Wall clock time and date at job start Fri Apr 10 2020 18:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46901 * 110.99975 * 293.94862 * 4 3 2 6 6 C 1.46903 * 110.99790 * 169.99915 * 4 3 2 7 7 C 1.52998 * 109.47073 * 189.99823 * 6 4 3 8 8 C 1.50704 * 109.47399 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99653 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00081 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47240 * 179.97438 * 11 10 8 13 13 O 1.42902 * 110.88824 * 61.11806 * 12 11 10 14 14 C 1.55161 * 111.00518 * 184.99185 * 12 11 10 15 15 C 1.54321 * 102.93938 * 153.57467 * 14 12 11 16 16 N 1.47025 * 107.27451 * 337.81137 * 15 14 12 17 17 C 1.36932 * 125.64874 * 178.96081 * 16 15 14 18 18 H 1.07998 * 120.00338 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00111 * 359.97226 * 17 16 15 20 20 N 1.31618 * 120.00365 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46996 * 60.00456 * 21 19 17 23 23 H 1.48501 * 109.47313 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47078 * 300.00335 * 21 19 17 25 25 C 1.47421 * 108.70109 * 358.93968 * 16 15 14 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 32 32 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 33 33 H 1.08999 * 109.46894 * 60.00348 * 5 4 3 34 34 H 1.09005 * 109.47342 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47121 * 300.00361 * 5 4 3 36 36 H 1.09005 * 109.47192 * 309.99470 * 6 4 3 37 37 H 1.08993 * 109.47271 * 69.99789 * 6 4 3 38 38 H 1.09002 * 109.47148 * 300.00269 * 7 6 4 39 39 H 1.09003 * 109.47179 * 59.99914 * 7 6 4 40 40 H 0.97002 * 119.99959 * 0.02562 * 10 8 7 41 41 H 1.09005 * 109.46884 * 299.99463 * 11 10 8 42 42 H 1.08993 * 109.47412 * 59.99680 * 11 10 8 43 43 H 0.96705 * 113.99955 * 300.70331 * 13 12 11 44 44 H 1.08994 * 110.72629 * 271.94411 * 14 12 11 45 45 H 1.09004 * 110.71766 * 35.04307 * 14 12 11 46 46 H 1.09005 * 109.88279 * 97.23129 * 15 14 12 47 47 H 1.09003 * 109.88376 * 218.23882 * 15 14 12 48 48 H 0.96992 * 120.00669 * 179.97438 * 20 19 17 49 49 H 1.09000 * 110.36508 * 265.28815 * 25 16 15 50 50 H 1.09003 * 110.36719 * 142.96547 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0359 0.8855 1.2524 6 6 4.0353 2.7931 -0.2388 7 6 5.5442 2.7171 -0.4804 8 6 6.0842 4.1026 -0.7254 9 8 5.3359 5.0569 -0.7080 10 7 7.3987 4.2813 -0.9628 11 6 7.9237 5.6282 -1.2004 12 6 9.4328 5.5524 -1.4408 13 8 9.7260 4.7584 -2.5922 14 6 10.0469 6.9712 -1.5726 15 6 11.5081 6.7582 -1.1241 16 7 11.5380 5.5435 -0.2963 17 6 12.6538 4.9981 0.2804 18 1 12.5707 4.0995 0.8737 19 6 13.8919 5.6002 0.1025 20 7 13.9933 6.6956 -0.6201 21 14 15.4141 4.8557 0.8887 22 1 15.6100 3.4750 0.3781 23 1 16.6006 5.6821 0.5501 24 1 15.2418 4.8184 2.3632 25 6 10.1678 5.0103 -0.1896 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.6864 -0.1403 1.3694 34 1 5.1256 0.8977 1.2256 35 1 3.6867 1.4863 2.0922 36 1 3.5485 3.2237 -1.1139 37 1 3.8378 3.4187 0.6315 38 1 6.0311 2.2865 0.3947 39 1 5.7418 2.0914 -1.3508 40 1 7.9973 3.5181 -0.9763 41 1 7.4371 6.0586 -2.0757 42 1 7.7258 6.2541 -0.3302 43 1 9.4043 3.8483 -2.5347 44 1 10.0069 7.3143 -2.6064 45 1 9.5373 7.6747 -0.9143 46 1 12.1485 6.6282 -1.9965 47 1 11.8456 7.6152 -0.5411 48 1 14.8583 7.1165 -0.7441 49 1 9.6888 5.3744 0.7192 50 1 10.1829 3.9204 -0.2011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672040041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:12 Heat of formation + Delta-G solvation = -63.781521 kcal Electronic energy + Delta-G solvation = -26428.000870 eV Core-core repulsion = 22683.755259 eV Total energy + Delta-G solvation = -3744.245611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04528 -38.66512 -37.99721 -35.12859 -34.13852 -34.02255 -32.14281 -31.12196 -29.57052 -28.21784 -27.53733 -26.05122 -25.18800 -23.55550 -22.04736 -21.04536 -20.60330 -20.09177 -19.79143 -17.72199 -16.92551 -16.45549 -16.29350 -15.90263 -15.56681 -15.30416 -14.81484 -14.70246 -14.57046 -14.23759 -13.96116 -13.65889 -13.43169 -13.28936 -13.08246 -12.85113 -12.43990 -12.32567 -12.17958 -12.07414 -11.92991 -11.83054 -11.71445 -11.28495 -11.15303 -11.00667 -10.91253 -10.88453 -10.72967 -10.35629 -10.22711 -10.14741 -9.83914 -9.72986 -9.42747 -9.09982 -8.69241 -8.59697 -6.84425 -5.72137 -3.05965 2.58417 3.00072 3.39497 3.43408 3.45218 3.66967 4.45993 4.48819 4.50412 4.58061 4.66922 4.74361 4.82980 4.95224 4.97295 5.04368 5.11431 5.13890 5.22732 5.30355 5.36737 5.38543 5.39462 5.51054 5.59280 5.63781 5.65859 5.69046 5.70958 5.80033 5.83154 5.91729 5.96226 6.16254 6.32368 6.35179 6.42820 6.54106 6.60181 6.69464 6.70728 7.39756 7.52165 7.63104 7.82646 7.97745 8.15221 8.24493 9.19856 9.80046 10.45349 11.39466 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.002207 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.268511 B =12682.031930 C =13520.016170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.545 5.545 5 C 0.016 3.984 6 C 0.071 3.929 7 C -0.139 4.139 8 C 0.515 3.485 9 O -0.545 6.545 10 N -0.726 5.726 11 C 0.104 3.896 12 C 0.102 3.898 13 O -0.536 6.536 14 C -0.128 4.128 15 C 0.182 3.818 16 N -0.598 5.598 17 C -0.231 4.231 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.118 3.882 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.399 0.601 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.363 0.637 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.253 0.747 49 H 0.026 0.974 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.762 -11.213 0.400 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.269 5.269 5 C -0.132 4.132 6 C -0.057 4.057 7 C -0.179 4.179 8 C 0.301 3.699 9 O -0.423 6.423 10 N -0.379 5.379 11 C -0.020 4.020 12 C 0.059 3.941 13 O -0.340 6.340 14 C -0.167 4.167 15 C 0.057 3.943 16 N -0.324 5.324 17 C -0.360 4.360 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.009 4.009 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.234 0.766 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.209 0.791 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.043 0.957 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.602 -10.177 -0.164 24.788 hybrid contribution 0.692 -0.725 1.311 1.650 sum -21.910 -10.902 1.147 24.499 Atomic orbital electron populations 1.21742 0.95636 1.01779 1.01831 1.21543 0.95371 0.96325 1.02694 1.22169 0.86810 0.97307 1.01020 1.61982 1.07778 1.22214 1.34929 1.22518 1.00921 1.00087 0.89699 1.21797 0.93491 0.88494 1.01917 1.21645 0.96953 0.94564 1.04725 1.20594 0.81969 0.91283 0.76084 1.90703 1.57387 1.43119 1.51083 1.46008 1.08730 1.10321 1.72806 1.22028 0.94196 0.83698 1.02100 1.22719 0.89980 0.94271 0.87089 1.86649 1.82165 1.25332 1.39890 1.22907 0.99743 0.92327 1.01707 1.21133 0.88829 0.89368 0.94977 1.44327 1.01223 1.27775 1.59077 1.18970 0.84668 1.07184 1.25141 0.90587 1.24810 0.97611 0.97689 1.00216 1.69944 1.23472 1.20259 1.43016 0.86187 0.82505 0.78180 0.78771 1.21165 1.21556 1.21203 1.22122 0.87983 0.96705 0.94115 0.92600 0.92523 0.92893 0.91082 0.91986 0.90688 0.94818 0.91094 0.91045 0.95548 0.89944 0.93903 0.88764 0.87918 0.76617 0.90833 0.90492 0.79106 0.90957 0.90945 0.93129 0.93788 0.93636 0.95679 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.76 5.86 -26.73 -0.16 -0.92 16 3 C 0.05 0.41 4.96 -3.82 -0.02 0.39 16 4 N -0.55 -4.55 4.76 -242.92 -1.16 -5.71 16 5 C 0.02 0.11 9.13 60.07 0.55 0.66 16 6 C 0.07 0.68 4.25 -3.82 -0.02 0.66 16 7 C -0.14 -1.21 5.63 -27.88 -0.16 -1.37 16 8 C 0.51 6.26 7.83 -10.99 -0.09 6.17 16 9 O -0.55 -8.72 15.98 5.56 0.09 -8.63 16 10 N -0.73 -8.42 5.18 -60.30 -0.31 -8.73 16 11 C 0.10 1.47 4.88 -4.05 -0.02 1.45 16 12 C 0.10 1.71 0.95 -88.47 -0.08 1.62 16 13 O -0.54 -9.13 13.19 -35.23 -0.46 -9.59 16 14 C -0.13 -2.41 6.16 -24.90 -0.15 -2.56 16 15 C 0.18 4.44 5.37 -3.06 -0.02 4.43 16 16 N -0.60 -15.10 3.39 -170.07 -0.58 -15.68 16 17 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 21 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 2.30 5.98 -2.53 -0.02 2.29 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.38 6.55 -51.93 -0.34 0.04 16 31 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 32 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 33 H 0.07 0.45 6.47 -51.93 -0.34 0.12 16 34 H 0.07 0.48 6.30 -51.93 -0.33 0.15 16 35 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 37 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.09 0.71 6.47 -51.93 -0.34 0.37 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 3.78 7.31 -40.82 -0.30 3.48 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 43 H 0.36 4.60 8.07 45.56 0.37 4.97 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 46 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 47 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.03 0.50 8.04 -51.93 -0.42 0.08 16 50 H 0.04 0.69 8.02 -51.93 -0.42 0.27 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -33.43 391.92 -9.33 -42.77 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.31 Total: 3.68 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.06 Total: 5.51 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -1.47 Total: -56.67 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.38 Total: -18.22 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.43 -9.33 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672040041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.016 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds