Wall clock time and date at job start Fri Apr 10 2020 18:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99985 * 2 1 4 4 C 1.34773 * 120.00235 * 179.97438 * 2 1 3 5 5 O 1.21283 * 119.99792 * 0.02562 * 4 2 1 6 6 C 1.50697 * 120.00179 * 179.97438 * 4 2 1 7 7 C 1.53004 * 109.47252 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47282 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47277 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00021 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00190 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00210 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47297 * 179.97438 * 12 11 9 14 14 O 1.42907 * 113.40879 * 313.20168 * 13 12 11 15 15 C 1.53495 * 114.20705 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98548 * 220.34462 * 15 13 12 17 17 C 1.36933 * 136.05515 * 207.08569 * 16 15 13 18 18 H 1.07994 * 120.00522 * 6.49943 * 17 16 15 19 19 C 1.38813 * 119.99615 * 186.49718 * 17 16 15 20 20 N 1.31621 * 119.99986 * 6.13435 * 19 17 16 21 21 Si 1.86800 * 119.99906 * 186.40574 * 19 17 16 22 22 H 1.48501 * 109.47119 * 264.74574 * 21 19 17 23 23 H 1.48504 * 109.47233 * 24.74441 * 21 19 17 24 24 H 1.48503 * 109.47248 * 144.74737 * 21 19 17 25 25 C 1.47066 * 87.88243 * 27.34326 * 16 15 13 26 26 H 1.08994 * 109.46823 * 269.99923 * 1 2 3 27 27 H 1.08998 * 109.47073 * 30.00023 * 1 2 3 28 28 H 1.09001 * 109.46690 * 150.00203 * 1 2 3 29 29 H 1.09005 * 109.47240 * 270.00462 * 3 2 1 30 30 H 1.09005 * 109.47143 * 30.00232 * 3 2 1 31 31 H 1.08996 * 109.47267 * 150.00183 * 3 2 1 32 32 H 1.08995 * 109.47334 * 60.00028 * 6 4 2 33 33 H 1.09007 * 109.47131 * 300.00128 * 6 4 2 34 34 H 1.08996 * 109.46834 * 60.00024 * 7 6 4 35 35 H 1.08998 * 109.46722 * 299.99888 * 7 6 4 36 36 H 1.09001 * 109.46959 * 59.99517 * 8 7 6 37 37 H 1.09004 * 109.46841 * 300.00253 * 8 7 6 38 38 H 0.97002 * 119.99901 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46914 * 60.00291 * 12 11 9 40 40 H 1.08994 * 109.47449 * 299.99888 * 12 11 9 41 41 H 0.96691 * 114.00080 * 46.80502 * 14 13 12 42 42 H 1.09003 * 113.46642 * 105.56186 * 15 13 12 43 43 H 1.08991 * 113.52338 * 335.13845 * 15 13 12 44 44 H 0.97003 * 119.99732 * 180.27038 * 20 19 17 45 45 H 1.08993 * 113.46844 * 87.44082 * 25 16 15 46 46 H 1.09005 * 113.46768 * 217.87931 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1671 -0.0001 7 6 4.1559 -2.6096 0.0001 8 6 5.6860 -2.6096 0.0001 9 6 6.1883 -4.0304 0.0009 10 8 5.4002 -4.9523 0.0018 11 7 7.5134 -4.2767 0.0016 12 6 8.0018 -5.6578 0.0029 13 6 9.5318 -5.6578 0.0028 14 8 10.0995 -4.7610 -0.9541 15 6 10.1612 -7.0578 0.0035 16 7 11.1617 -6.5508 0.9547 17 6 12.4553 -6.8582 1.2821 18 1 13.0000 -7.5889 0.7029 19 6 13.0666 -6.2303 2.3588 20 7 12.3685 -5.4313 3.1376 21 14 14.8816 -6.5135 2.6976 22 1 15.0345 -7.5949 3.7038 23 1 15.5645 -6.9080 1.4393 24 1 15.4888 -5.2627 3.2192 25 6 10.1593 -5.5729 1.4039 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3791 1.5835 -1.0277 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0096 -0.6527 0.8894 33 1 4.0089 -0.6538 -0.8906 34 1 3.7923 -3.1236 -0.8896 35 1 3.7930 -3.1232 0.8903 36 1 6.0492 -2.0957 0.8900 37 1 6.0493 -2.0958 -0.8899 38 1 8.1437 -3.5394 0.0012 39 1 7.6388 -6.1724 -0.8869 40 1 7.6382 -6.1710 0.8931 41 1 9.7009 -3.8800 -0.9523 42 1 10.5838 -7.3442 -0.9596 43 1 9.5126 -7.8261 0.4241 44 1 12.7966 -4.9895 3.8876 45 1 9.5096 -5.9491 2.1940 46 1 10.5804 -4.5941 1.6339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672133308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:17 Heat of formation + Delta-G solvation = -60.900017 kcal Electronic energy + Delta-G solvation = -25602.765368 eV Core-core repulsion = 21722.811614 eV Total energy + Delta-G solvation = -3879.953755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28182 -39.82927 -38.70420 -35.95242 -35.06513 -34.50377 -33.93810 -32.05235 -30.06998 -28.67979 -27.86691 -26.45810 -25.56563 -24.78138 -22.69478 -21.71974 -20.37769 -19.56071 -19.39214 -17.78884 -17.13224 -16.72533 -16.66309 -16.28928 -16.01635 -15.79328 -15.36644 -14.79427 -14.57761 -14.03321 -13.97746 -13.64131 -13.59499 -13.35915 -13.16232 -13.07064 -12.92425 -12.79927 -12.58164 -12.25371 -12.18277 -12.12965 -11.77200 -11.61504 -11.16372 -10.97585 -10.86461 -10.74091 -10.45086 -10.17432 -10.01271 -9.70937 -9.49741 -9.15897 -9.12144 -8.86491 -8.81982 -6.91642 -5.80679 -3.10812 2.31392 2.58537 2.70117 3.20251 3.38654 3.43691 3.46224 4.14335 4.42760 4.45545 4.52978 4.57268 4.70817 4.77754 4.82008 4.87049 4.99260 5.08521 5.11412 5.18302 5.20869 5.21705 5.30592 5.32356 5.39058 5.44323 5.59788 5.77466 5.92425 5.99175 6.05050 6.20408 6.31918 6.41911 6.52688 6.56362 6.91391 7.00525 7.07072 7.46007 7.49961 7.83450 7.92896 8.08741 8.28545 9.00971 9.67496 10.59523 11.38338 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.001983 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.414008 B =14114.440872 C =14575.372094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.629 5.629 3 C 0.077 3.923 4 C 0.510 3.490 5 O -0.532 6.532 6 C -0.139 4.139 7 C -0.090 4.090 8 C -0.142 4.142 9 C 0.511 3.489 10 O -0.539 6.539 11 N -0.727 5.727 12 C 0.108 3.892 13 C 0.056 3.944 14 O -0.522 6.522 15 C 0.133 3.867 16 N -0.599 5.599 17 C -0.213 4.213 18 H 0.083 0.917 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.279 1.279 24 H -0.290 1.290 25 C 0.144 3.856 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.397 0.603 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.359 0.641 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.253 0.747 45 H 0.037 0.963 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.864 16.940 -7.250 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.364 5.364 3 C -0.066 4.066 4 C 0.299 3.701 5 O -0.408 6.408 6 C -0.179 4.179 7 C -0.128 4.128 8 C -0.182 4.182 9 C 0.297 3.703 10 O -0.415 6.415 11 N -0.380 5.380 12 C -0.017 4.017 13 C 0.013 3.987 14 O -0.325 6.325 15 C 0.006 3.994 16 N -0.324 5.324 17 C -0.341 4.341 18 H 0.100 0.900 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.205 1.205 24 H -0.216 1.216 25 C 0.018 3.982 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.205 0.795 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.038 15.179 -7.192 26.146 hybrid contribution 0.926 0.905 0.566 1.413 sum -19.111 16.084 -6.626 25.843 Atomic orbital electron populations 1.21629 0.79286 1.03090 1.01856 1.47824 1.07172 1.06580 1.74808 1.21838 0.97494 0.85229 1.02056 1.20837 0.90591 0.83031 0.75675 1.90742 1.70444 1.30913 1.48702 1.21737 0.91582 1.00235 1.04340 1.21087 0.92418 0.94056 1.05275 1.21688 0.97532 0.94396 1.04548 1.20617 0.82066 0.91609 0.75962 1.90732 1.55165 1.46544 1.49083 1.45982 1.07089 1.09271 1.75683 1.21911 0.94234 0.82678 1.02900 1.23472 0.87858 0.94363 0.93005 1.86645 1.63050 1.24350 1.58477 1.22387 0.90795 0.91192 0.95050 1.45372 1.07893 1.36985 1.42188 1.18930 0.84746 1.20588 1.09786 0.89972 1.24817 0.98570 1.00317 0.96828 1.69843 1.34756 1.33914 1.18374 0.86060 0.84373 0.77124 0.77970 1.21611 1.20464 1.21607 1.22684 0.89064 0.96066 0.90428 0.92779 0.91331 0.90490 0.92387 0.90966 0.90593 0.88654 0.88732 0.90364 0.90301 0.88631 0.88768 0.76819 0.91107 0.90208 0.79453 0.93049 0.93325 0.93678 0.94488 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.44 59.85 0.62 1.14 16 2 N -0.63 -4.41 3.27 -189.52 -0.62 -5.03 16 3 C 0.08 0.24 10.24 59.85 0.61 0.86 16 4 C 0.51 4.98 7.67 -10.99 -0.08 4.90 16 5 O -0.53 -7.67 15.56 5.55 0.09 -7.58 16 6 C -0.14 -0.93 4.25 -27.88 -0.12 -1.05 16 7 C -0.09 -0.89 3.79 -26.73 -0.10 -0.99 16 8 C -0.14 -1.16 5.70 -27.88 -0.16 -1.32 16 9 C 0.51 6.59 7.83 -10.99 -0.09 6.51 16 10 O -0.54 -9.37 15.98 5.55 0.09 -9.28 16 11 N -0.73 -8.94 5.34 -60.30 -0.32 -9.26 16 12 C 0.11 1.64 5.43 -4.04 -0.02 1.62 16 13 C 0.06 1.02 1.74 -89.97 -0.16 0.86 16 14 O -0.52 -9.28 13.56 -35.23 -0.48 -9.76 16 15 C 0.13 2.78 8.10 -8.52 -0.07 2.71 16 16 N -0.60 -15.62 3.76 -184.61 -0.70 -16.31 16 17 C -0.21 -6.09 10.73 -15.06 -0.16 -6.25 16 18 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.43 11.80 55.49 0.65 -26.78 16 21 Si 0.91 22.30 29.56 -169.99 -5.02 17.28 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.14 3.30 6.66 -8.38 -0.06 3.24 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 28 H 0.08 0.61 7.42 -51.93 -0.39 0.22 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.14 8.07 -51.93 -0.42 -0.28 16 31 H 0.08 0.16 6.44 -51.93 -0.33 -0.18 16 32 H 0.10 0.44 7.40 -51.93 -0.38 0.05 16 33 H 0.09 0.42 8.11 -51.92 -0.42 0.00 16 34 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 35 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 3.85 6.95 -40.82 -0.28 3.57 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.30 7.89 -51.93 -0.41 0.89 16 41 H 0.36 4.56 7.21 45.56 0.33 4.89 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.04 0.87 7.93 -51.93 -0.41 0.46 16 46 H 0.06 1.62 7.57 -51.93 -0.39 1.23 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -39.04 380.52 -7.32 -46.36 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.87 Total: 2.77 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 0.13 Total: 11.86 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.98 Total: -57.38 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.30 Total: -26.62 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.04 -7.32 -46.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672133308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.543 kcal (2) G-P(sol) polarization free energy of solvation -39.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds