Wall clock time and date at job start Fri Apr 10 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99531 * 2 1 4 4 O 1.21270 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99657 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47480 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47464 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47182 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47199 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99898 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99991 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00059 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47266 * 179.97438 * 12 11 9 14 14 O 1.42899 * 113.41683 * 313.20046 * 13 12 11 15 15 C 1.53492 * 114.20723 * 179.97438 * 13 12 11 16 16 N 1.47069 * 87.98838 * 220.34480 * 15 13 12 17 17 C 1.36936 * 136.06301 * 207.07784 * 16 15 13 18 18 H 1.08006 * 119.99418 * 7.84113 * 17 16 15 19 19 C 1.38804 * 120.00237 * 187.83484 * 17 16 15 20 20 N 1.31625 * 119.99842 * 195.05312 * 19 17 16 21 21 Si 1.86804 * 120.00142 * 15.32461 * 19 17 16 22 22 H 1.48501 * 109.47266 * 269.72654 * 21 19 17 23 23 H 1.48499 * 109.46684 * 29.72784 * 21 19 17 24 24 H 1.48499 * 109.47124 * 149.72495 * 21 19 17 25 25 C 1.47077 * 87.88174 * 27.34535 * 16 15 13 26 26 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46978 * 299.99298 * 1 2 3 28 28 H 1.08998 * 109.47289 * 60.00039 * 1 2 3 29 29 H 0.96998 * 119.99923 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46908 * 59.99640 * 5 3 2 31 31 H 1.09007 * 109.47250 * 299.99939 * 5 3 2 32 32 H 1.09007 * 109.46695 * 59.99675 * 6 5 3 33 33 H 1.09007 * 109.46824 * 300.00194 * 6 5 3 34 34 H 1.08998 * 109.47188 * 60.00044 * 7 6 5 35 35 H 1.08998 * 109.47160 * 299.99904 * 7 6 5 36 36 H 1.09001 * 109.47292 * 60.00203 * 8 7 6 37 37 H 1.08998 * 109.47192 * 300.00126 * 8 7 6 38 38 H 0.96998 * 120.00211 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47277 * 59.99632 * 12 11 9 40 40 H 1.08998 * 109.46987 * 299.99544 * 12 11 9 41 41 H 0.96703 * 113.99756 * 46.79521 * 14 13 12 42 42 H 1.08997 * 113.46930 * 105.57004 * 15 13 12 43 43 H 1.09004 * 113.52079 * 335.13441 * 15 13 12 44 44 H 0.96999 * 120.00088 * 355.18627 * 20 19 17 45 45 H 1.08999 * 113.46528 * 87.43645 * 25 16 15 46 46 H 1.08996 * 113.46472 * 217.87933 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1559 2.6098 0.0002 7 6 5.6858 2.6098 0.0002 8 6 6.1958 4.0523 0.0004 9 6 7.7028 4.0523 -0.0002 10 8 8.3092 3.0020 -0.0002 11 7 8.3766 5.2195 0.0003 12 6 9.8416 5.2196 -0.0008 13 6 10.3516 6.6621 -0.0006 14 8 9.6938 7.4971 -0.9556 15 6 11.8813 6.7888 -0.0011 16 7 11.7377 7.9007 0.9508 17 6 12.4589 9.0176 1.2785 18 1 13.3163 9.2999 0.6855 19 6 12.0879 9.7872 2.3725 20 7 12.5769 11.0002 2.5200 21 14 10.9005 9.0983 3.6395 22 1 9.5085 9.4383 3.2497 23 1 11.0494 7.6223 3.7062 24 1 11.1999 9.6867 4.9697 25 6 10.4819 7.2813 1.4008 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 4.0088 0.6536 -0.8908 31 1 4.0096 0.6533 0.8892 32 1 3.7928 3.1230 0.8907 33 1 3.7921 3.1242 -0.8894 34 1 6.0492 2.0964 -0.8900 35 1 6.0491 2.0955 0.8900 36 1 5.8325 4.5661 0.8904 37 1 5.8325 4.5662 -0.8896 38 1 7.8917 6.0596 0.0007 39 1 10.2043 4.7065 -0.8915 40 1 10.2056 4.7050 0.8884 41 1 8.7303 7.4149 -0.9524 42 1 12.2914 7.0924 -0.9643 43 1 12.3898 5.9209 0.4187 44 1 13.2491 11.3305 1.9035 45 1 10.6207 6.5429 2.1904 46 1 9.6997 8.0044 1.6318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699926299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:39 Heat of formation + Delta-G solvation = -107.616063 kcal Electronic energy + Delta-G solvation = -25363.926387 eV Core-core repulsion = 21481.946873 eV Total energy + Delta-G solvation = -3881.979514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34234 -40.68006 -40.23816 -36.80556 -36.16552 -35.52422 -35.21729 -34.42654 -32.10188 -30.53743 -28.49247 -27.38403 -27.08728 -25.36071 -23.27215 -22.23796 -21.45494 -21.29182 -21.12926 -19.70177 -18.61330 -18.09698 -17.62060 -17.19761 -17.11041 -16.81060 -16.53442 -16.39961 -15.86263 -15.67693 -15.42516 -15.22721 -14.80505 -14.76926 -14.68206 -14.12903 -14.02855 -13.59584 -13.41108 -13.38326 -13.12088 -13.07390 -12.78908 -12.50819 -12.32716 -12.16799 -12.02417 -11.90894 -11.81349 -11.45029 -11.38368 -11.00456 -10.93047 -10.78578 -10.62651 -10.11362 -10.10573 -9.26663 -8.64653 -5.47348 1.36973 1.50383 1.65326 1.67519 1.69693 2.11358 2.38542 2.53638 2.89196 3.01032 3.14391 3.33577 3.76398 3.77872 3.90843 3.95037 4.09502 4.28494 4.43431 4.44336 4.52646 4.56114 4.57895 4.61629 4.64709 4.66283 4.77038 4.80581 4.85995 4.91593 4.92479 4.96890 5.04288 5.13030 5.18191 5.34867 5.38493 5.46381 5.55987 5.93284 6.49863 6.58745 6.67824 6.77693 7.26354 7.30758 7.31350 8.24609 8.87285 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025952 B = 0.001996 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.652103 B =14026.512729 C =14602.410216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.729 5.729 3 C 0.503 3.497 4 O -0.591 6.591 5 C -0.136 4.136 6 C -0.099 4.099 7 C -0.097 4.097 8 C -0.138 4.138 9 C 0.514 3.486 10 O -0.581 6.581 11 N -0.723 5.723 12 C 0.120 3.880 13 C 0.106 3.894 14 O -0.538 6.538 15 C 0.124 3.876 16 N -0.650 5.650 17 C -0.292 4.292 18 H 0.045 0.955 19 C -0.086 4.086 20 N -0.968 5.968 21 Si 1.105 2.895 22 H -0.275 1.275 23 H -0.251 1.251 24 H -0.303 1.303 25 C 0.073 3.927 26 H 0.108 0.892 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.419 0.581 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.411 0.589 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.386 0.614 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.245 0.755 45 H 0.070 0.930 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.394 -27.314 -6.215 37.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.381 5.381 3 C 0.291 3.709 4 O -0.471 6.471 5 C -0.176 4.176 6 C -0.138 4.138 7 C -0.135 4.135 8 C -0.177 4.177 9 C 0.302 3.698 10 O -0.461 6.461 11 N -0.377 5.377 12 C -0.005 4.005 13 C 0.063 3.937 14 O -0.345 6.345 15 C -0.002 4.002 16 N -0.377 5.377 17 C -0.419 4.419 18 H 0.063 0.937 19 C -0.278 4.278 20 N -0.613 5.613 21 Si 0.929 3.071 22 H -0.201 1.201 23 H -0.175 1.175 24 H -0.231 1.231 25 C -0.052 4.052 26 H 0.127 0.873 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.256 0.744 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.249 0.751 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.236 0.764 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.468 -26.578 -4.952 36.463 hybrid contribution 1.054 0.279 -1.305 1.701 sum -23.413 -26.299 -6.258 35.763 Atomic orbital electron populations 1.21630 0.79476 1.04000 1.01135 1.45850 1.08205 1.09076 1.74979 1.21370 0.91654 0.83349 0.74515 1.90694 1.71756 1.33173 1.51489 1.21709 0.89345 1.00008 1.06514 1.21269 0.94134 0.95459 1.02897 1.21262 0.94182 0.94928 1.03132 1.21754 0.88724 1.00596 1.06641 1.21323 0.91562 0.82623 0.74270 1.90690 1.71633 1.32570 1.51193 1.45930 1.06581 1.09661 1.75577 1.21606 0.80941 0.94389 1.03576 1.22698 0.94256 0.88095 0.88680 1.86647 1.24422 1.65586 1.57822 1.22666 0.92607 0.90887 0.94013 1.45934 1.24470 1.22545 1.44783 1.19938 1.10942 1.00371 1.10668 0.93731 1.27186 1.05363 0.94676 1.00539 1.71013 1.31616 1.15806 1.42870 0.83290 0.74171 0.76172 0.73439 1.20091 1.17545 1.23086 1.23688 0.88908 0.95858 0.96775 0.87347 0.93545 0.93483 0.74400 0.86711 0.86817 0.92000 0.91843 0.91545 0.91703 0.86885 0.86585 0.75149 0.90175 0.90005 0.76364 0.93493 0.90297 0.94588 0.91231 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.70 127.77 1.37 1.99 16 2 N -0.73 -5.77 5.71 -484.51 -2.77 -8.54 16 3 C 0.50 7.15 7.83 87.66 0.69 7.84 16 4 O -0.59 -14.23 15.98 -3.00 -0.05 -14.28 16 5 C -0.14 -1.15 5.70 29.85 0.17 -0.98 16 6 C -0.10 -1.18 4.50 30.59 0.14 -1.04 16 7 C -0.10 -1.21 4.50 30.59 0.14 -1.07 16 8 C -0.14 -1.65 5.70 29.85 0.17 -1.48 16 9 C 0.51 10.03 7.83 87.66 0.69 10.72 16 10 O -0.58 -16.08 15.98 -3.03 -0.05 -16.13 16 11 N -0.72 -13.16 5.34 -463.07 -2.47 -15.63 16 12 C 0.12 2.84 5.43 86.38 0.47 3.31 16 13 C 0.11 3.25 1.74 -10.37 -0.02 3.23 16 14 O -0.54 -16.57 13.56 -148.98 -2.02 -18.60 16 15 C 0.12 4.72 8.10 83.18 0.67 5.39 16 16 N -0.65 -31.69 3.62 -738.30 -2.67 -34.37 16 17 C -0.29 -17.47 11.03 84.03 0.93 -16.54 16 18 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 19 C -0.09 -5.24 5.50 84.86 0.47 -4.77 16 20 N -0.97 -63.80 13.70 21.65 0.30 -63.50 16 21 Si 1.10 53.03 25.51 68.60 1.75 54.78 16 22 H -0.27 -12.18 6.97 99.48 0.69 -11.48 16 23 H -0.25 -10.58 5.65 99.48 0.56 -10.01 16 24 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 25 C 0.07 2.77 5.04 83.27 0.42 3.19 16 26 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.42 0.36 8.83 -92.71 -0.82 -0.45 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.86 8.10 -2.38 -0.02 0.84 16 33 H 0.06 0.86 8.10 -2.38 -0.02 0.84 16 34 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 5.32 6.95 -92.71 -0.64 4.67 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 2.00 7.89 -2.39 -0.02 1.98 16 41 H 0.39 7.57 7.21 -74.06 -0.53 7.04 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 44 H 0.24 16.30 8.73 -92.71 -0.81 15.49 16 45 H 0.07 2.47 6.80 -2.39 -0.02 2.46 16 46 H 0.05 2.05 6.24 -2.39 -0.01 2.03 16 Total: -1.00 -89.34 377.24 -2.88 -92.22 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -1.19 Total: 14.26 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.29 Total: 9.79 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -7.62 Total: -122.04 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -2.12 Total: -49.01 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.75 Total: 54.78 kcal Total: -89.34 -2.88 -92.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699926299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.393 kcal (2) G-P(sol) polarization free energy of solvation -89.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds