Wall clock time and date at job start Fri Apr 10 2020 18:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99985 * 2 1 4 4 C 1.34773 * 120.00235 * 179.97438 * 2 1 3 5 5 O 1.21283 * 119.99792 * 0.02562 * 4 2 1 6 6 C 1.50697 * 120.00179 * 179.97438 * 4 2 1 7 7 C 1.53004 * 109.47252 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47282 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47277 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00021 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00190 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00210 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47297 * 179.97438 * 12 11 9 14 14 O 1.42907 * 113.40879 * 313.20168 * 13 12 11 15 15 C 1.53495 * 114.20705 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98548 * 220.34462 * 15 13 12 17 17 C 1.36933 * 136.05515 * 207.08569 * 16 15 13 18 18 H 1.07994 * 120.00522 * 6.49943 * 17 16 15 19 19 C 1.38813 * 119.99615 * 186.49718 * 17 16 15 20 20 N 1.31621 * 119.99986 * 6.13435 * 19 17 16 21 21 Si 1.86800 * 119.99906 * 186.40574 * 19 17 16 22 22 H 1.48501 * 109.47119 * 264.74574 * 21 19 17 23 23 H 1.48504 * 109.47233 * 24.74441 * 21 19 17 24 24 H 1.48503 * 109.47248 * 144.74737 * 21 19 17 25 25 C 1.47066 * 87.88243 * 27.34326 * 16 15 13 26 26 H 1.08994 * 109.46823 * 269.99923 * 1 2 3 27 27 H 1.08998 * 109.47073 * 30.00023 * 1 2 3 28 28 H 1.09001 * 109.46690 * 150.00203 * 1 2 3 29 29 H 1.09005 * 109.47240 * 270.00462 * 3 2 1 30 30 H 1.09005 * 109.47143 * 30.00232 * 3 2 1 31 31 H 1.08996 * 109.47267 * 150.00183 * 3 2 1 32 32 H 1.08995 * 109.47334 * 60.00028 * 6 4 2 33 33 H 1.09007 * 109.47131 * 300.00128 * 6 4 2 34 34 H 1.08996 * 109.46834 * 60.00024 * 7 6 4 35 35 H 1.08998 * 109.46722 * 299.99888 * 7 6 4 36 36 H 1.09001 * 109.46959 * 59.99517 * 8 7 6 37 37 H 1.09004 * 109.46841 * 300.00253 * 8 7 6 38 38 H 0.97002 * 119.99901 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46914 * 60.00291 * 12 11 9 40 40 H 1.08994 * 109.47449 * 299.99888 * 12 11 9 41 41 H 0.96691 * 114.00080 * 46.80502 * 14 13 12 42 42 H 1.09003 * 113.46642 * 105.56186 * 15 13 12 43 43 H 1.08991 * 113.52338 * 335.13845 * 15 13 12 44 44 H 0.97003 * 119.99732 * 180.27038 * 20 19 17 45 45 H 1.08993 * 113.46844 * 87.44082 * 25 16 15 46 46 H 1.09005 * 113.46768 * 217.87931 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1671 -0.0001 7 6 4.1559 -2.6096 0.0001 8 6 5.6860 -2.6096 0.0001 9 6 6.1883 -4.0304 0.0009 10 8 5.4002 -4.9523 0.0018 11 7 7.5134 -4.2767 0.0016 12 6 8.0018 -5.6578 0.0029 13 6 9.5318 -5.6578 0.0028 14 8 10.0995 -4.7610 -0.9541 15 6 10.1612 -7.0578 0.0035 16 7 11.1617 -6.5508 0.9547 17 6 12.4553 -6.8582 1.2821 18 1 13.0000 -7.5889 0.7029 19 6 13.0666 -6.2303 2.3588 20 7 12.3685 -5.4313 3.1376 21 14 14.8816 -6.5135 2.6976 22 1 15.0345 -7.5949 3.7038 23 1 15.5645 -6.9080 1.4393 24 1 15.4888 -5.2627 3.2192 25 6 10.1593 -5.5729 1.4039 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3791 1.5835 -1.0277 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0096 -0.6527 0.8894 33 1 4.0089 -0.6538 -0.8906 34 1 3.7923 -3.1236 -0.8896 35 1 3.7930 -3.1232 0.8903 36 1 6.0492 -2.0957 0.8900 37 1 6.0493 -2.0958 -0.8899 38 1 8.1437 -3.5394 0.0012 39 1 7.6388 -6.1724 -0.8869 40 1 7.6382 -6.1710 0.8931 41 1 9.7009 -3.8800 -0.9523 42 1 10.5838 -7.3442 -0.9596 43 1 9.5126 -7.8261 0.4241 44 1 12.7966 -4.9895 3.8876 45 1 9.5096 -5.9491 2.1940 46 1 10.5804 -4.5941 1.6339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672133308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:17 Heat of formation + Delta-G solvation = -93.393606 kcal Electronic energy + Delta-G solvation = -25604.174396 eV Core-core repulsion = 21722.811614 eV Total energy + Delta-G solvation = -3881.362782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24885 -40.84603 -40.10278 -36.63321 -36.54050 -35.32765 -35.14947 -34.08677 -30.97633 -29.95631 -28.58033 -27.62972 -26.61576 -26.42016 -24.04967 -22.94332 -21.41160 -20.99639 -20.16170 -19.02852 -18.47969 -17.81956 -17.35694 -17.30488 -17.11652 -16.87013 -16.57900 -16.23472 -15.82499 -15.45839 -15.37645 -14.90872 -14.64922 -14.42651 -14.22349 -14.02788 -13.86490 -13.50053 -13.42358 -13.37186 -13.15654 -13.06830 -12.79531 -12.73908 -12.70087 -12.52807 -12.30649 -12.22828 -11.79211 -11.68004 -11.39342 -11.00323 -10.92952 -10.75773 -10.67621 -10.10173 -9.66013 -8.96438 -7.95235 -5.26640 1.45220 1.47004 1.56729 1.64004 1.70411 2.02559 2.25324 2.45832 3.03988 3.28207 3.34068 3.53939 3.60805 3.79297 3.92654 4.09625 4.09707 4.32154 4.37867 4.41019 4.50930 4.61690 4.62521 4.69168 4.71539 4.75080 4.77561 4.83757 4.85786 4.91463 4.94072 5.03163 5.13398 5.20314 5.26101 5.33540 5.43145 5.46221 5.55468 5.87683 6.37859 6.53029 6.84889 6.88645 7.19528 7.29422 7.55746 8.55546 9.23700 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.001983 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.414008 B =14114.440872 C =14575.372094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.626 5.626 3 C 0.069 3.931 4 C 0.496 3.504 5 O -0.596 6.596 6 C -0.127 4.127 7 C -0.087 4.087 8 C -0.128 4.128 9 C 0.506 3.494 10 O -0.591 6.591 11 N -0.717 5.717 12 C 0.121 3.879 13 C 0.097 3.903 14 O -0.534 6.534 15 C 0.124 3.876 16 N -0.634 5.634 17 C -0.230 4.230 18 H 0.083 0.917 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.982 3.018 22 H -0.286 1.286 23 H -0.268 1.268 24 H -0.291 1.291 25 C 0.143 3.857 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.384 0.616 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.250 0.750 45 H 0.026 0.974 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.208 19.624 -8.218 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.360 5.360 3 C -0.073 4.073 4 C 0.286 3.714 5 O -0.477 6.477 6 C -0.167 4.167 7 C -0.126 4.126 8 C -0.168 4.168 9 C 0.295 3.705 10 O -0.471 6.471 11 N -0.372 5.372 12 C -0.004 4.004 13 C 0.054 3.946 14 O -0.341 6.341 15 C -0.002 4.002 16 N -0.359 5.359 17 C -0.358 4.358 18 H 0.101 0.899 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.810 3.190 22 H -0.213 1.213 23 H -0.193 1.193 24 H -0.217 1.217 25 C 0.017 3.983 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.250 0.750 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.233 0.767 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.384 17.948 -8.191 27.658 hybrid contribution 0.647 0.104 0.828 1.056 sum -18.737 18.052 -7.364 27.040 Atomic orbital electron populations 1.21703 0.79346 1.03257 1.02022 1.48013 1.07592 1.07308 1.73051 1.22150 0.98112 0.83509 1.03519 1.21504 0.92039 0.82889 0.74926 1.90716 1.71798 1.33276 1.51922 1.21729 0.89211 0.98364 1.07354 1.20963 0.93762 0.95761 1.02096 1.21728 0.95837 0.91328 1.07860 1.21518 0.81423 0.93193 0.74351 1.90722 1.56377 1.48591 1.51381 1.45864 1.07538 1.08445 1.75319 1.21555 0.91620 0.84599 1.02673 1.22815 0.89216 0.92744 0.89841 1.86596 1.63890 1.25970 1.57654 1.22617 0.90140 0.93256 0.94169 1.45741 1.08262 1.38571 1.43364 1.19310 0.86411 1.20297 1.09778 0.89915 1.25673 1.02861 1.00531 0.96898 1.70009 1.36285 1.35038 1.18807 0.85009 0.79248 0.76759 0.77981 1.21319 1.19308 1.21689 1.22676 0.88632 0.94067 0.92928 0.92664 0.88343 0.93087 0.90936 0.89462 0.88884 0.85541 0.85318 0.93478 0.93902 0.85512 0.84790 0.74966 0.90520 0.91373 0.76658 0.92708 0.91712 0.94124 0.95663 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.44 127.77 1.33 2.27 16 2 N -0.63 -7.76 3.27 -871.90 -2.85 -10.62 16 3 C 0.07 0.18 10.24 127.77 1.31 1.49 16 4 C 0.50 9.43 7.67 87.66 0.67 10.10 16 5 O -0.60 -18.30 15.56 -3.04 -0.05 -18.35 16 6 C -0.13 -1.36 4.25 29.85 0.13 -1.23 16 7 C -0.09 -1.65 3.79 30.60 0.12 -1.53 16 8 C -0.13 -1.70 5.70 29.85 0.17 -1.53 16 9 C 0.51 12.30 7.83 87.66 0.69 12.98 16 10 O -0.59 -20.79 15.98 -3.05 -0.05 -20.84 16 11 N -0.72 -16.12 5.34 -463.07 -2.47 -18.60 16 12 C 0.12 3.54 5.43 86.38 0.47 4.01 16 13 C 0.10 3.42 1.74 -10.37 -0.02 3.40 16 14 O -0.53 -17.87 13.56 -148.98 -2.02 -19.89 16 15 C 0.12 5.12 8.10 83.17 0.67 5.80 16 16 N -0.63 -33.24 3.76 -738.47 -2.78 -36.02 16 17 C -0.23 -13.24 10.73 84.03 0.90 -12.33 16 18 H 0.08 4.58 7.84 -2.91 -0.02 4.56 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.95 -57.56 11.80 21.65 0.26 -57.30 16 21 Si 0.98 46.06 29.56 68.60 2.03 48.09 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 C 0.14 6.61 6.66 83.26 0.55 7.16 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.53 8.07 -2.39 -0.02 0.51 16 28 H 0.05 0.87 7.42 -2.39 -0.02 0.85 16 29 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.09 0.01 8.07 -2.38 -0.02 -0.01 16 31 H 0.09 -0.05 6.44 -2.39 -0.02 -0.06 16 32 H 0.13 0.60 7.40 -2.39 -0.02 0.58 16 33 H 0.13 0.54 8.11 -2.38 -0.02 0.52 16 34 H 0.05 1.17 8.06 -2.39 -0.02 1.15 16 35 H 0.04 1.10 8.06 -2.39 -0.02 1.09 16 36 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.41 6.68 6.95 -92.71 -0.64 6.04 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 41 H 0.38 8.56 7.21 -74.06 -0.53 8.03 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.03 1.22 7.93 -2.39 -0.02 1.21 16 46 H 0.04 1.98 7.57 -2.38 -0.02 1.96 16 Total: -1.00 -90.54 380.52 -0.67 -91.21 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.19 Total: 15.10 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 7.46 Total: 27.22 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -7.85 Total: -122.54 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -2.12 Total: -59.08 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -90.54 -0.67 -91.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672133308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.182 kcal (2) G-P(sol) polarization free energy of solvation -90.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds