Wall clock time and date at job start Fri Apr 10 2020 18:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99807 * 2 1 4 4 C 1.50702 * 109.47112 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99861 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00046 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99846 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46823 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.46970 * 179.97438 * 8 7 6 10 10 H 1.08996 * 110.35715 * 307.14949 * 9 8 7 11 11 C 1.54597 * 110.30558 * 69.29148 * 9 8 7 12 12 C 1.54940 * 102.92214 * 140.86956 * 11 9 8 13 13 N 1.48527 * 103.22612 * 322.58629 * 12 11 9 14 14 C 1.46902 * 110.99964 * 159.71987 * 13 12 11 15 15 C 1.50702 * 109.47027 * 52.60122 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99804 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00499 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99671 * 179.72159 * 18 17 15 21 21 N 1.31414 * 120.00152 * 0.27554 * 20 18 17 22 22 Si 1.86803 * 119.99914 * 180.27723 * 20 18 17 23 23 H 1.48496 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99961 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00007 * 22 20 18 26 26 C 1.47896 * 105.82134 * 39.20939 * 13 12 11 27 27 H 1.08999 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47141 * 299.99413 * 1 2 3 29 29 H 1.08998 * 109.47620 * 59.99401 * 1 2 3 30 30 H 1.08997 * 109.47127 * 60.00442 * 3 2 1 31 31 H 1.09003 * 109.47567 * 300.00191 * 3 2 1 32 32 H 0.97001 * 119.99823 * 0.02562 * 6 4 3 33 33 H 1.09002 * 109.47179 * 60.00623 * 7 6 4 34 34 H 1.08992 * 109.47582 * 300.00171 * 7 6 4 35 35 H 1.09002 * 109.46473 * 60.00511 * 8 7 6 36 36 H 1.08992 * 109.47443 * 300.00576 * 8 7 6 37 37 H 1.09001 * 110.72499 * 259.22821 * 11 9 8 38 38 H 1.09008 * 110.72586 * 22.33599 * 11 9 8 39 39 H 1.09002 * 110.66618 * 204.14629 * 12 11 9 40 40 H 1.09002 * 110.66469 * 81.02379 * 12 11 9 41 41 H 1.09004 * 109.47131 * 292.60366 * 14 13 12 42 42 H 1.08994 * 109.47471 * 172.60116 * 14 13 12 43 43 H 0.97000 * 119.99715 * 359.97438 * 17 15 14 44 44 H 0.96991 * 119.99827 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.92297 * 94.01998 * 26 13 12 46 46 H 1.09008 * 109.91662 * 215.11899 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0917 0.0006 6 7 4.2764 2.2970 0.0002 7 6 5.7368 2.1813 0.0014 8 6 6.3591 3.5791 0.0000 9 6 7.8843 3.4583 0.0019 10 1 8.2126 2.8144 0.8177 11 6 8.3801 2.9028 -1.3530 12 6 9.6682 3.7236 -1.6135 13 7 9.3189 5.0746 -1.1047 14 6 10.5280 5.8588 -0.8201 15 6 11.4235 5.8590 -2.0322 16 8 11.0874 5.2647 -3.0347 17 7 12.5981 6.5195 -2.0022 18 6 13.4124 6.5200 -3.1051 19 1 13.1127 5.9916 -3.9980 20 6 14.6206 7.2058 -3.0761 21 7 14.9851 7.8492 -1.9898 22 14 15.7267 7.2130 -4.5815 23 1 15.0931 6.4198 -5.6651 24 1 15.9264 8.6105 -5.0422 25 1 17.0402 6.6141 -4.2334 26 6 8.5306 4.8505 0.1264 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.8592 3.1727 -0.0001 33 1 6.0591 1.6397 -0.8879 34 1 6.0578 1.6412 0.8920 35 1 6.0368 4.1210 0.8891 36 1 6.0380 4.1188 -0.8908 37 1 8.6094 1.8401 -1.2735 38 1 7.6422 3.0793 -2.1356 39 1 9.8921 3.7600 -2.6796 40 1 10.5082 3.3082 -1.0568 41 1 11.0581 5.4160 0.0232 42 1 10.2475 6.8832 -0.5755 43 1 12.8667 6.9950 -1.2006 44 1 15.8286 8.3276 -1.9696 45 1 9.1856 4.8792 0.9973 46 1 7.7586 5.6147 0.2173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753321701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:07 Heat of formation + Delta-G solvation = -141.513866 kcal Electronic energy + Delta-G solvation = -25266.566934 eV Core-core repulsion = 21383.117501 eV Total energy + Delta-G solvation = -3883.449433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95078 -40.66343 -39.29946 -38.41963 -36.52326 -35.90829 -34.10924 -33.28785 -31.34865 -30.05904 -29.00183 -27.75314 -26.62506 -25.77082 -23.62108 -22.37820 -21.82179 -21.05590 -20.76373 -19.87148 -18.36664 -17.85575 -17.66759 -17.32120 -16.99294 -16.62565 -16.37532 -16.26919 -16.04685 -15.69836 -15.65557 -15.39995 -14.94127 -14.72512 -14.18648 -14.05083 -13.88394 -13.53443 -13.38186 -13.29640 -13.04778 -12.92799 -12.80214 -12.42103 -12.36362 -12.28819 -12.27204 -12.11779 -11.78935 -11.63242 -11.51325 -11.39458 -10.88107 -10.75562 -10.15268 -10.11573 -10.00571 -9.27534 -8.47666 -5.96185 1.35715 1.41205 1.55293 1.56201 1.87604 2.03478 2.28282 2.91099 3.15473 3.19414 3.36013 3.66052 3.75473 3.82087 3.92027 4.20968 4.25141 4.26553 4.30591 4.31835 4.40354 4.44818 4.51330 4.54996 4.58904 4.65333 4.68661 4.76623 4.84498 4.88546 5.01183 5.06048 5.12331 5.24823 5.34606 5.40589 5.43104 5.43471 5.89254 6.01062 6.05912 6.17543 6.56689 6.60081 7.12381 7.23806 7.54807 8.11031 8.70028 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.048070 B = 0.001736 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.342938 B =16127.410775 C =16403.237761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.044 3.956 4 C 0.503 3.497 5 O -0.582 6.582 6 N -0.712 5.712 7 C 0.121 3.879 8 C -0.104 4.104 9 C -0.087 4.087 10 H 0.087 0.913 11 C -0.115 4.115 12 C 0.036 3.964 13 N -0.513 5.513 14 C 0.048 3.952 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.038 3.962 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.420 0.580 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.022 0.978 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.052 0.948 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.265 -6.149 10.261 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.035 4.035 4 C 0.290 3.710 5 O -0.461 6.461 6 N -0.367 5.367 7 C -0.002 4.002 8 C -0.142 4.142 9 C -0.106 4.106 10 H 0.105 0.895 11 C -0.153 4.153 12 C -0.091 4.091 13 N -0.237 5.237 14 C -0.084 4.084 15 C 0.225 3.775 16 O -0.501 6.501 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.090 4.090 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.258 0.742 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.132 -7.060 9.265 28.611 hybrid contribution 1.390 0.417 0.157 1.460 sum -24.742 -6.643 9.421 27.296 Atomic orbital electron populations 1.23028 0.78271 1.04082 1.01722 1.87968 1.22182 1.27066 1.95819 1.22414 0.88906 0.86680 1.05501 1.21013 0.90390 0.84104 0.75501 1.90723 1.75943 1.28869 1.50584 1.45772 1.06929 1.09164 1.74789 1.21334 0.78929 0.98404 1.01557 1.21733 0.93081 0.95014 1.04375 1.21897 0.95466 0.95773 0.97495 0.89456 1.22619 0.96165 0.98868 0.97671 1.23274 0.96408 0.88038 1.01402 1.64588 1.17320 1.14683 1.27140 1.21998 0.90862 1.01444 0.94076 1.20786 0.83058 0.82843 0.90797 1.90441 1.74886 1.48482 1.36266 1.41932 1.17100 1.46643 1.15345 1.19701 1.00348 1.31895 0.94301 0.90334 1.26029 0.98494 0.95498 1.01168 1.69675 1.24141 1.33526 1.28772 0.84872 0.77656 0.78324 0.77487 1.19870 1.19537 1.19641 1.23118 0.97654 0.97767 0.90437 0.89023 0.92031 0.92221 0.86956 0.87291 0.74216 0.92961 0.92155 0.88619 0.90323 0.90699 0.90889 0.90882 0.95938 0.91615 0.87174 0.77035 0.91299 0.92918 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.50 10.24 -129.94 -1.33 -8.83 16 3 C 0.04 0.49 6.42 71.24 0.46 0.95 16 4 C 0.50 9.58 7.91 87.66 0.69 10.27 16 5 O -0.58 -18.13 16.50 16.01 0.26 -17.87 16 6 N -0.71 -8.97 5.56 -463.06 -2.57 -11.55 16 7 C 0.12 1.91 5.54 86.38 0.48 2.39 16 8 C -0.10 -1.30 4.49 30.60 0.14 -1.17 16 9 C -0.09 -1.58 3.00 -9.91 -0.03 -1.61 16 10 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 11 C -0.12 -2.82 5.87 31.80 0.19 -2.64 16 12 C 0.04 1.25 5.30 86.65 0.46 1.71 16 13 N -0.51 -16.48 5.26 -887.56 -4.67 -21.15 16 14 C 0.05 1.67 5.52 85.56 0.47 2.14 16 15 C 0.44 21.03 7.49 87.66 0.66 21.69 16 16 O -0.61 -33.88 13.10 -3.07 -0.04 -33.92 16 17 N -0.57 -29.66 5.29 -306.97 -1.62 -31.29 16 18 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.76 13.05 21.67 0.28 -49.48 16 22 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.04 0.81 6.35 86.45 0.55 1.36 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.29 8.14 -2.38 -0.02 0.28 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.42 1.99 8.47 -92.71 -0.79 1.21 16 33 H 0.05 1.05 7.58 -2.39 -0.02 1.04 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 1.02 8.00 -2.39 -0.02 1.01 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.80 7.76 -2.38 -0.02 1.78 16 39 H 0.07 3.15 5.97 -2.39 -0.01 3.14 16 40 H 0.02 0.80 8.02 -2.39 -0.02 0.78 16 41 H 0.07 2.08 7.81 -2.38 -0.02 2.06 16 42 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.05 1.06 7.57 -2.39 -0.02 1.04 16 46 H 0.10 1.74 7.69 -2.38 -0.02 1.72 16 Total: -1.00 -80.49 377.59 -1.60 -82.09 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.53 Total: 28.65 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 6.59 Total: 18.15 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -8.58 Total: -113.46 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -1.11 Total: -60.62 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -80.49 -1.60 -82.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753321701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.427 kcal (2) G-P(sol) polarization free energy of solvation -80.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds