Wall clock time and date at job start Fri Apr 10 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99816 * 2 1 4 4 N 1.34768 * 120.00371 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99689 * 355.33239 * 4 2 1 6 6 C 1.46502 * 120.00349 * 175.33258 * 4 2 1 7 7 C 1.50696 * 109.46917 * 89.99782 * 6 4 2 8 8 O 1.21278 * 120.00238 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99589 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00120 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47496 * 185.01531 * 10 9 7 12 12 N 1.46499 * 109.54428 * 300.01492 * 11 10 9 13 13 C 1.36932 * 119.99993 * 304.88697 * 12 11 10 14 14 H 1.08004 * 120.00329 * 4.98837 * 13 12 11 15 15 C 1.38812 * 120.00159 * 184.98685 * 13 12 11 16 16 N 1.31624 * 120.00005 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00399 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46981 * 59.99852 * 17 15 13 19 19 H 1.48493 * 109.47371 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47156 * 300.00703 * 17 15 13 21 21 C 1.53171 * 109.54511 * 179.83419 * 11 10 9 22 22 C 1.53110 * 109.15940 * 183.24038 * 21 11 10 23 23 O 1.42904 * 109.48275 * 57.47546 * 22 21 11 24 24 C 1.42900 * 114.10261 * 298.89056 * 23 22 21 25 25 C 1.53095 * 109.41221 * 61.15643 * 24 23 22 26 26 H 1.08995 * 109.47082 * 185.22608 * 1 2 3 27 27 H 1.09004 * 109.47171 * 305.22432 * 1 2 3 28 28 H 1.08995 * 109.47586 * 65.22378 * 1 2 3 29 29 H 1.09001 * 109.46893 * 275.49267 * 5 4 2 30 30 H 1.08992 * 109.47563 * 35.49536 * 5 4 2 31 31 H 1.09001 * 109.47382 * 155.49980 * 5 4 2 32 32 H 1.08999 * 109.46497 * 329.99484 * 6 4 2 33 33 H 1.08998 * 109.46846 * 210.00178 * 6 4 2 34 34 H 0.97006 * 120.00431 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47088 * 65.01464 * 10 9 7 36 36 H 1.09000 * 109.47057 * 305.01989 * 10 9 7 37 37 H 0.96995 * 119.99828 * 124.88237 * 12 11 10 38 38 H 0.96997 * 120.00359 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.52590 * 303.06247 * 21 11 10 40 40 H 1.08997 * 109.52295 * 63.25063 * 21 11 10 41 41 H 1.09000 * 109.40558 * 297.50107 * 22 21 11 42 42 H 1.08997 * 109.49089 * 177.50732 * 22 21 11 43 43 H 1.09005 * 109.48040 * 301.17766 * 24 23 22 44 44 H 1.08999 * 109.49540 * 181.14609 * 24 23 22 45 45 H 1.09004 * 109.51821 * 182.48716 * 25 24 23 46 46 H 1.08998 * 109.57330 * 62.33396 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4520 -2.4338 0.1022 6 6 3.6423 -1.1691 -0.1038 7 6 4.2434 -1.1126 1.2769 8 8 3.5222 -1.0739 2.2512 9 7 5.5826 -1.1040 1.4290 10 6 6.1671 -1.0496 2.7712 11 6 7.6880 -0.9249 2.6606 12 7 8.2237 -2.0837 1.9419 13 6 7.9470 -3.3504 2.3823 14 1 7.2692 -3.4983 3.2101 15 6 8.5377 -4.4444 1.7649 16 7 9.3641 -4.2641 0.7564 17 14 8.1608 -6.1723 2.3661 18 1 6.7042 -6.4332 2.2414 19 1 8.9124 -7.1565 1.5466 20 1 8.5665 -6.3010 3.7889 21 6 8.3005 -0.8638 4.0632 22 6 9.8129 -0.6578 3.9425 23 8 10.0737 0.5351 3.2002 24 6 9.5655 0.5143 1.8647 25 6 8.0431 0.3576 1.9020 26 1 -0.3633 -1.0233 0.0936 27 1 -0.3634 0.5928 0.8395 28 1 -0.3634 0.4306 -0.9330 29 1 1.2583 -2.6575 1.1512 30 1 0.5059 -2.3530 -0.4328 31 1 2.0497 -3.2335 -0.3354 32 1 3.9671 -0.3011 -0.6774 33 1 3.9697 -2.0796 -0.6057 34 1 6.1594 -1.1346 0.6497 35 1 5.9158 -1.9608 3.3142 36 1 5.7697 -0.1869 3.3059 37 1 8.7744 -1.9536 1.1541 38 1 9.7771 -5.0285 0.3252 39 1 7.8637 -0.0317 4.6155 40 1 8.0995 -1.7969 4.5894 41 1 10.2545 -1.5106 3.4269 42 1 10.2484 -0.5692 4.9377 43 1 10.0039 -0.3232 1.3220 44 1 9.8227 1.4472 1.3631 45 1 7.6581 0.2972 0.8840 46 1 7.6000 1.2150 2.4086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699880447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:37 Heat of formation + Delta-G solvation = -122.556601 kcal Electronic energy + Delta-G solvation = -27702.716350 eV Core-core repulsion = 23820.088966 eV Total energy + Delta-G solvation = -3882.627385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41464 -40.77248 -39.76921 -37.36011 -36.45647 -35.11792 -33.88901 -32.00477 -31.75899 -30.96601 -29.37349 -27.96874 -26.67709 -25.91442 -24.46153 -23.50702 -21.68106 -20.42268 -20.06495 -19.15652 -18.39934 -18.13120 -17.48869 -17.16234 -16.83420 -16.66182 -16.41899 -16.15093 -15.92973 -15.79077 -15.38676 -15.23686 -14.59719 -14.40349 -14.23235 -13.98226 -13.78154 -13.70066 -13.69050 -13.18876 -13.15324 -12.99713 -12.91443 -12.81388 -12.68649 -12.49326 -12.24566 -12.14288 -11.76568 -11.48340 -11.20052 -11.15414 -10.98140 -10.93570 -10.35751 -9.95251 -9.74410 -8.98643 -7.90195 -5.17234 1.46743 1.49132 1.50050 1.53368 1.65625 1.92558 2.47834 2.57753 3.04921 3.41942 3.68415 3.73171 3.83829 3.85367 3.98225 4.13018 4.16380 4.21088 4.27052 4.35047 4.42184 4.43789 4.57079 4.62902 4.68302 4.73227 4.74692 4.79931 4.87080 4.90931 4.99422 5.05576 5.09171 5.19653 5.25735 5.30893 5.32322 5.55391 5.61232 6.30467 6.32920 6.34189 6.61647 7.09688 7.28276 7.40437 8.07880 8.36471 9.31525 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.004436 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.319099 B = 6309.935462 C = 7953.558977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.503 3.497 3 O -0.598 6.598 4 N -0.602 5.602 5 C 0.072 3.928 6 C 0.097 3.903 7 C 0.489 3.511 8 O -0.587 6.587 9 N -0.698 5.698 10 C 0.131 3.869 11 C 0.189 3.811 12 N -0.712 5.712 13 C -0.217 4.217 14 H 0.064 0.936 15 C -0.057 4.057 16 N -0.958 5.958 17 Si 0.951 3.049 18 H -0.286 1.286 19 H -0.299 1.299 20 H -0.286 1.286 21 C -0.152 4.152 22 C 0.076 3.924 23 O -0.397 6.397 24 C 0.065 3.935 25 C -0.143 4.143 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.408 0.592 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.378 0.622 38 H 0.248 0.752 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.100 0.900 43 H 0.040 0.960 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 6.235 -3.624 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.294 3.706 3 O -0.480 6.480 4 N -0.334 5.334 5 C -0.070 4.070 6 C -0.030 4.030 7 C 0.275 3.725 8 O -0.468 6.468 9 N -0.348 5.348 10 C 0.004 3.996 11 C 0.098 3.902 12 N -0.353 5.353 13 C -0.349 4.349 14 H 0.082 0.918 15 C -0.250 4.250 16 N -0.609 5.609 17 Si 0.782 3.218 18 H -0.213 1.213 19 H -0.225 1.225 20 H -0.213 1.213 21 C -0.193 4.193 22 C -0.001 4.001 23 O -0.317 6.317 24 C -0.012 4.012 25 C -0.182 4.182 26 H 0.127 0.873 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.245 0.755 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.212 0.788 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.130 0.870 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.737 6.784 -2.773 14.696 hybrid contribution 0.508 -1.631 -0.087 1.711 sum -12.230 5.153 -2.861 13.576 Atomic orbital electron populations 1.21998 0.87809 1.06651 1.06066 1.21744 0.92672 0.82362 0.73799 1.90677 1.72077 1.32979 1.52220 1.47693 1.05384 1.08161 1.72113 1.22157 0.98665 0.83730 1.02428 1.21403 0.81681 1.06888 0.93027 1.21721 0.82468 0.75397 0.92887 1.90618 1.61411 1.52078 1.42688 1.45736 1.06152 1.73092 1.09856 1.21548 0.94572 0.99571 0.83877 1.19969 0.90019 0.87889 0.92335 1.42490 1.60632 1.00208 1.31970 1.19159 1.19620 0.84246 1.11878 0.91791 1.25185 1.00242 1.00159 0.99441 1.69746 1.35197 1.29837 1.26103 0.85564 0.77041 0.81903 0.77274 1.21287 1.22511 1.21323 1.22464 0.97029 1.01644 0.98122 1.22370 0.94866 0.86744 0.96132 1.87802 1.78874 1.39038 1.25943 1.22584 0.92655 1.02389 0.83564 1.22300 0.97445 0.96861 1.01545 0.87290 0.88824 0.86878 0.93271 0.86993 0.89455 0.86930 0.84610 0.75511 0.94306 0.92652 0.78777 0.94251 0.90839 0.92030 0.94512 0.88244 0.94129 0.87018 0.90036 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.00 71.24 0.71 -1.74 16 2 C 0.50 13.14 7.77 87.66 0.68 13.82 16 3 O -0.60 -21.40 16.73 -3.04 -0.05 -21.45 16 4 N -0.60 -14.24 2.36 -851.14 -2.01 -16.25 16 5 C 0.07 1.12 10.00 127.77 1.28 2.40 16 6 C 0.10 2.48 5.89 85.63 0.50 2.98 16 7 C 0.49 16.73 7.90 87.66 0.69 17.42 16 8 O -0.59 -24.49 16.43 -3.02 -0.05 -24.54 16 9 N -0.70 -23.31 5.11 -463.06 -2.37 -25.67 16 10 C 0.13 4.75 4.36 86.38 0.38 5.12 16 11 C 0.19 6.61 0.41 3.72 0.00 6.61 16 12 N -0.71 -30.16 3.93 -302.82 -1.19 -31.35 16 13 C -0.22 -10.64 8.69 84.03 0.73 -9.90 16 14 H 0.06 3.19 6.70 -2.91 -0.02 3.17 16 15 C -0.06 -2.98 5.50 84.86 0.47 -2.52 16 16 N -0.96 -53.14 13.06 21.65 0.28 -52.86 16 17 Si 0.95 43.81 29.55 68.60 2.03 45.84 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 21 C -0.15 -5.20 4.88 30.69 0.15 -5.05 16 22 C 0.08 2.58 6.68 72.02 0.48 3.06 16 23 O -0.40 -13.33 10.77 -148.98 -1.60 -14.93 16 24 C 0.06 1.95 6.67 72.01 0.48 2.43 16 25 C -0.14 -4.24 4.76 30.69 0.15 -4.09 16 26 H 0.11 0.96 5.49 -2.39 -0.01 0.95 16 27 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 0.90 6.14 -2.39 -0.01 0.88 16 31 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 32 H 0.11 2.82 7.49 -2.39 -0.02 2.81 16 33 H 0.14 2.68 7.86 -2.39 -0.02 2.67 16 34 H 0.41 12.66 7.30 -92.70 -0.68 11.98 16 35 H 0.04 1.62 6.94 -2.38 -0.02 1.60 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.38 17.27 6.59 -92.71 -0.61 16.66 16 38 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.28 7.60 -2.39 -0.02 2.26 16 41 H 0.04 1.49 7.75 -2.39 -0.02 1.47 16 42 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.04 1.39 7.00 -2.38 -0.02 1.37 16 44 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.08 2.23 7.09 -2.38 -0.02 2.21 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -72.31 368.00 1.46 -70.85 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.28 Total: 39.83 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: 6.70 Total: 30.54 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.28 Total: -126.13 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -1.70 Total: -60.93 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.31 1.46 -70.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699880447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.710 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds