Wall clock time and date at job start Fri Apr 10 2020 18:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47442 * 2 1 4 4 C 1.53002 * 109.47490 * 239.99338 * 2 1 3 5 5 N 1.46908 * 109.46707 * 64.99796 * 4 2 1 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 2 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 2 11 11 C 1.50702 * 109.47205 * 119.99561 * 2 1 3 12 12 O 1.21279 * 120.00343 * 120.00077 * 11 2 1 13 13 N 1.34774 * 119.99806 * 300.00381 * 11 2 1 14 14 C 1.46499 * 120.00150 * 359.97438 * 13 11 2 15 15 C 1.46510 * 119.99812 * 180.02562 * 13 11 2 16 16 C 1.53000 * 109.46948 * 89.99774 * 15 13 11 17 17 C 1.53005 * 109.46463 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.46667 * 179.97438 * 17 16 15 19 19 C 1.36937 * 119.99739 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00294 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99568 * 180.02562 * 19 18 17 22 22 N 1.31612 * 120.00577 * 359.97438 * 21 19 18 23 23 Si 1.86812 * 119.99545 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46982 * 60.00394 * 23 21 19 25 25 H 1.48496 * 109.46768 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46946 * 299.99774 * 23 21 19 27 27 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46979 * 300.00300 * 1 2 3 29 29 H 1.08993 * 109.46790 * 60.00318 * 1 2 3 30 30 H 1.09003 * 109.46906 * 305.00311 * 4 2 1 31 31 H 1.08999 * 109.47302 * 184.99810 * 4 2 1 32 32 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 33 33 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 34 34 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 35 35 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 36 36 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 37 37 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 38 38 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 39 39 H 1.09003 * 109.54070 * 297.56443 * 10 5 4 40 40 H 1.08999 * 109.46609 * 90.00613 * 14 13 11 41 41 H 1.09000 * 109.47138 * 209.99926 * 14 13 11 42 42 H 1.08990 * 109.47351 * 330.00486 * 14 13 11 43 43 H 1.09000 * 109.46527 * 209.99926 * 15 13 11 44 44 H 1.08994 * 109.46784 * 329.99394 * 15 13 11 45 45 H 1.08994 * 109.47320 * 299.99761 * 16 15 13 46 46 H 1.08997 * 109.47198 * 60.00220 * 16 15 13 47 47 H 1.08994 * 109.47361 * 299.99986 * 17 16 15 48 48 H 1.08997 * 109.47029 * 60.00368 * 17 16 15 49 49 H 0.96998 * 120.00362 * 0.02562 * 18 17 16 50 50 H 0.97003 * 120.00294 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6514 0.0372 -2.4457 6 6 1.9365 1.4696 -2.2768 7 6 1.4635 2.2284 -3.5196 8 8 2.1000 1.6816 -4.6777 9 6 1.8423 0.2885 -4.8726 10 6 2.3201 -0.4902 -3.6441 11 6 2.0324 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1194 13 7 1.7067 -0.2498 2.4546 14 6 0.8648 0.9416 2.5889 15 6 2.1955 -0.9400 3.6509 16 6 3.5431 -0.3469 4.0669 17 6 4.0533 -1.0674 5.3166 18 7 5.3439 -0.4999 5.7147 19 6 5.9969 -0.9890 6.8145 20 1 5.5607 -1.7934 7.3882 21 6 7.2196 -0.4510 7.1920 22 7 7.7515 0.5289 6.4926 23 14 8.1107 -1.1187 8.6919 24 1 8.3995 -2.5619 8.4943 25 1 9.3848 -0.3797 8.8804 26 1 7.2558 -0.9448 9.8937 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.6054 -1.7199 -1.2950 31 1 3.1264 -0.7995 -1.2055 32 1 3.0092 1.6140 -2.1485 33 1 1.4105 1.8451 -1.3991 34 1 1.7249 3.2823 -3.4241 35 1 0.3824 2.1289 -3.6173 36 1 0.7723 0.1319 -5.0093 37 1 2.3771 -0.0605 -5.7560 38 1 2.0740 -1.5453 -3.7634 39 1 3.3991 -0.3777 -3.5388 40 1 -0.1832 0.6440 2.6221 41 1 1.1226 1.4669 3.5085 42 1 1.0286 1.6003 1.7361 43 1 1.4776 -0.8148 4.4614 44 1 2.3170 -2.0012 3.4338 45 1 4.2610 -0.4721 3.2564 46 1 3.4216 0.7143 4.2839 47 1 3.3353 -0.9418 6.1270 48 1 4.1747 -2.1287 5.1000 49 1 5.7356 0.2227 5.1997 50 1 8.6057 0.9051 6.7567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670345194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:58 Heat of formation + Delta-G solvation = -83.889827 kcal Electronic energy + Delta-G solvation = -26698.860296 eV Core-core repulsion = 22953.742723 eV Total energy + Delta-G solvation = -3745.117573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50145 -40.38495 -37.77292 -37.21948 -36.49179 -34.58199 -33.59766 -32.10926 -31.43398 -29.05845 -27.96330 -27.14739 -25.90837 -25.07008 -24.86267 -23.07708 -22.30654 -21.24672 -19.92223 -19.19107 -18.50999 -17.46880 -17.15845 -16.99964 -16.67971 -16.59844 -16.11873 -16.00634 -15.93100 -15.77466 -15.36615 -15.12478 -14.88148 -14.80251 -14.25495 -13.93415 -13.63015 -13.54959 -13.43355 -13.22221 -13.10729 -12.88528 -12.76798 -12.73081 -12.50696 -12.45278 -12.35371 -12.11612 -12.07978 -11.85395 -11.83342 -11.72183 -11.44927 -10.96922 -10.73393 -10.65611 -9.69534 -9.48336 -9.06477 -7.99167 -5.29605 1.44519 1.48971 1.54957 1.57346 1.93974 2.53478 2.70572 2.97466 3.34034 3.50902 3.63149 3.81965 3.87731 3.92661 4.02230 4.02741 4.16646 4.18846 4.25743 4.27183 4.31723 4.39034 4.49845 4.56558 4.59927 4.63810 4.67928 4.71695 4.72813 4.75213 4.81038 4.85303 4.87313 4.89920 5.00487 5.05816 5.07698 5.25344 5.26682 5.38814 5.44557 5.52616 5.81320 5.87978 6.19344 6.22668 6.37717 7.13162 7.28087 8.02992 8.26635 9.24569 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.002219 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.570046 B =12613.962500 C =13219.543149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.115 0.885 4 C 0.081 3.919 5 N -0.526 5.526 6 C 0.004 3.996 7 C 0.063 3.937 8 O -0.409 6.409 9 C 0.067 3.933 10 C 0.014 3.986 11 C 0.507 3.493 12 O -0.589 6.589 13 N -0.611 5.611 14 C 0.065 3.935 15 C 0.126 3.874 16 C -0.120 4.120 17 C 0.155 3.845 18 N -0.750 5.750 19 C -0.251 4.251 20 H 0.078 0.922 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.980 3.020 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.273 1.273 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.016 0.984 32 H 0.026 0.974 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.068 0.932 47 H 0.035 0.965 48 H 0.012 0.988 49 H 0.372 0.628 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.895 4.171 -20.986 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.133 0.867 4 C -0.048 4.048 5 N -0.251 5.251 6 C -0.124 4.124 7 C -0.013 4.013 8 O -0.328 6.328 9 C -0.010 4.010 10 C -0.114 4.114 11 C 0.296 3.704 12 O -0.469 6.469 13 N -0.343 5.343 14 C -0.076 4.076 15 C 0.003 3.997 16 C -0.159 4.159 17 C 0.028 3.972 18 N -0.392 5.392 19 C -0.383 4.383 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.808 3.192 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.198 1.198 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.046 0.954 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.030 0.970 49 H 0.203 0.797 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.943 3.607 -21.080 31.365 hybrid contribution 2.186 -0.365 1.004 2.433 sum -20.758 3.241 -20.077 29.060 Atomic orbital electron populations 1.21949 0.89715 1.03087 1.04864 1.21395 1.00310 1.00562 0.90165 0.86748 1.21776 0.97202 0.97459 0.88322 1.62367 1.57465 1.02897 1.02388 1.23061 0.99509 0.88692 1.01103 1.22820 0.97725 0.97897 0.82891 1.87965 1.74043 1.24588 1.46250 1.22745 1.01524 0.80096 0.96605 1.22861 0.96332 1.01023 0.91226 1.21274 0.79188 0.84144 0.85805 1.90703 1.40026 1.28999 1.87220 1.47953 1.51058 1.30195 1.05049 1.22324 0.94900 0.85886 1.04470 1.21306 0.94544 0.96572 0.87292 1.21851 0.97193 1.00439 0.96462 1.20708 0.86795 0.95159 0.94568 1.42608 1.21227 1.42900 1.32499 1.19655 1.01091 1.13968 1.03563 0.90432 1.25683 0.98988 0.99536 1.02892 1.69824 1.19774 1.29763 1.42924 0.85122 0.77458 0.77506 0.79139 1.20460 1.21946 1.19840 0.93197 0.89384 0.89349 0.90647 0.96599 0.95565 0.87059 0.87026 0.91000 0.91207 0.87164 0.88701 0.95423 0.89510 0.90200 0.89093 0.87373 0.91707 0.94778 0.91297 0.94661 0.96981 0.79692 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.52 71.98 0.61 -0.96 16 2 C -0.10 -1.79 1.40 -11.54 -0.02 -1.81 16 3 H 0.11 1.63 5.21 -2.39 -0.01 1.62 16 4 C 0.08 1.66 4.02 86.30 0.35 2.01 16 5 N -0.53 -8.56 4.34 -895.14 -3.88 -12.44 16 6 C 0.00 0.06 4.79 86.31 0.41 0.47 16 7 C 0.06 0.78 7.01 72.02 0.50 1.29 16 8 O -0.41 -7.12 10.83 -148.98 -1.61 -8.73 16 9 C 0.07 0.90 7.01 72.02 0.50 1.40 16 10 C 0.01 0.22 5.63 86.31 0.49 0.71 16 11 C 0.51 13.21 7.08 87.66 0.62 13.83 16 12 O -0.59 -21.52 15.50 -3.03 -0.05 -21.57 16 13 N -0.61 -13.48 2.87 -846.76 -2.43 -15.92 16 14 C 0.07 0.78 8.80 127.77 1.12 1.91 16 15 C 0.13 3.35 5.41 86.38 0.47 3.82 16 16 C -0.12 -4.16 5.65 30.60 0.17 -3.98 16 17 C 0.15 6.52 6.26 86.38 0.54 7.06 16 18 N -0.75 -40.66 5.60 -343.44 -1.92 -42.59 16 19 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 22 N -0.97 -61.61 13.06 21.65 0.28 -61.33 16 23 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.09 0.65 4.53 -2.39 -0.01 0.64 16 29 H 0.09 0.82 7.31 -2.39 -0.02 0.80 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.02 0.42 7.89 -2.39 -0.02 0.40 16 32 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.11 1.09 5.49 -2.39 -0.01 1.07 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.64 6.95 -2.39 -0.02 0.62 16 41 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 42 H 0.09 0.75 6.01 -2.39 -0.01 0.73 16 43 H 0.11 2.22 8.07 -2.39 -0.02 2.20 16 44 H 0.06 2.00 7.42 -2.39 -0.02 1.98 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 49 H 0.37 21.45 7.67 -92.71 -0.71 20.74 16 50 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -78.41 386.73 -0.30 -78.71 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.20 Total: 26.89 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 7.08 Total: 7.66 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -7.96 Total: -132.27 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.66 Total: -30.30 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -78.41 -0.30 -78.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670345194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.183 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds