Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46922 * 2 1 4 4 H 1.08995 * 109.47082 * 57.43609 * 3 2 1 5 5 C 1.50700 * 109.47176 * 177.43582 * 3 2 1 6 6 O 1.21281 * 120.00394 * 114.90209 * 5 3 2 7 7 N 1.34782 * 120.00122 * 294.90586 * 5 3 2 8 8 C 1.46927 * 120.63441 * 177.04329 * 7 5 3 9 9 C 1.53190 * 108.77537 * 233.63336 * 8 7 5 10 10 C 1.53043 * 109.30964 * 305.36376 * 9 8 7 11 11 O 1.42902 * 109.46094 * 301.34387 * 10 9 8 12 12 C 1.52999 * 109.45632 * 181.39020 * 10 9 8 13 13 N 1.46506 * 109.47086 * 185.00063 * 12 10 9 14 14 C 1.36942 * 120.00061 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99657 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99817 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99948 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47317 * 89.99856 * 18 16 14 20 20 H 1.48501 * 109.47057 * 210.00166 * 18 16 14 21 21 H 1.48498 * 109.46901 * 330.00038 * 18 16 14 22 22 C 1.53034 * 109.53960 * 61.36891 * 10 9 8 23 23 C 1.46928 * 120.62470 * 357.06858 * 7 5 3 24 24 N 1.46901 * 109.47556 * 297.43449 * 3 2 1 25 25 C 1.46896 * 111.00538 * 179.70620 * 24 3 2 26 26 C 1.46903 * 110.99815 * 303.65954 * 24 3 2 27 27 H 1.09000 * 109.47025 * 305.01641 * 1 2 3 28 28 H 1.08996 * 109.47613 * 65.01907 * 1 2 3 29 29 H 1.09003 * 109.47505 * 185.02119 * 1 2 3 30 30 H 1.09003 * 109.46721 * 240.00363 * 2 1 3 31 31 H 1.08996 * 109.47502 * 120.00711 * 2 1 3 32 32 H 1.09002 * 109.58294 * 113.84153 * 8 7 5 33 33 H 1.08998 * 109.58550 * 353.42021 * 8 7 5 34 34 H 1.08996 * 109.50239 * 65.31748 * 9 8 7 35 35 H 1.09000 * 109.49518 * 185.41916 * 9 8 7 36 36 H 0.96698 * 113.99710 * 180.02562 * 11 10 9 37 37 H 1.08998 * 109.47240 * 304.99610 * 12 10 9 38 38 H 1.09006 * 109.47555 * 64.99971 * 12 10 9 39 39 H 0.96998 * 119.99526 * 359.97438 * 13 12 10 40 40 H 0.96998 * 119.99540 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.49755 * 178.68142 * 22 10 9 42 42 H 1.09007 * 109.49909 * 58.58577 * 22 10 9 43 43 H 1.09004 * 109.58456 * 246.15426 * 23 7 5 44 44 H 1.08991 * 109.58909 * 6.58176 * 23 7 5 45 45 H 1.08999 * 109.47174 * 65.30699 * 25 24 3 46 46 H 1.08995 * 109.47444 * 185.31080 * 25 24 3 47 47 H 1.09005 * 109.46775 * 305.31159 * 25 24 3 48 48 H 1.09000 * 109.47110 * 64.34757 * 26 24 3 49 49 H 1.09003 * 109.46882 * 184.34399 * 26 24 3 50 50 H 1.08997 * 109.47559 * 304.34604 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6395 1.9694 0.8661 5 6 3.5456 1.4430 0.0636 6 8 4.1918 1.8712 -0.8691 7 7 4.1741 0.9675 1.1569 8 6 5.6410 0.9016 1.2079 9 6 6.0580 -0.5277 1.5685 10 6 5.3646 -0.9447 2.8675 11 8 5.7228 -0.0366 3.9112 12 6 5.8057 -2.3591 3.2493 13 7 5.0536 -2.8045 4.4251 14 6 5.2795 -4.0482 4.9517 15 1 6.0125 -4.7006 4.5005 16 6 4.5673 -4.4700 6.0660 17 7 3.6744 -3.6747 6.6161 18 14 4.8761 -6.1663 6.7848 19 1 5.9473 -6.0822 7.8096 20 1 3.6290 -6.6724 7.4125 21 1 5.2972 -7.0929 5.7034 22 6 3.8474 -0.9199 2.6686 23 6 3.4052 0.5048 2.3204 24 7 1.6015 2.1169 -1.2292 25 6 2.0680 3.5095 -1.2608 26 6 2.0507 1.3842 -2.4206 27 1 -0.3633 0.5897 0.8416 28 1 -0.3634 0.4340 -0.9315 29 1 -0.3634 -1.0237 0.0899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 6.0117 1.5925 1.9650 33 1 6.0527 1.1677 0.2344 34 1 5.7659 -1.2053 0.7664 35 1 7.1388 -0.5680 1.7039 36 1 5.3190 -0.2406 4.7657 37 1 5.6138 -3.0366 2.4173 38 1 6.8713 -2.3580 3.4787 39 1 4.3956 -2.2183 4.8304 40 1 3.1770 -3.9693 7.3950 41 1 3.3548 -1.2396 3.5869 42 1 3.5760 -1.5940 1.8560 43 1 3.5937 1.1634 3.1683 44 1 2.3420 0.5092 2.0809 45 1 3.1565 3.5269 -1.3161 46 1 1.6518 4.0125 -2.1336 47 1 1.7420 4.0224 -0.3559 48 1 1.5726 0.4050 -2.4466 49 1 1.7798 1.9446 -3.3154 50 1 3.1329 1.2592 -2.3838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700306682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = -78.140902 kcal Electronic energy + Delta-G solvation = -28517.702114 eV Core-core repulsion = 24772.833833 eV Total energy + Delta-G solvation = -3744.868281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97612 -40.21633 -37.87295 -36.89238 -35.83108 -34.13806 -33.40220 -32.39376 -31.81212 -29.15592 -28.40142 -27.79928 -25.58555 -24.62322 -24.16705 -23.46829 -22.06688 -21.30785 -19.88576 -19.44790 -18.49183 -17.41007 -17.27093 -16.75472 -16.60606 -16.40050 -16.02919 -15.74235 -15.62327 -15.44506 -15.02554 -14.93543 -14.61651 -14.34676 -14.17937 -14.02118 -13.57168 -13.31453 -13.21679 -13.02403 -12.92459 -12.82230 -12.76007 -12.66932 -12.57239 -12.45064 -12.27950 -12.22730 -12.07229 -11.98136 -11.74991 -11.59922 -11.34387 -11.21896 -10.97356 -10.75097 -9.65041 -9.14628 -9.01670 -7.96485 -5.24446 1.47740 1.48702 1.49338 1.57275 1.96549 2.55138 2.93367 3.24655 3.39813 3.42292 3.63569 3.73789 3.82480 3.89347 4.01923 4.03470 4.22288 4.25155 4.30707 4.40132 4.47048 4.54142 4.57023 4.64956 4.68424 4.69938 4.73528 4.80347 4.83593 4.87729 4.93401 4.98098 5.05085 5.08551 5.10203 5.15311 5.20864 5.24641 5.31541 5.49312 5.50748 5.52756 5.89958 5.98916 6.25760 6.37844 6.74070 7.07547 7.34103 8.04193 8.30497 9.25949 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.003328 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.338845 B = 8411.874437 C = 9160.424908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.069 3.931 4 H 0.119 0.881 5 C 0.486 3.514 6 O -0.572 6.572 7 N -0.601 5.601 8 C 0.122 3.878 9 C -0.110 4.110 10 C 0.139 3.861 11 O -0.563 6.563 12 C 0.128 3.872 13 N -0.735 5.735 14 C -0.248 4.248 15 H 0.069 0.931 16 C -0.065 4.065 17 N -0.961 5.961 18 Si 0.967 3.033 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.274 1.274 22 C -0.149 4.149 23 C 0.110 3.890 24 N -0.511 5.511 25 C 0.010 3.990 26 C 0.007 3.993 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.382 0.618 37 H 0.026 0.974 38 H 0.019 0.981 39 H 0.378 0.622 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.034 0.966 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 12.107 -14.202 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C -0.044 4.044 4 H 0.137 0.863 5 C 0.274 3.726 6 O -0.453 6.453 7 N -0.333 5.333 8 C 0.000 4.000 9 C -0.148 4.148 10 C 0.098 3.902 11 O -0.370 6.370 12 C 0.001 3.999 13 N -0.380 5.380 14 C -0.380 4.380 15 H 0.087 0.913 16 C -0.258 4.258 17 N -0.611 5.611 18 Si 0.797 3.203 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.199 1.199 22 C -0.187 4.187 23 C -0.012 4.012 24 N -0.233 5.233 25 C -0.138 4.138 26 C -0.141 4.141 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.231 0.769 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.213 0.787 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.052 0.948 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.816 12.456 -15.184 20.221 hybrid contribution 0.800 -1.223 1.322 1.970 sum -4.016 11.234 -13.862 18.288 Atomic orbital electron populations 1.21598 0.92990 1.01801 1.02912 1.21788 0.98573 0.92405 1.03132 1.22069 0.87536 0.98585 0.96191 0.86288 1.22491 0.92497 0.76343 0.81259 1.90574 1.68817 1.48500 1.37395 1.48368 1.07101 1.61748 1.16068 1.21399 0.79956 0.96544 1.02148 1.21798 1.01405 0.96943 0.94700 1.21209 0.93564 0.87409 0.88062 1.86378 1.74943 1.53982 1.21704 1.21441 0.94657 0.94227 0.89569 1.42409 1.46841 1.16358 1.32386 1.19523 1.17067 0.93122 1.08290 0.91298 1.25423 0.99335 1.01743 0.99300 1.69752 1.28848 1.37703 1.24784 0.85240 0.76543 0.80299 0.78248 1.21663 1.22013 1.19875 1.22420 0.96073 0.97218 1.03034 1.21963 0.96833 0.94525 0.87923 1.62554 1.56757 1.02776 1.01230 1.22573 0.99442 0.88707 1.03046 1.22635 0.99823 0.99185 0.92477 0.91930 0.91882 0.92377 0.91875 0.90084 0.91024 0.89967 0.90134 0.89618 0.76867 0.95623 0.96305 0.78735 0.93856 0.90531 0.90819 0.90288 0.87122 0.94776 0.90447 0.91149 0.90923 0.90984 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.71 71.98 0.70 -1.41 16 2 C -0.12 -2.18 4.58 30.59 0.14 -2.04 16 3 C 0.07 1.34 1.41 44.17 0.06 1.40 16 4 H 0.12 2.02 7.55 -2.39 -0.02 2.01 16 5 C 0.49 11.95 6.39 87.66 0.56 12.51 16 6 O -0.57 -17.21 11.04 -3.03 -0.03 -17.24 16 7 N -0.60 -14.21 2.97 -818.90 -2.43 -16.65 16 8 C 0.12 3.06 6.19 86.36 0.53 3.60 16 9 C -0.11 -2.83 5.11 30.67 0.16 -2.67 16 10 C 0.14 4.10 0.71 -10.77 -0.01 4.09 16 11 O -0.56 -17.31 11.70 -148.98 -1.74 -19.06 16 12 C 0.13 4.83 5.43 86.38 0.47 5.30 16 13 N -0.73 -34.10 5.07 -343.43 -1.74 -35.84 16 14 C -0.25 -13.21 9.99 84.03 0.84 -12.37 16 15 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 16 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 17 N -0.96 -54.90 13.06 21.65 0.28 -54.61 16 18 Si 0.97 44.47 29.55 68.60 2.03 46.49 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C -0.15 -3.99 4.65 30.67 0.14 -3.84 16 23 C 0.11 2.37 5.26 86.36 0.45 2.82 16 24 N -0.51 -10.21 4.48 -927.75 -4.16 -14.37 16 25 C 0.01 0.20 9.14 127.69 1.17 1.37 16 26 C 0.01 0.14 8.72 127.69 1.11 1.25 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.02 7.83 -2.39 -0.02 1.00 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.23 6.30 -2.39 -0.02 1.22 16 31 H 0.08 1.48 4.79 -2.39 -0.01 1.47 16 32 H 0.07 1.85 7.81 -2.39 -0.02 1.83 16 33 H 0.08 2.15 7.02 -2.39 -0.02 2.14 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.38 11.85 8.19 -74.06 -0.61 11.24 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.38 17.84 5.55 -92.71 -0.51 17.33 16 40 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.08 2.36 6.53 -2.38 -0.02 2.35 16 42 H 0.07 1.99 7.68 -2.38 -0.02 1.97 16 43 H 0.08 1.71 7.81 -2.39 -0.02 1.70 16 44 H 0.11 1.94 4.30 -2.39 -0.01 1.93 16 45 H 0.03 0.84 5.70 -2.39 -0.01 0.83 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 48 H 0.07 1.35 6.44 -2.39 -0.02 1.33 16 49 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 50 H 0.04 0.98 5.42 -2.39 -0.01 0.97 16 Total: -1.00 -62.35 370.28 -1.17 -63.52 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.17 Total: 40.82 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 6.80 Total: 6.93 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -8.05 Total: -121.47 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.78 Total: -36.30 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.35 -1.17 -63.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700306682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.618 kcal (2) G-P(sol) polarization free energy of solvation -62.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds