Wall clock time and date at job start Fri Apr 10 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99877 * 2 1 4 4 C 1.50692 * 109.47130 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00316 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00121 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99768 * 0.02562 * 6 4 3 8 8 C 1.46503 * 120.00394 * 179.97438 * 6 4 3 9 9 C 1.50690 * 109.47441 * 270.00428 * 8 6 4 10 10 O 1.21278 * 119.99939 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00212 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00007 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.08998 * 110.64612 * 1.68341 * 13 11 9 15 15 C 1.55154 * 110.72211 * 125.02165 * 13 11 9 16 16 C 1.55132 * 101.49119 * 82.69543 * 15 13 11 17 17 N 1.47428 * 104.71757 * 37.29367 * 16 15 13 18 18 C 1.36935 * 125.64875 * 155.82175 * 17 16 15 19 19 H 1.08003 * 120.00312 * 199.12526 * 18 17 16 20 20 C 1.38812 * 119.99625 * 19.11600 * 18 17 16 21 21 N 1.31614 * 120.00374 * 28.60150 * 20 18 17 22 22 Si 1.86811 * 119.99834 * 208.32464 * 20 18 17 23 23 H 1.48498 * 109.46900 * 180.27913 * 22 20 18 24 24 H 1.48496 * 109.46817 * 300.27634 * 22 20 18 25 25 H 1.48496 * 109.46967 * 60.27718 * 22 20 18 26 26 C 1.47019 * 108.70668 * 335.55765 * 17 16 15 27 27 H 1.08991 * 109.47350 * 299.99736 * 1 2 3 28 28 H 1.09007 * 109.47018 * 60.00560 * 1 2 3 29 29 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46835 * 59.99547 * 3 2 1 31 31 H 1.08997 * 109.47024 * 300.00029 * 3 2 1 32 32 H 1.09005 * 109.47222 * 269.99710 * 7 6 4 33 33 H 1.09003 * 109.47226 * 29.99981 * 7 6 4 34 34 H 1.08997 * 109.47161 * 149.99855 * 7 6 4 35 35 H 1.08997 * 109.46948 * 149.99658 * 8 6 4 36 36 H 1.09004 * 109.46777 * 30.00558 * 8 6 4 37 37 H 1.08998 * 109.46888 * 269.99986 * 12 11 9 38 38 H 1.08999 * 109.46906 * 30.00340 * 12 11 9 39 39 H 1.09002 * 109.47269 * 150.00400 * 12 11 9 40 40 H 1.09000 * 111.01004 * 200.93782 * 15 13 11 41 41 H 1.09001 * 111.00875 * 324.74688 * 15 13 11 42 42 H 1.09002 * 110.49157 * 278.45940 * 16 15 13 43 43 H 1.08994 * 110.34886 * 156.06124 * 16 15 13 44 44 H 0.97003 * 120.00149 * 5.41435 * 21 20 18 45 45 H 1.08996 * 109.88711 * 120.69684 * 26 17 16 46 46 H 1.09000 * 109.88391 * 241.71885 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2764 2.2969 0.0013 7 6 3.6463 3.6195 0.0019 8 6 5.7368 2.1813 0.0025 9 6 6.2365 2.1416 1.4236 10 8 5.4502 2.2042 2.3448 11 7 7.5572 2.0376 1.6709 12 6 8.5071 1.9626 0.5581 13 6 8.0430 1.9995 3.0525 14 1 7.2096 2.0352 3.7540 15 6 8.9146 0.7387 3.2934 16 6 10.2897 1.2047 2.7470 17 7 10.3870 2.6229 3.1379 18 6 11.5496 3.3277 3.3016 19 1 11.5499 4.2436 3.8739 20 6 12.7279 2.8647 2.7320 21 7 12.6879 2.1413 1.6333 22 14 14.3708 3.2750 3.5208 23 1 15.4678 2.6727 2.7215 24 1 14.5434 4.7492 3.5665 25 1 14.4070 2.7294 4.9014 26 6 9.0290 3.1570 3.3167 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.4901 3.9481 -1.0256 33 1 2.6865 3.5645 0.5156 34 1 4.2934 4.3300 0.5162 35 1 6.1696 3.0399 -0.5111 36 1 6.0292 1.2655 -0.5113 37 1 8.6620 0.9195 0.2823 38 1 8.1092 2.5093 -0.2968 39 1 9.4571 2.4031 0.8609 40 1 8.9728 0.5010 4.3555 41 1 8.5375 -0.1115 2.7250 42 1 10.3220 1.1073 1.6618 43 1 11.0942 0.6290 3.2045 44 1 11.8436 1.9973 1.1778 45 1 8.9059 3.5233 4.3358 46 1 8.8526 3.9662 2.6081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753435879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:12 Heat of formation + Delta-G solvation = -88.852739 kcal Electronic energy + Delta-G solvation = -27226.415076 eV Core-core repulsion = 23345.249200 eV Total energy + Delta-G solvation = -3881.165876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71931 -40.75682 -39.22983 -38.38780 -36.56088 -36.13327 -34.22592 -31.52267 -30.79615 -29.86633 -28.85474 -27.65701 -27.36506 -26.41820 -25.84831 -22.66618 -22.14734 -20.73007 -19.97227 -19.56876 -18.67259 -18.47637 -17.85829 -17.48398 -17.11937 -16.75089 -16.44234 -16.35852 -15.82041 -15.64738 -15.48165 -15.19188 -14.93017 -14.41148 -14.16865 -14.00522 -13.84483 -13.68848 -13.50879 -13.46244 -13.29397 -13.16282 -13.00463 -12.64811 -12.60178 -12.51952 -12.34596 -12.13964 -11.98906 -11.87042 -11.58428 -11.14314 -10.95790 -10.78181 -10.49410 -9.80837 -9.77120 -8.99571 -8.32077 -5.34461 1.30743 1.47023 1.58802 1.62581 1.66082 1.85136 2.02491 2.63386 2.94976 3.18639 3.36934 3.52382 3.53914 3.69630 3.84968 4.01104 4.05836 4.11971 4.17921 4.22056 4.27181 4.30732 4.40842 4.44311 4.49192 4.55404 4.56438 4.70836 4.75993 4.77726 4.85697 4.86620 4.89754 4.95666 5.05905 5.19388 5.22373 5.47792 5.68713 5.97160 6.25572 6.30466 6.34220 6.90547 6.97349 7.05989 7.68867 8.28541 9.00884 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036161 B = 0.002668 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.127922 B =10492.750812 C =10564.692272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.051 3.949 4 C 0.507 3.493 5 O -0.575 6.575 6 N -0.598 5.598 7 C 0.071 3.929 8 C 0.102 3.898 9 C 0.495 3.505 10 O -0.576 6.576 11 N -0.596 5.596 12 C 0.071 3.929 13 C 0.139 3.861 14 H 0.102 0.898 15 C -0.132 4.132 16 C 0.143 3.857 17 N -0.616 5.616 18 C -0.349 4.349 19 H 0.054 0.946 20 C -0.069 4.069 21 N -0.937 5.937 22 Si 1.112 2.888 23 H -0.290 1.290 24 H -0.275 1.275 25 H -0.285 1.285 26 C 0.131 3.869 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.033 0.967 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.310 3.135 -7.483 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.028 4.028 4 C 0.296 3.704 5 O -0.454 6.454 6 N -0.332 5.332 7 C -0.070 4.070 8 C -0.025 4.025 9 C 0.284 3.716 10 O -0.455 6.455 11 N -0.328 5.328 12 C -0.072 4.072 13 C 0.034 3.966 14 H 0.120 0.880 15 C -0.171 4.171 16 C 0.018 3.982 17 N -0.344 5.344 18 C -0.478 4.478 19 H 0.072 0.928 20 C -0.267 4.267 21 N -0.579 5.579 22 Si 0.937 3.063 23 H -0.216 1.216 24 H -0.201 1.201 25 H -0.212 1.212 26 C 0.005 3.995 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -21.659 2.261 -7.093 22.903 hybrid contribution -1.301 0.414 0.386 1.419 sum -22.961 2.675 -6.706 24.069 Atomic orbital electron populations 1.23046 0.78089 1.04200 1.01766 1.87970 1.22371 1.26851 1.95791 1.22387 0.88543 0.86731 1.05134 1.21087 0.90651 0.83613 0.75055 1.90704 1.75710 1.28454 1.50495 1.47534 1.04962 1.07856 1.72820 1.22195 0.99413 0.81284 1.04146 1.21453 0.81530 1.07213 0.92260 1.21774 0.81451 0.75137 0.93264 1.90628 1.55506 1.51796 1.47597 1.47862 1.06327 1.71697 1.06938 1.22117 0.93653 1.02584 0.88809 1.21838 0.95931 0.95109 0.83731 0.88026 1.23082 0.95158 0.96869 1.02007 1.21711 0.94373 0.84928 0.97211 1.44724 1.00955 1.06533 1.82178 1.19895 0.87598 1.09506 1.30766 0.92789 1.27014 1.04479 0.99621 0.95550 1.70903 1.28777 1.43606 1.14654 0.82881 0.72174 0.76371 0.74848 1.21630 1.20101 1.21191 1.21680 0.84998 0.94776 0.98055 0.92478 0.91623 0.88837 0.88104 0.86318 0.88685 0.89260 0.90821 0.83401 0.87077 0.91856 0.88042 0.91699 0.89938 0.90050 0.94799 0.96513 0.92974 0.94951 0.95891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -9.35 10.24 -129.94 -1.33 -10.68 16 3 C 0.05 0.87 4.97 71.23 0.35 1.22 16 4 C 0.51 13.18 7.75 87.65 0.68 13.86 16 5 O -0.58 -21.27 16.08 15.98 0.26 -21.01 16 6 N -0.60 -12.37 2.36 -851.13 -2.01 -14.38 16 7 C 0.07 0.76 10.24 127.77 1.31 2.07 16 8 C 0.10 2.27 4.44 85.63 0.38 2.65 16 9 C 0.50 15.43 7.74 87.66 0.68 16.11 16 10 O -0.58 -21.66 15.80 -3.02 -0.05 -21.70 16 11 N -0.60 -19.35 2.83 -815.97 -2.31 -21.66 16 12 C 0.07 2.09 8.33 127.77 1.06 3.16 16 13 C 0.14 5.10 3.58 46.18 0.17 5.27 16 14 H 0.10 3.79 6.99 -2.39 -0.02 3.78 16 15 C -0.13 -4.94 6.54 32.06 0.21 -4.73 16 16 C 0.14 6.56 4.50 86.93 0.39 6.95 16 17 N -0.62 -30.86 2.84 -691.53 -1.97 -32.82 16 18 C -0.35 -19.58 10.00 84.03 0.84 -18.74 16 19 H 0.05 3.05 7.97 -2.91 -0.02 3.03 16 20 C -0.07 -3.90 5.09 84.86 0.43 -3.47 16 21 N -0.94 -55.47 13.01 21.65 0.28 -55.19 16 22 Si 1.11 50.66 30.00 68.60 2.06 52.72 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 26 C 0.13 5.56 6.24 86.73 0.54 6.10 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.30 7.40 -2.39 -0.02 1.28 16 31 H 0.12 1.03 8.11 -2.39 -0.02 1.01 16 32 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.09 0.68 6.44 -2.39 -0.02 0.66 16 34 H 0.07 0.89 8.07 -2.39 -0.02 0.87 16 35 H 0.15 2.12 7.33 -2.39 -0.02 2.11 16 36 H 0.11 2.64 7.39 -2.38 -0.02 2.63 16 37 H 0.06 1.80 7.98 -2.39 -0.02 1.78 16 38 H 0.10 2.15 6.44 -2.39 -0.02 2.13 16 39 H 0.06 2.47 5.18 -2.39 -0.01 2.46 16 40 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.03 1.59 4.17 -2.39 -0.01 1.58 16 43 H 0.02 0.85 8.07 -2.39 -0.02 0.84 16 44 H 0.26 15.22 6.18 -92.71 -0.57 14.65 16 45 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.02 1.00 8.05 -2.39 -0.02 0.98 16 Total: -1.00 -83.25 367.69 4.40 -78.85 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.17 Total: 13.89 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 8.29 Total: 31.98 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -6.00 Total: -124.05 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -1.12 Total: -53.39 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.06 Total: 52.72 kcal Total: -83.25 4.40 -78.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753435879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.006 kcal (2) G-P(sol) polarization free energy of solvation -83.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds