Wall clock time and date at job start Fri Apr 10 2020 18:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99531 * 2 1 4 4 O 1.21270 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99657 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47480 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47464 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47182 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47199 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99898 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99991 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00059 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47266 * 179.97438 * 12 11 9 14 14 O 1.42899 * 113.41683 * 313.20046 * 13 12 11 15 15 C 1.53492 * 114.20723 * 179.97438 * 13 12 11 16 16 N 1.47069 * 87.98838 * 220.34480 * 15 13 12 17 17 C 1.36936 * 136.06301 * 207.07784 * 16 15 13 18 18 H 1.08006 * 119.99418 * 7.84113 * 17 16 15 19 19 C 1.38804 * 120.00237 * 187.83484 * 17 16 15 20 20 N 1.31625 * 119.99842 * 195.05312 * 19 17 16 21 21 Si 1.86804 * 120.00142 * 15.32461 * 19 17 16 22 22 H 1.48501 * 109.47266 * 269.72654 * 21 19 17 23 23 H 1.48499 * 109.46684 * 29.72784 * 21 19 17 24 24 H 1.48499 * 109.47124 * 149.72495 * 21 19 17 25 25 C 1.47077 * 87.88174 * 27.34535 * 16 15 13 26 26 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46978 * 299.99298 * 1 2 3 28 28 H 1.08998 * 109.47289 * 60.00039 * 1 2 3 29 29 H 0.96998 * 119.99923 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46908 * 59.99640 * 5 3 2 31 31 H 1.09007 * 109.47250 * 299.99939 * 5 3 2 32 32 H 1.09007 * 109.46695 * 59.99675 * 6 5 3 33 33 H 1.09007 * 109.46824 * 300.00194 * 6 5 3 34 34 H 1.08998 * 109.47188 * 60.00044 * 7 6 5 35 35 H 1.08998 * 109.47160 * 299.99904 * 7 6 5 36 36 H 1.09001 * 109.47292 * 60.00203 * 8 7 6 37 37 H 1.08998 * 109.47192 * 300.00126 * 8 7 6 38 38 H 0.96998 * 120.00211 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47277 * 59.99632 * 12 11 9 40 40 H 1.08998 * 109.46987 * 299.99544 * 12 11 9 41 41 H 0.96703 * 113.99756 * 46.79521 * 14 13 12 42 42 H 1.08997 * 113.46930 * 105.57004 * 15 13 12 43 43 H 1.09004 * 113.52079 * 335.13441 * 15 13 12 44 44 H 0.96999 * 120.00088 * 355.18627 * 20 19 17 45 45 H 1.08999 * 113.46528 * 87.43645 * 25 16 15 46 46 H 1.08996 * 113.46472 * 217.87933 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1559 2.6098 0.0002 7 6 5.6858 2.6098 0.0002 8 6 6.1958 4.0523 0.0004 9 6 7.7028 4.0523 -0.0002 10 8 8.3092 3.0020 -0.0002 11 7 8.3766 5.2195 0.0003 12 6 9.8416 5.2196 -0.0008 13 6 10.3516 6.6621 -0.0006 14 8 9.6938 7.4971 -0.9556 15 6 11.8813 6.7888 -0.0011 16 7 11.7377 7.9007 0.9508 17 6 12.4589 9.0176 1.2785 18 1 13.3163 9.2999 0.6855 19 6 12.0879 9.7872 2.3725 20 7 12.5769 11.0002 2.5200 21 14 10.9005 9.0983 3.6395 22 1 9.5085 9.4383 3.2497 23 1 11.0494 7.6223 3.7062 24 1 11.1999 9.6867 4.9697 25 6 10.4819 7.2813 1.4008 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 4.0088 0.6536 -0.8908 31 1 4.0096 0.6533 0.8892 32 1 3.7928 3.1230 0.8907 33 1 3.7921 3.1242 -0.8894 34 1 6.0492 2.0964 -0.8900 35 1 6.0491 2.0955 0.8900 36 1 5.8325 4.5661 0.8904 37 1 5.8325 4.5662 -0.8896 38 1 7.8917 6.0596 0.0007 39 1 10.2043 4.7065 -0.8915 40 1 10.2056 4.7050 0.8884 41 1 8.7303 7.4149 -0.9524 42 1 12.2914 7.0924 -0.9643 43 1 12.3898 5.9209 0.4187 44 1 13.2491 11.3305 1.9035 45 1 10.6207 6.5429 2.1904 46 1 9.6997 8.0044 1.6318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699926299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:40 Heat of formation + Delta-G solvation = -72.689447 kcal Electronic energy + Delta-G solvation = -25362.411856 eV Core-core repulsion = 21481.946873 eV Total energy + Delta-G solvation = -3880.464983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.21823 -40.02119 -39.02323 -35.70463 -35.24244 -34.95625 -34.13530 -32.29066 -31.46178 -29.08595 -27.70639 -26.17032 -25.46613 -24.59915 -21.87241 -21.29387 -20.78512 -20.52233 -19.63551 -17.88486 -17.58763 -17.32931 -16.60133 -16.37441 -16.27163 -15.93615 -15.72695 -15.00263 -14.79663 -14.36597 -14.24526 -14.02842 -13.73900 -13.53731 -13.29402 -13.13972 -12.90850 -12.74109 -12.70201 -12.63068 -12.07275 -11.91571 -11.67174 -11.58612 -11.48489 -10.96731 -10.90301 -10.53295 -10.31336 -10.29778 -10.11069 -9.87844 -9.62651 -9.36989 -9.20217 -9.03351 -8.70472 -7.19871 -6.30927 -3.21895 2.22683 2.55123 2.73953 3.05165 3.37614 3.45278 3.60162 4.23770 4.27527 4.41457 4.51515 4.58371 4.58895 4.62646 4.72761 4.79688 4.89820 5.01275 5.01888 5.06922 5.13407 5.30300 5.36294 5.40084 5.43175 5.45906 5.53798 5.66211 5.83437 5.88476 5.92723 6.05544 6.08936 6.10784 6.20771 6.31830 6.35725 6.54474 6.97104 7.08985 7.32918 7.77681 7.85876 8.11512 8.24066 8.97316 9.50017 10.34576 11.19508 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025952 B = 0.001996 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.652103 B =14026.512729 C =14602.410216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.538 6.538 5 C -0.141 4.141 6 C -0.106 4.106 7 C -0.104 4.104 8 C -0.142 4.142 9 C 0.513 3.487 10 O -0.542 6.542 11 N -0.730 5.730 12 C 0.106 3.894 13 C 0.072 3.928 14 O -0.518 6.518 15 C 0.135 3.865 16 N -0.613 5.613 17 C -0.301 4.301 18 H 0.083 0.917 19 C -0.024 4.024 20 N -0.931 5.931 21 Si 1.064 2.936 22 H -0.295 1.295 23 H -0.283 1.283 24 H -0.295 1.295 25 C 0.080 3.920 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.398 0.602 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.362 0.638 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.262 0.738 45 H 0.054 0.946 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.097 -24.310 -6.209 33.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.296 3.704 4 O -0.415 6.415 5 C -0.181 4.181 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.182 4.182 9 C 0.300 3.700 10 O -0.419 6.419 11 N -0.383 5.383 12 C -0.019 4.019 13 C 0.029 3.971 14 O -0.322 6.322 15 C 0.007 3.993 16 N -0.340 5.340 17 C -0.427 4.427 18 H 0.100 0.900 19 C -0.223 4.223 20 N -0.573 5.573 21 Si 0.895 3.105 22 H -0.222 1.222 23 H -0.209 1.209 24 H -0.222 1.222 25 C -0.046 4.046 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.236 0.764 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.209 0.791 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.133 -23.494 -4.897 32.646 hybrid contribution 0.316 -0.585 -1.164 1.340 sum -21.817 -24.078 -6.061 33.052 Atomic orbital electron populations 1.21537 0.79731 1.02187 1.02379 1.45884 1.07851 1.08944 1.76610 1.20908 0.90644 0.83461 0.75337 1.90718 1.70653 1.31305 1.48788 1.21691 0.91105 1.00551 1.04708 1.21371 0.94681 0.94526 1.03775 1.21341 0.94082 0.95041 1.03708 1.21689 0.91656 1.00044 1.04822 1.20730 0.90272 0.83440 0.75578 1.90699 1.70623 1.31219 1.49404 1.46021 1.07690 1.08795 1.75820 1.21926 0.79305 0.97420 1.03265 1.23256 0.96203 0.86551 0.91121 1.86690 1.22092 1.65209 1.58184 1.22366 0.89673 0.91746 0.95466 1.45898 1.22849 1.22026 1.43252 1.20106 1.12164 0.98596 1.11865 0.89962 1.25761 1.03272 0.94997 0.98298 1.70892 1.30218 1.13952 1.42286 0.83757 0.75204 0.74990 0.76518 1.22237 1.20938 1.22187 1.23421 0.91181 0.95855 0.94176 0.90699 0.92234 0.92237 0.76408 0.88673 0.88653 0.91006 0.91038 0.91072 0.91024 0.88594 0.88663 0.76749 0.90613 0.90054 0.79150 0.92495 0.92948 0.92817 0.92910 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.70 59.85 0.64 1.02 16 2 N -0.74 -3.62 5.71 -67.07 -0.38 -4.00 16 3 C 0.51 3.95 7.83 -10.98 -0.09 3.87 16 4 O -0.54 -6.53 15.98 5.57 0.09 -6.44 16 5 C -0.14 -0.75 5.70 -27.88 -0.16 -0.91 16 6 C -0.11 -0.73 4.50 -26.74 -0.12 -0.85 16 7 C -0.10 -0.78 4.50 -26.74 -0.12 -0.90 16 8 C -0.14 -1.09 5.70 -27.88 -0.16 -1.25 16 9 C 0.51 5.84 7.83 -10.99 -0.09 5.76 16 10 O -0.54 -8.20 15.98 5.56 0.09 -8.11 16 11 N -0.73 -8.02 5.34 -60.30 -0.32 -8.34 16 12 C 0.11 1.43 5.43 -4.04 -0.02 1.41 16 13 C 0.07 1.21 1.74 -89.97 -0.16 1.05 16 14 O -0.52 -8.71 13.56 -35.23 -0.48 -9.19 16 15 C 0.13 2.67 8.10 -8.50 -0.07 2.60 16 16 N -0.61 -15.24 3.62 -184.56 -0.67 -15.91 16 17 C -0.30 -8.83 11.03 -15.06 -0.17 -9.00 16 18 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 19 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 20 N -0.93 -29.71 13.70 55.49 0.76 -28.95 16 21 Si 1.06 26.68 25.51 -169.99 -4.34 22.35 16 22 H -0.29 -7.05 6.97 56.52 0.39 -6.65 16 23 H -0.28 -6.54 5.65 56.52 0.32 -6.22 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 25 C 0.08 1.64 5.04 -8.36 -0.04 1.60 16 26 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.40 0.72 8.83 -40.82 -0.36 0.36 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 3.42 6.95 -40.82 -0.28 3.13 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.15 7.89 -51.93 -0.41 0.74 16 41 H 0.36 4.21 7.21 45.56 0.33 4.54 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 44 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 45 H 0.05 1.05 6.80 -51.93 -0.35 0.70 16 46 H 0.06 1.18 6.24 -51.93 -0.32 0.86 16 LS Contribution 377.24 15.07 5.69 5.69 Total: -1.00 -39.56 377.24 -7.18 -46.74 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.98 Total: 2.58 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.64 Total: 3.58 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.61 Total: -57.20 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.30 Total: -23.74 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.34 Total: 22.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.56 -7.18 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699926299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.945 kcal (2) G-P(sol) polarization free energy of solvation -39.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds