Wall clock time and date at job start Fri Apr 10 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99816 * 2 1 4 4 N 1.34768 * 120.00371 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99689 * 355.33239 * 4 2 1 6 6 C 1.46502 * 120.00349 * 175.33258 * 4 2 1 7 7 C 1.50696 * 109.46917 * 89.99782 * 6 4 2 8 8 O 1.21278 * 120.00238 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99589 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00120 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47496 * 185.01531 * 10 9 7 12 12 N 1.46499 * 109.54428 * 300.01492 * 11 10 9 13 13 C 1.36932 * 119.99993 * 304.88697 * 12 11 10 14 14 H 1.08004 * 120.00329 * 4.98837 * 13 12 11 15 15 C 1.38812 * 120.00159 * 184.98685 * 13 12 11 16 16 N 1.31624 * 120.00005 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00399 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46981 * 59.99852 * 17 15 13 19 19 H 1.48493 * 109.47371 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47156 * 300.00703 * 17 15 13 21 21 C 1.53171 * 109.54511 * 179.83419 * 11 10 9 22 22 C 1.53110 * 109.15940 * 183.24038 * 21 11 10 23 23 O 1.42904 * 109.48275 * 57.47546 * 22 21 11 24 24 C 1.42900 * 114.10261 * 298.89056 * 23 22 21 25 25 C 1.53095 * 109.41221 * 61.15643 * 24 23 22 26 26 H 1.08995 * 109.47082 * 185.22608 * 1 2 3 27 27 H 1.09004 * 109.47171 * 305.22432 * 1 2 3 28 28 H 1.08995 * 109.47586 * 65.22378 * 1 2 3 29 29 H 1.09001 * 109.46893 * 275.49267 * 5 4 2 30 30 H 1.08992 * 109.47563 * 35.49536 * 5 4 2 31 31 H 1.09001 * 109.47382 * 155.49980 * 5 4 2 32 32 H 1.08999 * 109.46497 * 329.99484 * 6 4 2 33 33 H 1.08998 * 109.46846 * 210.00178 * 6 4 2 34 34 H 0.97006 * 120.00431 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47088 * 65.01464 * 10 9 7 36 36 H 1.09000 * 109.47057 * 305.01989 * 10 9 7 37 37 H 0.96995 * 119.99828 * 124.88237 * 12 11 10 38 38 H 0.96997 * 120.00359 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.52590 * 303.06247 * 21 11 10 40 40 H 1.08997 * 109.52295 * 63.25063 * 21 11 10 41 41 H 1.09000 * 109.40558 * 297.50107 * 22 21 11 42 42 H 1.08997 * 109.49089 * 177.50732 * 22 21 11 43 43 H 1.09005 * 109.48040 * 301.17766 * 24 23 22 44 44 H 1.08999 * 109.49540 * 181.14609 * 24 23 22 45 45 H 1.09004 * 109.51821 * 182.48716 * 25 24 23 46 46 H 1.08998 * 109.57330 * 62.33396 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4520 -2.4338 0.1022 6 6 3.6423 -1.1691 -0.1038 7 6 4.2434 -1.1126 1.2769 8 8 3.5222 -1.0739 2.2512 9 7 5.5826 -1.1040 1.4290 10 6 6.1671 -1.0496 2.7712 11 6 7.6880 -0.9249 2.6606 12 7 8.2237 -2.0837 1.9419 13 6 7.9470 -3.3504 2.3823 14 1 7.2692 -3.4983 3.2101 15 6 8.5377 -4.4444 1.7649 16 7 9.3641 -4.2641 0.7564 17 14 8.1608 -6.1723 2.3661 18 1 6.7042 -6.4332 2.2414 19 1 8.9124 -7.1565 1.5466 20 1 8.5665 -6.3010 3.7889 21 6 8.3005 -0.8638 4.0632 22 6 9.8129 -0.6578 3.9425 23 8 10.0737 0.5351 3.2002 24 6 9.5655 0.5143 1.8647 25 6 8.0431 0.3576 1.9020 26 1 -0.3633 -1.0233 0.0936 27 1 -0.3634 0.5928 0.8395 28 1 -0.3634 0.4306 -0.9330 29 1 1.2583 -2.6575 1.1512 30 1 0.5059 -2.3530 -0.4328 31 1 2.0497 -3.2335 -0.3354 32 1 3.9671 -0.3011 -0.6774 33 1 3.9697 -2.0796 -0.6057 34 1 6.1594 -1.1346 0.6497 35 1 5.9158 -1.9608 3.3142 36 1 5.7697 -0.1869 3.3059 37 1 8.7744 -1.9536 1.1541 38 1 9.7771 -5.0285 0.3252 39 1 7.8637 -0.0317 4.6155 40 1 8.0995 -1.7969 4.5894 41 1 10.2545 -1.5106 3.4269 42 1 10.2484 -0.5692 4.9377 43 1 10.0039 -0.3232 1.3220 44 1 9.8227 1.4472 1.3631 45 1 7.6581 0.2972 0.8840 46 1 7.6000 1.2150 2.4086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699880447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:37 Heat of formation + Delta-G solvation = -98.122082 kcal Electronic energy + Delta-G solvation = -27701.656790 eV Core-core repulsion = 23820.088966 eV Total energy + Delta-G solvation = -3881.567824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19935 -39.43667 -38.42589 -35.90536 -35.33789 -33.45693 -32.21895 -30.82944 -30.62950 -29.20368 -28.35091 -26.86172 -25.56900 -24.08425 -23.04212 -22.09677 -20.34642 -19.29894 -18.59914 -17.42433 -17.14019 -17.01172 -16.37227 -15.67299 -15.47962 -15.28364 -15.20658 -14.72057 -14.44301 -14.28938 -13.86466 -13.66172 -13.46361 -13.29786 -13.11330 -12.85821 -12.72480 -12.51926 -12.20165 -12.10819 -11.99702 -11.78551 -11.52987 -11.41660 -10.94051 -10.89828 -10.79316 -10.40175 -10.08540 -9.92313 -9.84906 -9.75783 -9.67884 -9.19603 -8.84415 -8.64170 -8.46582 -7.13071 -5.89895 -3.20235 2.53274 2.85997 3.02856 3.35002 3.40765 3.41782 3.76922 4.38377 4.48017 4.51680 4.91352 4.95496 5.09752 5.19843 5.21551 5.24126 5.25677 5.36096 5.37348 5.39450 5.52010 5.56649 5.61362 5.64629 5.70882 5.77883 6.00507 6.09777 6.12517 6.18373 6.27081 6.32235 6.41843 6.53718 6.57965 6.72679 6.80074 7.00519 7.25876 7.60999 7.71987 7.97837 8.11672 8.27289 8.65745 9.39943 9.90863 10.27920 11.31727 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.004436 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.319099 B = 6309.935462 C = 7953.558977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.516 3.484 3 O -0.545 6.545 4 N -0.599 5.599 5 C 0.078 3.922 6 C 0.095 3.905 7 C 0.495 3.505 8 O -0.549 6.549 9 N -0.701 5.701 10 C 0.122 3.878 11 C 0.189 3.811 12 N -0.713 5.713 13 C -0.236 4.236 14 H 0.069 0.931 15 C -0.006 4.006 16 N -0.930 5.930 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.155 4.155 22 C 0.070 3.930 23 O -0.393 6.393 24 C 0.066 3.934 25 C -0.151 4.151 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 5.790 -3.126 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.305 3.695 3 O -0.422 6.422 4 N -0.332 5.332 5 C -0.065 4.065 6 C -0.032 4.032 7 C 0.279 3.721 8 O -0.427 6.427 9 N -0.352 5.352 10 C -0.004 4.004 11 C 0.097 3.903 12 N -0.356 5.356 13 C -0.367 4.367 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.578 5.578 17 Si 0.733 3.267 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.195 4.195 22 C -0.007 4.007 23 O -0.312 6.312 24 C -0.011 4.011 25 C -0.189 4.189 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.340 6.351 -2.284 13.196 hybrid contribution 0.116 -1.546 -0.298 1.579 sum -11.224 4.805 -2.581 12.479 Atomic orbital electron populations 1.21954 0.91713 1.04650 1.05033 1.20772 0.90656 0.82961 0.75083 1.90712 1.70671 1.31149 1.49712 1.47444 1.05651 1.07018 1.73119 1.21910 0.97034 0.85010 1.02538 1.21345 0.80823 1.05409 0.95597 1.20953 0.82793 0.76707 0.91653 1.90643 1.60663 1.50340 1.41015 1.45733 1.05844 1.73372 1.10219 1.21745 0.94459 1.00919 0.83272 1.19822 0.90564 0.87924 0.91951 1.42493 1.60875 1.00159 1.32027 1.19030 1.21433 0.83021 1.13255 0.91273 1.24683 0.99283 0.97661 0.98585 1.69634 1.33588 1.29838 1.24717 0.86353 0.77500 0.84770 0.78033 1.21413 1.21762 1.21260 1.22500 0.96824 1.01643 0.98545 1.22447 0.95143 0.87647 0.95425 1.87800 1.78648 1.39454 1.25293 1.22468 0.92838 1.01565 0.84265 1.22346 0.97414 0.98058 1.01093 0.90006 0.88793 0.88890 0.91944 0.90698 0.90626 0.87300 0.87347 0.76229 0.91575 0.92807 0.78017 0.93419 0.92699 0.90543 0.91421 0.90362 0.92278 0.89993 0.91214 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.00 36.00 0.36 -1.14 16 2 C 0.52 7.06 7.77 -10.99 -0.09 6.98 16 3 O -0.55 -9.77 16.73 5.55 0.09 -9.68 16 4 N -0.60 -7.57 2.36 -182.96 -0.43 -8.01 16 5 C 0.08 0.71 10.00 59.85 0.60 1.31 16 6 C 0.10 1.27 5.89 -5.19 -0.03 1.24 16 7 C 0.49 8.57 7.90 -10.99 -0.09 8.48 16 8 O -0.55 -11.40 16.43 5.56 0.09 -11.31 16 9 N -0.70 -11.89 5.11 -60.29 -0.31 -12.20 16 10 C 0.12 2.23 4.36 -4.04 -0.02 2.21 16 11 C 0.19 3.38 0.41 -131.64 -0.05 3.32 16 12 N -0.71 -15.12 3.93 -47.06 -0.19 -15.30 16 13 C -0.24 -5.77 8.69 -15.06 -0.13 -5.90 16 14 H 0.07 1.71 6.70 -52.48 -0.35 1.36 16 15 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 16 N -0.93 -25.51 13.06 55.49 0.72 -24.78 16 17 Si 0.90 21.17 29.55 -169.99 -5.02 16.14 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.15 -2.70 4.88 -26.59 -0.13 -2.83 16 22 C 0.07 1.23 6.68 37.21 0.25 1.47 16 23 O -0.39 -6.92 10.77 -35.23 -0.38 -7.30 16 24 C 0.07 1.05 6.67 37.21 0.25 1.29 16 25 C -0.15 -2.36 4.76 -26.59 -0.13 -2.49 16 26 H 0.08 0.51 5.49 -51.93 -0.29 0.23 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.45 6.14 -51.93 -0.32 0.13 16 31 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 32 H 0.11 1.42 7.49 -51.93 -0.39 1.03 16 33 H 0.11 1.19 7.86 -51.93 -0.41 0.78 16 34 H 0.40 6.41 7.30 -40.82 -0.30 6.11 16 35 H 0.07 1.36 6.94 -51.93 -0.36 1.00 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.38 8.76 6.59 -40.82 -0.27 8.49 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.42 7.60 -51.93 -0.39 1.03 16 41 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.03 7.00 -51.93 -0.36 0.67 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.02 7.09 -51.93 -0.37 0.65 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -32.86 368.00 -6.31 -39.17 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.13 Total: 14.03 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 0.70 Total: 13.70 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.20 Total: -60.29 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.20 Total: -28.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.86 -6.31 -39.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699880447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.954 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds