Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46922 * 2 1 4 4 H 1.08995 * 109.47082 * 57.43609 * 3 2 1 5 5 C 1.50700 * 109.47176 * 177.43582 * 3 2 1 6 6 O 1.21281 * 120.00394 * 114.90209 * 5 3 2 7 7 N 1.34782 * 120.00122 * 294.90586 * 5 3 2 8 8 C 1.46927 * 120.63441 * 177.04329 * 7 5 3 9 9 C 1.53190 * 108.77537 * 233.63336 * 8 7 5 10 10 C 1.53043 * 109.30964 * 305.36376 * 9 8 7 11 11 O 1.42902 * 109.46094 * 301.34387 * 10 9 8 12 12 C 1.52999 * 109.45632 * 181.39020 * 10 9 8 13 13 N 1.46506 * 109.47086 * 185.00063 * 12 10 9 14 14 C 1.36942 * 120.00061 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99657 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99817 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99948 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47317 * 89.99856 * 18 16 14 20 20 H 1.48501 * 109.47057 * 210.00166 * 18 16 14 21 21 H 1.48498 * 109.46901 * 330.00038 * 18 16 14 22 22 C 1.53034 * 109.53960 * 61.36891 * 10 9 8 23 23 C 1.46928 * 120.62470 * 357.06858 * 7 5 3 24 24 N 1.46901 * 109.47556 * 297.43449 * 3 2 1 25 25 C 1.46896 * 111.00538 * 179.70620 * 24 3 2 26 26 C 1.46903 * 110.99815 * 303.65954 * 24 3 2 27 27 H 1.09000 * 109.47025 * 305.01641 * 1 2 3 28 28 H 1.08996 * 109.47613 * 65.01907 * 1 2 3 29 29 H 1.09003 * 109.47505 * 185.02119 * 1 2 3 30 30 H 1.09003 * 109.46721 * 240.00363 * 2 1 3 31 31 H 1.08996 * 109.47502 * 120.00711 * 2 1 3 32 32 H 1.09002 * 109.58294 * 113.84153 * 8 7 5 33 33 H 1.08998 * 109.58550 * 353.42021 * 8 7 5 34 34 H 1.08996 * 109.50239 * 65.31748 * 9 8 7 35 35 H 1.09000 * 109.49518 * 185.41916 * 9 8 7 36 36 H 0.96698 * 113.99710 * 180.02562 * 11 10 9 37 37 H 1.08998 * 109.47240 * 304.99610 * 12 10 9 38 38 H 1.09006 * 109.47555 * 64.99971 * 12 10 9 39 39 H 0.96998 * 119.99526 * 359.97438 * 13 12 10 40 40 H 0.96998 * 119.99540 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.49755 * 178.68142 * 22 10 9 42 42 H 1.09007 * 109.49909 * 58.58577 * 22 10 9 43 43 H 1.09004 * 109.58456 * 246.15426 * 23 7 5 44 44 H 1.08991 * 109.58909 * 6.58176 * 23 7 5 45 45 H 1.08999 * 109.47174 * 65.30699 * 25 24 3 46 46 H 1.08995 * 109.47444 * 185.31080 * 25 24 3 47 47 H 1.09005 * 109.46775 * 305.31159 * 25 24 3 48 48 H 1.09000 * 109.47110 * 64.34757 * 26 24 3 49 49 H 1.09003 * 109.46882 * 184.34399 * 26 24 3 50 50 H 1.08997 * 109.47559 * 304.34604 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6395 1.9694 0.8661 5 6 3.5456 1.4430 0.0636 6 8 4.1918 1.8712 -0.8691 7 7 4.1741 0.9675 1.1569 8 6 5.6410 0.9016 1.2079 9 6 6.0580 -0.5277 1.5685 10 6 5.3646 -0.9447 2.8675 11 8 5.7228 -0.0366 3.9112 12 6 5.8057 -2.3591 3.2493 13 7 5.0536 -2.8045 4.4251 14 6 5.2795 -4.0482 4.9517 15 1 6.0125 -4.7006 4.5005 16 6 4.5673 -4.4700 6.0660 17 7 3.6744 -3.6747 6.6161 18 14 4.8761 -6.1663 6.7848 19 1 5.9473 -6.0822 7.8096 20 1 3.6290 -6.6724 7.4125 21 1 5.2972 -7.0929 5.7034 22 6 3.8474 -0.9199 2.6686 23 6 3.4052 0.5048 2.3204 24 7 1.6015 2.1169 -1.2292 25 6 2.0680 3.5095 -1.2608 26 6 2.0507 1.3842 -2.4206 27 1 -0.3633 0.5897 0.8416 28 1 -0.3634 0.4340 -0.9315 29 1 -0.3634 -1.0237 0.0899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 6.0117 1.5925 1.9650 33 1 6.0527 1.1677 0.2344 34 1 5.7659 -1.2053 0.7664 35 1 7.1388 -0.5680 1.7039 36 1 5.3190 -0.2406 4.7657 37 1 5.6138 -3.0366 2.4173 38 1 6.8713 -2.3580 3.4787 39 1 4.3956 -2.2183 4.8304 40 1 3.1770 -3.9693 7.3950 41 1 3.3548 -1.2396 3.5869 42 1 3.5760 -1.5940 1.8560 43 1 3.5937 1.1634 3.1683 44 1 2.3420 0.5092 2.0809 45 1 3.1565 3.5269 -1.3161 46 1 1.6518 4.0125 -2.1336 47 1 1.7420 4.0224 -0.3559 48 1 1.5726 0.4050 -2.4466 49 1 1.7798 1.9446 -3.3154 50 1 3.1329 1.2592 -2.3838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700306682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -56.532053 kcal Electronic energy + Delta-G solvation = -28516.765084 eV Core-core repulsion = 24772.833833 eV Total energy + Delta-G solvation = -3743.931251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96244 -39.03799 -36.87856 -35.69965 -34.09988 -33.23893 -31.91605 -31.17928 -30.36843 -28.13196 -27.52802 -26.42884 -24.03346 -23.53954 -23.17480 -22.15991 -21.00017 -20.17789 -18.83641 -17.67147 -17.39580 -16.46707 -15.97684 -15.59143 -15.40312 -15.00676 -14.94804 -14.63811 -14.26182 -14.20339 -13.85696 -13.65989 -13.31610 -13.18427 -12.91906 -12.68535 -12.50556 -12.38805 -12.10646 -11.94374 -11.84171 -11.78745 -11.67568 -11.49789 -11.14767 -11.10035 -11.03126 -10.94130 -10.87803 -10.78145 -10.37286 -10.27051 -10.13317 -9.71955 -9.46861 -8.98904 -8.57317 -8.22240 -7.05565 -5.88037 -3.17088 2.47833 2.96978 3.37739 3.43620 3.44575 3.78259 4.35058 4.48744 4.51065 4.65711 4.77948 4.84582 4.96007 5.05001 5.09796 5.14286 5.25065 5.35965 5.36534 5.43928 5.46831 5.48870 5.54437 5.58546 5.63480 5.74412 5.76954 5.83546 5.87714 5.91111 5.93799 5.97146 5.99350 6.03062 6.07671 6.22698 6.31423 6.33641 6.53407 6.64299 6.65773 6.76255 6.84302 7.38088 7.61385 8.02926 8.08139 8.30823 9.41963 9.95067 10.29514 11.34685 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.003328 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.338845 B = 8411.874437 C = 9160.424908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.065 3.935 4 H 0.105 0.895 5 C 0.488 3.512 6 O -0.548 6.548 7 N -0.601 5.601 8 C 0.117 3.883 9 C -0.116 4.116 10 C 0.131 3.869 11 O -0.561 6.561 12 C 0.128 3.872 13 N -0.730 5.730 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.157 4.157 23 C 0.102 3.898 24 N -0.513 5.513 25 C 0.008 3.992 26 C 0.003 3.997 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.383 0.617 37 H 0.025 0.975 38 H 0.029 0.971 39 H 0.381 0.619 40 H 0.256 0.744 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 11.891 -13.683 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.047 4.047 4 H 0.123 0.877 5 C 0.276 3.724 6 O -0.427 6.427 7 N -0.333 5.333 8 C -0.006 4.006 9 C -0.154 4.154 10 C 0.090 3.910 11 O -0.369 6.369 12 C 0.000 4.000 13 N -0.376 5.376 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.582 5.582 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.196 4.196 23 C -0.021 4.021 24 N -0.235 5.235 25 C -0.140 4.140 26 C -0.145 4.145 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.232 0.768 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.072 12.236 -14.642 19.511 hybrid contribution 0.509 -1.173 1.218 1.766 sum -3.563 11.064 -13.424 17.757 Atomic orbital electron populations 1.21637 0.94029 1.01420 1.02711 1.21820 0.97803 0.93147 1.03545 1.21975 0.89208 0.97875 0.95646 0.87680 1.22040 0.91590 0.77014 0.81798 1.90568 1.68068 1.47490 1.36566 1.48324 1.07303 1.61877 1.15842 1.21513 0.79427 0.97126 1.02520 1.21837 1.01270 0.96572 0.95760 1.21274 0.92429 0.89725 0.87600 1.86374 1.74785 1.54134 1.21563 1.21328 0.95727 0.91825 0.91114 1.42326 1.46562 1.17272 1.31403 1.19202 1.17693 0.91937 1.08403 0.91177 1.24724 0.98956 0.98498 0.98544 1.69628 1.27867 1.36304 1.24422 0.86175 0.77068 0.83836 0.79014 1.21661 1.21707 1.20761 1.22551 0.97391 0.95695 1.03930 1.21974 0.95832 0.96172 0.88088 1.62504 1.57191 1.02628 1.01221 1.22583 1.00900 0.88635 1.01908 1.22680 1.01339 0.98520 0.91981 0.92637 0.91697 0.92728 0.91187 0.89935 0.90741 0.89608 0.90568 0.90054 0.76842 0.95677 0.95314 0.78444 0.93403 0.88835 0.90734 0.90603 0.89253 0.92502 0.91639 0.92177 0.91686 0.91949 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.71 37.16 0.36 -0.89 16 2 C -0.13 -1.25 4.58 -26.74 -0.12 -1.37 16 3 C 0.07 0.70 1.41 -68.87 -0.10 0.60 16 4 H 0.11 1.04 7.55 -51.93 -0.39 0.65 16 5 C 0.49 6.31 6.39 -10.98 -0.07 6.24 16 6 O -0.55 -8.38 11.04 5.56 0.06 -8.32 16 7 N -0.60 -7.52 2.97 -172.77 -0.51 -8.03 16 8 C 0.12 1.52 6.19 -3.71 -0.02 1.50 16 9 C -0.12 -1.55 5.11 -26.61 -0.14 -1.69 16 10 C 0.13 1.98 0.71 -90.58 -0.06 1.92 16 11 O -0.56 -8.84 11.70 -35.23 -0.41 -9.25 16 12 C 0.13 2.43 5.43 -4.04 -0.02 2.41 16 13 N -0.73 -16.94 5.07 -59.90 -0.30 -17.24 16 14 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 18 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.16 -2.18 4.65 -26.61 -0.12 -2.31 16 23 C 0.10 1.19 5.26 -3.71 -0.02 1.17 16 24 N -0.51 -5.58 4.48 -244.59 -1.10 -6.68 16 25 C 0.01 0.08 9.14 60.06 0.55 0.63 16 26 C 0.00 0.03 8.72 60.07 0.52 0.55 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 31 H 0.08 0.84 4.79 -51.93 -0.25 0.59 16 32 H 0.07 1.00 7.81 -51.93 -0.41 0.60 16 33 H 0.09 1.15 7.02 -51.93 -0.36 0.79 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.38 5.98 8.19 45.56 0.37 6.36 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.38 8.94 5.55 -40.82 -0.23 8.71 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.09 1.47 6.53 -51.93 -0.34 1.13 16 42 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 43 H 0.08 0.89 7.81 -51.93 -0.41 0.49 16 44 H 0.09 0.89 4.30 -51.93 -0.22 0.67 16 45 H 0.06 0.72 5.70 -51.93 -0.30 0.43 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 48 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 49 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 50 H 0.06 0.80 5.42 -51.93 -0.28 0.52 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -29.84 370.28 -8.10 -37.94 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -7.62 Total: 13.44 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 0.51 Total: 1.76 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -1.19 Total: -57.85 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.35 Total: -17.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.84 -8.10 -37.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700306682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.589 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds