 3.49936 3.51491 3.54261 4.31081 4.37693 4.50575 4.61222 4.62311 4.66222 4.77491 4.83119 4.85806 4.91782 5.02608 5.12934 5.15257 5.24290 5.27022 5.34465 5.39742 5.40996 5.44933 5.46967 5.50585 5.58577 5.59544 5.64221 5.70424 5.77138 5.93067 5.94143 6.09509 6.31267 6.40199 6.52135 6.55307 6.55934 6.76131 6.87707 6.90380 7.31536 7.71906 8.12648 8.45461 9.56112 10.14787 10.49418 11.49589 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.002219 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.570046 B =12613.962500 C =13219.543149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 H 0.099 0.901 4 C 0.075 3.925 5 N -0.534 5.534 6 C 0.006 3.994 7 C 0.065 3.935 8 O -0.387 6.387 9 C 0.065 3.935 10 C 0.017 3.983 11 C 0.516 3.484 12 O -0.535 6.535 13 N -0.613 5.613 14 C 0.076 3.924 15 C 0.118 3.882 16 C -0.138 4.138 17 C 0.157 3.843 18 N -0.734 5.734 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.018 0.982 48 H 0.020 0.980 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.423 3.281 -21.276 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 H 0.117 0.883 4 C -0.053 4.053 5 N -0.259 5.259 6 C -0.122 4.122 7 C -0.012 4.012 8 O -0.305 6.305 9 C -0.012 4.012 10 C -0.111 4.111 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.346 5.346 14 C -0.067 4.067 15 C -0.004 4.004 16 C -0.177 4.177 17 C 0.028 3.972 18 N -0.378 5.378 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.036 0.964 48 H 0.038 0.962 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.400 2.707 -21.373 29.670 hybrid contribution 1.454 -0.079 1.128 1.842 sum -18.946 2.628 -20.245 27.852 Atomic orbital electron populations 1.21970 0.92121 1.03192 1.03237 1.21416 0.98622 1.00752 0.92754 0.88345 1.21918 0.99220 0.97293 0.86877 1.62310 1.58005 1.02502 1.03089 1.22959 1.00330 0.89206 0.99706 1.22672 0.97168 0.97376 0.84030 1.87994 1.73418 1.23718 1.45393 1.22657 1.00758 0.80986 0.96802 1.22791 0.97338 1.00220 0.90787 1.20532 0.80039 0.84643 0.84450 1.90728 1.37543 1.26443 1.86395 1.47859 1.51266 1.29325 1.06174 1.21969 0.94290 0.87262 1.03223 1.21501 0.95723 0.97686 0.85493 1.22048 0.96047 1.00268 0.99355 1.20541 0.88619 0.95511 0.92500 1.42348 1.19426 1.43005 1.32980 1.19208 1.00705 1.14080 1.03044 0.91187 1.24761 0.97953 0.98912 0.99541 1.69654 1.19487 1.28225 1.41035 0.86238 0.78999 0.78160 0.82628 1.21235 1.21678 1.21262 0.92192 0.91384 0.90699 0.89604 0.93452 0.93674 0.88991 0.88458 0.92263 0.92251 0.88449 0.89423 0.93642 0.92174 0.90692 0.91080 0.90488 0.89779 0.91688 0.92049 0.96397 0.96225 0.78348 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.52 37.16 0.32 -0.73 16 2 C -0.11 -1.06 1.40 -91.77 -0.13 -1.18 16 3 H 0.10 0.81 5.21 -51.93 -0.27 0.54 16 4 C 0.07 0.75 4.02 -3.82 -0.02 0.74 16 5 N -0.53 -4.52 4.34 -234.28 -1.02 -5.54 16 6 C 0.01 0.05 4.79 -3.70 -0.02 0.03 16 7 C 0.06 0.46 7.01 37.21 0.26 0.72 16 8 O -0.39 -3.58 10.83 -35.23 -0.38 -3.96 16 9 C 0.07 0.47 7.01 37.21 0.26 0.73 16 10 C 0.02 0.13 5.63 -3.71 -0.02 0.11 16 11 C 0.52 6.77 7.08 -10.99 -0.08 6.69 16 12 O -0.53 -9.31 15.50 5.56 0.09 -9.22 16 13 N -0.61 -7.23 2.87 -181.57 -0.52 -7.75 16 14 C 0.08 0.58 8.80 59.85 0.53 1.11 16 15 C 0.12 1.63 5.41 -4.04 -0.02 1.61 16 16 C -0.14 -2.38 5.65 -26.73 -0.15 -2.53 16 17 C 0.16 3.30 6.26 -4.04 -0.03 3.28 16 18 N -0.73 -19.62 5.60 -59.91 -0.34 -19.95 16 19 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.94 -29.18 13.06 55.49 0.72 -28.45 16 23 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.40 4.53 -51.93 -0.24 0.16 16 29 H 0.07 0.48 7.31 -51.93 -0.38 0.10 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.58 5.49 -51.93 -0.29 0.29 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.36 6.95 -51.93 -0.36 0.00 16 41 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 42 H 0.07 0.44 6.01 -51.93 -0.31 0.12 16 43 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 44 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.38 10.76 7.67 -40.82 -0.31 10.45 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -35.16 386.73 -8.81 -43.98 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.83 Total: 4.26 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 0.66 Total: 2.87 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.15 Total: -61.69 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.30 Total: -13.18 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.16 -8.81 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670345194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.835 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds