Wall clock time and date at job start Fri Apr 10 2020 18:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99877 * 2 1 4 4 C 1.50692 * 109.47130 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00316 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00121 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99768 * 0.02562 * 6 4 3 8 8 C 1.46503 * 120.00394 * 179.97438 * 6 4 3 9 9 C 1.50690 * 109.47441 * 270.00428 * 8 6 4 10 10 O 1.21278 * 119.99939 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00212 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00007 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.08998 * 110.64612 * 1.68341 * 13 11 9 15 15 C 1.55154 * 110.72211 * 125.02165 * 13 11 9 16 16 C 1.55132 * 101.49119 * 82.69543 * 15 13 11 17 17 N 1.47428 * 104.71757 * 37.29367 * 16 15 13 18 18 C 1.36935 * 125.64875 * 155.82175 * 17 16 15 19 19 H 1.08003 * 120.00312 * 199.12526 * 18 17 16 20 20 C 1.38812 * 119.99625 * 19.11600 * 18 17 16 21 21 N 1.31614 * 120.00374 * 28.60150 * 20 18 17 22 22 Si 1.86811 * 119.99834 * 208.32464 * 20 18 17 23 23 H 1.48498 * 109.46900 * 180.27913 * 22 20 18 24 24 H 1.48496 * 109.46817 * 300.27634 * 22 20 18 25 25 H 1.48496 * 109.46967 * 60.27718 * 22 20 18 26 26 C 1.47019 * 108.70668 * 335.55765 * 17 16 15 27 27 H 1.08991 * 109.47350 * 299.99736 * 1 2 3 28 28 H 1.09007 * 109.47018 * 60.00560 * 1 2 3 29 29 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46835 * 59.99547 * 3 2 1 31 31 H 1.08997 * 109.47024 * 300.00029 * 3 2 1 32 32 H 1.09005 * 109.47222 * 269.99710 * 7 6 4 33 33 H 1.09003 * 109.47226 * 29.99981 * 7 6 4 34 34 H 1.08997 * 109.47161 * 149.99855 * 7 6 4 35 35 H 1.08997 * 109.46948 * 149.99658 * 8 6 4 36 36 H 1.09004 * 109.46777 * 30.00558 * 8 6 4 37 37 H 1.08998 * 109.46888 * 269.99986 * 12 11 9 38 38 H 1.08999 * 109.46906 * 30.00340 * 12 11 9 39 39 H 1.09002 * 109.47269 * 150.00400 * 12 11 9 40 40 H 1.09000 * 111.01004 * 200.93782 * 15 13 11 41 41 H 1.09001 * 111.00875 * 324.74688 * 15 13 11 42 42 H 1.09002 * 110.49157 * 278.45940 * 16 15 13 43 43 H 1.08994 * 110.34886 * 156.06124 * 16 15 13 44 44 H 0.97003 * 120.00149 * 5.41435 * 21 20 18 45 45 H 1.08996 * 109.88711 * 120.69684 * 26 17 16 46 46 H 1.09000 * 109.88391 * 241.71885 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2764 2.2969 0.0013 7 6 3.6463 3.6195 0.0019 8 6 5.7368 2.1813 0.0025 9 6 6.2365 2.1416 1.4236 10 8 5.4502 2.2042 2.3448 11 7 7.5572 2.0376 1.6709 12 6 8.5071 1.9626 0.5581 13 6 8.0430 1.9995 3.0525 14 1 7.2096 2.0352 3.7540 15 6 8.9146 0.7387 3.2934 16 6 10.2897 1.2047 2.7470 17 7 10.3870 2.6229 3.1379 18 6 11.5496 3.3277 3.3016 19 1 11.5499 4.2436 3.8739 20 6 12.7279 2.8647 2.7320 21 7 12.6879 2.1413 1.6333 22 14 14.3708 3.2750 3.5208 23 1 15.4678 2.6727 2.7215 24 1 14.5434 4.7492 3.5665 25 1 14.4070 2.7294 4.9014 26 6 9.0290 3.1570 3.3167 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.4901 3.9481 -1.0256 33 1 2.6865 3.5645 0.5156 34 1 4.2934 4.3300 0.5162 35 1 6.1696 3.0399 -0.5111 36 1 6.0292 1.2655 -0.5113 37 1 8.6620 0.9195 0.2823 38 1 8.1092 2.5093 -0.2968 39 1 9.4571 2.4031 0.8609 40 1 8.9728 0.5010 4.3555 41 1 8.5375 -0.1115 2.7250 42 1 10.3220 1.1073 1.6618 43 1 11.0942 0.6290 3.2045 44 1 11.8436 1.9973 1.1778 45 1 8.9059 3.5233 4.3358 46 1 8.8526 3.9662 2.6081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753435879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:13 Heat of formation + Delta-G solvation = -63.243671 kcal Electronic energy + Delta-G solvation = -27225.304583 eV Core-core repulsion = 23345.249200 eV Total energy + Delta-G solvation = -3880.055383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56924 -39.55219 -37.92097 -37.37398 -35.55826 -34.54955 -32.39075 -30.38061 -29.17434 -28.48059 -27.90926 -26.74484 -26.19462 -25.45130 -24.06598 -21.34018 -20.25983 -19.62864 -18.68865 -17.67438 -17.59196 -17.38842 -16.94446 -16.54874 -16.04528 -15.69701 -15.24564 -14.83938 -14.68907 -14.39591 -13.78305 -13.75134 -13.36893 -13.30483 -13.18599 -12.97231 -12.76666 -12.57665 -12.48281 -12.16229 -12.09671 -11.89172 -11.76193 -11.71936 -11.01277 -10.77451 -10.64824 -10.47040 -10.26984 -10.14835 -10.03806 -9.96396 -9.83558 -9.56866 -8.83065 -8.42673 -8.35784 -6.95783 -6.14818 -3.19630 2.26776 2.47585 2.73222 3.24304 3.48198 3.53026 3.61208 3.70226 4.28390 4.55656 4.58984 4.65044 4.73171 4.85391 4.90190 4.95794 5.00686 5.11649 5.21030 5.25627 5.28480 5.31139 5.33543 5.37846 5.41314 5.59962 5.71446 5.81008 5.97735 6.07289 6.11083 6.15619 6.39363 6.44885 6.59688 6.61489 6.88857 6.96119 7.01325 7.05168 7.60444 7.78828 7.95069 8.31175 8.45888 8.97717 9.77133 10.33686 11.17968 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036161 B = 0.002668 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.127922 B =10492.750812 C =10564.692272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.514 6.514 6 N -0.600 5.600 7 C 0.079 3.921 8 C 0.100 3.900 9 C 0.498 3.502 10 O -0.543 6.543 11 N -0.593 5.593 12 C 0.066 3.934 13 C 0.127 3.873 14 H 0.101 0.899 15 C -0.146 4.146 16 C 0.136 3.864 17 N -0.601 5.601 18 C -0.337 4.337 19 H 0.063 0.937 20 C -0.023 4.023 21 N -0.913 5.913 22 Si 1.064 2.936 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.127 3.873 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.049 0.951 44 H 0.267 0.733 45 H 0.034 0.966 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.556 1.872 -6.664 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.388 6.388 6 N -0.335 5.335 7 C -0.064 4.064 8 C -0.026 4.026 9 C 0.284 3.716 10 O -0.420 6.420 11 N -0.326 5.326 12 C -0.077 4.077 13 C 0.023 3.977 14 H 0.119 0.881 15 C -0.185 4.185 16 C 0.010 3.990 17 N -0.328 5.328 18 C -0.465 4.465 19 H 0.080 0.920 20 C -0.225 4.225 21 N -0.554 5.554 22 Si 0.893 3.107 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.001 3.999 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -19.858 0.943 -6.265 20.844 hybrid contribution -1.768 0.755 0.130 1.927 sum -21.626 1.698 -6.135 22.543 Atomic orbital electron populations 1.22841 0.80333 1.03381 1.00087 1.88028 1.19811 1.25244 1.95402 1.22241 0.91460 0.86950 1.02511 1.20216 0.88772 0.84071 0.76273 1.90743 1.74399 1.26162 1.47457 1.47321 1.05338 1.06626 1.74243 1.21863 0.99075 0.83676 1.01738 1.21374 0.80486 1.05711 0.95067 1.21030 0.82244 0.76514 0.91819 1.90649 1.54879 1.50376 1.46131 1.47809 1.05615 1.71607 1.07564 1.22145 0.95416 1.01910 0.88231 1.22106 0.96787 0.96649 0.82112 0.88073 1.23188 0.97466 0.96316 1.01556 1.21803 0.93496 0.86150 0.97509 1.44577 1.00373 1.05630 1.82255 1.19696 0.86138 1.09372 1.31283 0.91958 1.25745 1.01365 0.99768 0.95629 1.70821 1.29024 1.42004 1.13523 0.83538 0.75980 0.75563 0.75583 1.21094 1.22030 1.22123 1.21662 0.85885 0.93971 0.98402 0.93748 0.93829 0.89037 0.89986 0.90209 0.92031 0.90926 0.90469 0.87211 0.86730 0.92395 0.91964 0.87986 0.90600 0.91493 0.94622 0.93288 0.92206 0.94813 0.95416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.40 10.24 -55.14 -0.56 -4.96 16 3 C 0.05 0.47 4.97 36.00 0.18 0.65 16 4 C 0.52 7.10 7.75 -10.99 -0.09 7.02 16 5 O -0.51 -9.43 16.08 -14.36 -0.23 -9.66 16 6 N -0.60 -6.91 2.36 -182.96 -0.43 -7.35 16 7 C 0.08 0.57 10.24 59.85 0.61 1.18 16 8 C 0.10 1.22 4.44 -5.20 -0.02 1.20 16 9 C 0.50 8.07 7.74 -10.99 -0.09 7.99 16 10 O -0.54 -10.44 15.80 5.56 0.09 -10.35 16 11 N -0.59 -9.91 2.83 -171.84 -0.49 -10.39 16 12 C 0.07 1.01 8.33 59.85 0.50 1.50 16 13 C 0.13 2.36 3.58 -66.09 -0.24 2.13 16 14 H 0.10 1.91 6.99 -51.93 -0.36 1.55 16 15 C -0.15 -2.75 6.54 -24.46 -0.16 -2.91 16 16 C 0.14 3.05 4.50 -2.41 -0.01 3.04 16 17 N -0.60 -14.78 2.84 -169.93 -0.48 -15.27 16 18 C -0.34 -9.32 10.00 -15.06 -0.15 -9.47 16 19 H 0.06 1.74 7.97 -52.48 -0.42 1.32 16 20 C -0.02 -0.64 5.09 -17.43 -0.09 -0.73 16 21 N -0.91 -26.56 13.01 55.49 0.72 -25.84 16 22 Si 1.06 25.00 30.00 -169.99 -5.10 19.90 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.13 2.69 6.24 -3.06 -0.02 2.67 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.65 7.40 -51.93 -0.38 0.27 16 31 H 0.08 0.51 8.11 -51.93 -0.42 0.08 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 34 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.11 0.99 7.33 -51.93 -0.38 0.61 16 36 H 0.11 1.45 7.39 -51.93 -0.38 1.07 16 37 H 0.06 0.85 7.98 -51.93 -0.41 0.43 16 38 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 39 H 0.10 1.94 5.18 -51.93 -0.27 1.67 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.04 0.82 4.17 -51.93 -0.22 0.60 16 43 H 0.05 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.27 7.61 6.18 -40.82 -0.25 7.36 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -36.90 367.69 -6.59 -43.48 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -7.18 Total: -0.69 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 1.54 Total: 15.59 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.68 Total: -58.84 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.71 Total: -24.97 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.90 -6.59 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753435879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.762 kcal (2) G-P(sol) polarization free energy of solvation -36.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds