Wall clock time and date at job start Fri Apr 10 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 119.99857 * 2 1 4 4 N 1.34776 * 120.00455 * 180.02562 * 2 1 3 5 5 C 1.46495 * 120.00394 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47180 * 59.99434 * 5 4 2 7 7 C 1.53007 * 109.46768 * 299.99941 * 5 4 2 8 8 C 1.50701 * 109.47347 * 179.97438 * 5 4 2 9 9 O 1.21281 * 119.99825 * 144.99719 * 8 5 4 10 10 N 1.34767 * 119.99809 * 325.00309 * 8 5 4 11 11 C 1.46503 * 119.99818 * 180.02562 * 10 8 5 12 12 C 1.53006 * 109.47379 * 174.37646 * 11 10 8 13 13 H 1.09002 * 109.70727 * 56.48612 * 12 11 10 14 14 C 1.53288 * 109.68493 * 177.02480 * 12 11 10 15 15 O 1.42961 * 109.22280 * 172.02250 * 14 12 11 16 16 C 1.42961 * 114.16878 * 297.41914 * 15 14 12 17 17 C 1.52873 * 109.29498 * 62.44922 * 16 15 14 18 18 N 1.47149 * 108.61084 * 307.93346 * 17 16 15 19 19 C 1.36941 * 120.98568 * 230.50202 * 18 17 16 20 20 H 1.08001 * 119.99762 * 219.69160 * 19 18 17 21 21 C 1.38807 * 119.99530 * 39.68992 * 19 18 17 22 22 N 1.31611 * 120.00531 * 10.55512 * 21 19 18 23 23 Si 1.86800 * 119.99659 * 190.55482 * 21 19 18 24 24 H 1.48503 * 109.47091 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47127 * 300.00159 * 23 21 19 26 26 H 1.48503 * 109.47424 * 60.00078 * 23 21 19 27 27 H 1.08998 * 109.47290 * 269.99342 * 1 2 3 28 28 H 1.08990 * 109.47422 * 30.00349 * 1 2 3 29 29 H 1.09008 * 109.46763 * 150.00097 * 1 2 3 30 30 H 0.97008 * 119.99368 * 0.02562 * 4 2 1 31 31 H 1.09002 * 109.47126 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47534 * 300.00758 * 6 5 4 33 33 H 1.09005 * 109.47346 * 60.00461 * 6 5 4 34 34 H 1.09004 * 109.46777 * 299.99308 * 7 5 4 35 35 H 1.08998 * 109.47258 * 59.99581 * 7 5 4 36 36 H 1.09002 * 109.47027 * 179.97438 * 7 5 4 37 37 H 0.97000 * 120.00220 * 359.97438 * 10 8 5 38 38 H 1.08992 * 109.47623 * 54.37525 * 11 10 8 39 39 H 1.08998 * 109.46862 * 294.37473 * 11 10 8 40 40 H 1.09005 * 109.51058 * 291.95182 * 14 12 11 41 41 H 1.09003 * 109.51292 * 52.04749 * 14 12 11 42 42 H 1.08999 * 109.50910 * 182.50402 * 16 15 14 43 43 H 1.08995 * 109.51047 * 302.66017 * 16 15 14 44 44 H 1.09003 * 109.61780 * 188.11591 * 17 16 15 45 45 H 1.09003 * 109.52999 * 67.70150 * 17 16 15 46 46 H 0.97005 * 120.00253 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1554 -0.4466 1.2498 7 6 4.1564 -0.4450 -1.2486 8 6 4.1483 -2.5879 -0.0001 9 8 5.1619 -2.8726 -0.6022 10 7 3.4713 -3.5421 0.6688 11 6 3.9600 -4.9232 0.6692 12 6 3.0973 -5.7693 1.6077 13 1 2.0520 -5.7026 1.3062 14 6 3.5576 -7.2305 1.5553 15 8 2.8749 -7.9756 2.5665 16 6 3.1529 -7.5431 3.9004 17 6 2.6768 -6.1008 4.0734 18 7 3.2464 -5.2850 2.9893 19 6 3.9010 -4.1127 3.2585 20 1 3.7621 -3.2566 2.6149 21 6 4.7429 -4.0248 4.3586 22 7 5.0765 -5.1123 5.0206 23 14 5.4024 -2.3629 4.8995 24 1 6.2729 -2.5393 6.0897 25 1 6.1911 -1.7600 3.7951 26 1 4.2681 -1.4682 5.2434 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5139 30 1 1.6959 -2.0072 -0.0013 31 1 5.2455 -0.4462 1.2500 32 1 3.7920 0.5810 1.2504 33 1 3.7919 -0.9610 2.1395 34 1 3.7934 -0.9584 -2.1390 35 1 3.7929 0.5826 -1.2481 36 1 5.2464 -0.4446 -1.2480 37 1 2.6609 -3.3143 1.1507 38 1 4.9948 -4.9424 1.0109 39 1 3.9034 -5.3288 -0.3409 40 1 3.3272 -7.6498 0.5759 41 1 4.6326 -7.2800 1.7288 42 1 2.6313 -8.1874 4.6081 43 1 4.2262 -7.5938 4.0833 44 1 3.0130 -5.7174 5.0368 45 1 1.5883 -6.0680 4.0243 46 1 5.6652 -5.0509 5.7892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673064968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:21 Heat of formation + Delta-G solvation = -107.377448 kcal Electronic energy + Delta-G solvation = -28598.008266 eV Core-core repulsion = 24716.039099 eV Total energy + Delta-G solvation = -3881.969167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83147 -40.39534 -39.78493 -36.99257 -36.57879 -35.37445 -33.23709 -33.15193 -32.11633 -29.80458 -29.07744 -28.36213 -27.34061 -25.18271 -24.53031 -23.15226 -21.87102 -21.25507 -20.57349 -19.51832 -18.40530 -17.71056 -17.29603 -17.14974 -16.55367 -16.34349 -16.19690 -16.18036 -16.03578 -15.54430 -15.34258 -15.11498 -14.80935 -14.70292 -14.37590 -14.07897 -13.55845 -13.43227 -13.34496 -13.17600 -13.11369 -13.05311 -12.97814 -12.78399 -12.73635 -12.41686 -12.39482 -12.19792 -11.92630 -11.86825 -11.30165 -11.12540 -10.88228 -10.54908 -10.33669 -10.27621 -9.89983 -8.43185 -7.87342 -5.46685 1.38718 1.40056 1.43751 1.44289 1.66453 2.08818 2.18838 2.43947 3.07683 3.29473 3.44942 3.52144 3.83925 3.89460 3.97026 4.08792 4.27948 4.37939 4.49644 4.57239 4.58783 4.64892 4.66473 4.68804 4.71429 4.73817 4.77253 4.77738 4.82220 5.04191 5.07002 5.14764 5.15339 5.17766 5.31596 5.41281 5.46871 5.49896 5.73657 6.37727 6.44136 6.46821 6.53316 7.12116 7.14446 7.24443 7.76551 8.37695 9.14971 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.005293 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.829801 B = 5288.336103 C = 6043.455921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.579 6.579 4 N -0.716 5.716 5 C 0.168 3.832 6 C -0.158 4.158 7 C -0.139 4.139 8 C 0.514 3.486 9 O -0.571 6.571 10 N -0.689 5.689 11 C 0.143 3.857 12 C 0.125 3.875 13 H 0.067 0.933 14 C 0.054 3.946 15 O -0.398 6.398 16 C 0.060 3.940 17 C 0.131 3.869 18 N -0.599 5.599 19 C -0.252 4.252 20 H 0.087 0.913 21 C -0.031 4.031 22 N -0.919 5.919 23 Si 0.932 3.068 24 H -0.301 1.301 25 H -0.285 1.285 26 H -0.272 1.272 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.413 0.587 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.026 0.974 42 H 0.096 0.904 43 H 0.029 0.971 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 3.360 -9.575 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.301 3.699 3 O -0.459 6.459 4 N -0.372 5.372 5 C 0.079 3.921 6 C -0.216 4.216 7 C -0.197 4.197 8 C 0.299 3.701 9 O -0.450 6.450 10 N -0.341 5.341 11 C 0.019 3.981 12 C 0.019 3.981 13 H 0.084 0.916 14 C -0.024 4.024 15 O -0.317 6.317 16 C -0.018 4.018 17 C 0.006 3.994 18 N -0.325 5.325 19 C -0.382 4.382 20 H 0.104 0.896 21 C -0.228 4.228 22 N -0.563 5.563 23 Si 0.762 3.238 24 H -0.227 1.227 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.251 0.749 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.044 0.956 42 H 0.114 0.886 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.116 3.700 -9.893 14.625 hybrid contribution 0.882 0.527 1.324 1.675 sum -9.235 4.227 -8.569 13.288 Atomic orbital electron populations 1.21929 0.87707 1.06485 1.06264 1.21598 0.92223 0.82383 0.73654 1.90651 1.71602 1.32704 1.50929 1.46194 1.04870 1.10194 1.75968 1.20355 0.81920 0.91532 0.98330 1.22149 1.01398 1.02485 0.95611 1.21930 1.01666 1.01286 0.94822 1.20632 0.84020 0.86990 0.78461 1.90676 1.26074 1.82429 1.45819 1.45993 1.28760 1.08692 1.50639 1.21146 0.97733 0.80596 0.98605 1.21717 0.97735 0.92675 0.85926 0.91577 1.22976 0.95055 0.92331 0.92086 1.87764 1.70184 1.57952 1.15797 1.22779 0.99331 0.96730 0.82960 1.21286 0.93648 0.90282 0.94230 1.44295 1.64474 1.23371 1.00317 1.19619 1.18415 0.89843 1.10372 0.89634 1.25868 0.97511 0.98045 1.01422 1.70015 1.37542 1.27399 1.21383 0.85907 0.78477 0.82227 0.77199 1.22742 1.21113 1.19774 0.87391 0.88308 0.87422 0.74903 0.92314 0.89246 0.92533 0.91687 0.90057 0.91770 0.75104 0.94122 0.89656 0.86474 0.95563 0.88567 0.95207 0.91299 0.95887 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.30 71.24 0.73 -1.19 16 2 C 0.51 11.04 7.36 87.66 0.65 11.68 16 3 O -0.58 -17.14 13.31 -3.03 -0.04 -17.18 16 4 N -0.72 -15.32 4.86 -426.33 -2.07 -17.39 16 5 C 0.17 4.83 0.98 2.86 0.00 4.83 16 6 C -0.16 -5.09 8.38 71.98 0.60 -4.48 16 7 C -0.14 -3.88 7.93 71.98 0.57 -3.31 16 8 C 0.51 17.09 6.64 87.66 0.58 17.67 16 9 O -0.57 -23.06 16.09 -3.03 -0.05 -23.11 16 10 N -0.69 -21.28 3.07 -463.07 -1.42 -22.70 16 11 C 0.14 4.81 4.57 86.38 0.39 5.20 16 12 C 0.13 4.31 3.16 44.96 0.14 4.45 16 13 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 14 C 0.05 1.85 6.29 72.08 0.45 2.30 16 15 O -0.40 -14.92 10.74 -148.98 -1.60 -16.52 16 16 C 0.06 2.37 6.97 71.94 0.50 2.87 16 17 C 0.13 5.58 5.90 86.21 0.51 6.09 16 18 N -0.60 -25.54 2.98 -674.52 -2.01 -27.55 16 19 C -0.25 -11.89 7.92 84.03 0.67 -11.22 16 20 H 0.09 3.80 4.69 -2.91 -0.01 3.78 16 21 C -0.03 -1.60 5.07 84.86 0.43 -1.17 16 22 N -0.92 -50.15 11.37 21.65 0.25 -49.91 16 23 Si 0.93 43.14 29.57 68.60 2.03 45.17 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.41 6.71 7.24 -92.70 -0.67 6.04 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.85 6.17 -2.39 -0.01 2.83 16 33 H 0.06 1.91 7.93 -2.38 -0.02 1.89 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 2.31 6.17 -2.39 -0.01 2.30 16 36 H 0.06 1.91 7.87 -2.39 -0.02 1.90 16 37 H 0.41 11.41 6.21 -92.71 -0.58 10.83 16 38 H 0.04 1.72 7.86 -2.39 -0.02 1.71 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 3.37 5.99 -2.39 -0.01 3.36 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.25 13.47 8.31 -92.70 -0.77 12.70 16 Total: -1.00 -66.48 360.93 1.08 -65.40 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.24 Total: 30.06 kcal Atomic # 6 Polarization: 27.50 SS G_CDS: 6.23 Total: 33.74 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -5.25 Total: -117.55 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -1.69 Total: -56.81 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -66.48 1.08 -65.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673064968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.978 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds