Wall clock time and date at job start Fri Apr 10 2020 18:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47045 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47426 * 119.99572 * 10 8 6 13 13 H 1.48501 * 109.46833 * 239.99815 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 O 1.42908 * 109.47066 * 179.97438 * 18 16 15 20 20 C 1.42897 * 113.99981 * 180.02562 * 19 18 16 21 21 C 1.53120 * 109.51961 * 269.68239 * 20 19 18 22 22 C 1.53039 * 109.27708 * 182.44073 * 21 20 19 23 23 N 1.46850 * 109.52493 * 59.17856 * 22 21 20 24 24 C 1.46897 * 111.00287 * 174.16025 * 23 22 21 25 25 C 1.46843 * 111.19887 * 298.26133 * 23 22 21 26 26 C 1.53038 * 109.52525 * 61.73779 * 25 23 22 27 27 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 29 29 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 30 30 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 31 31 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 35 35 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 36 36 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 37 37 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 38 38 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 39 39 H 1.09002 * 109.52445 * 29.87295 * 20 19 18 40 40 H 1.08997 * 109.50627 * 302.38092 * 21 20 19 41 41 H 1.09001 * 109.50809 * 62.50441 * 21 20 19 42 42 H 1.09006 * 109.46356 * 299.16736 * 22 21 20 43 43 H 1.08999 * 109.46653 * 179.19827 * 22 21 20 44 44 H 1.09002 * 109.46854 * 184.21485 * 24 23 22 45 45 H 1.08995 * 109.46945 * 304.20928 * 24 23 22 46 46 H 1.09000 * 109.46882 * 64.21170 * 24 23 22 47 47 H 1.08999 * 109.46323 * 301.72117 * 25 23 22 48 48 H 1.09001 * 109.45739 * 181.74459 * 25 23 22 49 49 H 1.09003 * 109.50637 * 180.87985 * 26 25 23 50 50 H 1.09004 * 109.53747 * 60.78381 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 2.8694 -1.5951 -6.3785 12 1 0.8768 -0.5749 -7.3112 13 1 2.9444 0.6868 -7.1952 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 8 2.0724 -0.3092 6.0602 20 6 1.7457 0.3494 7.2855 21 6 2.8662 1.3248 7.6566 22 6 2.5398 1.9819 8.9997 23 7 2.4055 0.9468 10.0327 24 6 2.2292 1.5486 11.3611 25 6 1.3047 0.0261 9.7217 26 6 1.5941 -0.6894 8.4002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -1.7198 -1.2951 31 1 3.1263 -0.7995 -1.2055 32 1 1.1488 0.8594 -2.3517 33 1 0.6804 1.9069 -5.4839 34 1 1.6053 -1.7197 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1487 0.8594 2.3518 37 1 2.0324 1.3633 4.8474 38 1 0.5109 0.4440 4.9368 39 1 0.8101 0.8959 7.1672 40 1 3.8088 0.7832 7.7360 41 1 2.9505 2.0922 6.8871 42 1 1.6041 2.5347 8.9157 43 1 3.3426 2.6665 9.2737 44 1 2.2072 0.7625 12.1160 45 1 3.0581 2.2259 11.5660 46 1 1.2914 2.1036 11.3870 47 1 0.3748 0.5880 9.6343 48 1 1.2105 -0.7101 10.5201 49 1 0.7696 -1.3613 8.1618 50 1 2.5165 -1.2633 8.4908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753636036.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:14 Heat of formation + Delta-G solvation = -103.224457 kcal Electronic energy + Delta-G solvation = -25633.087284 eV Core-core repulsion = 21887.131298 eV Total energy + Delta-G solvation = -3745.955985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98766 -40.18061 -38.41975 -37.84238 -35.95725 -34.15083 -33.49588 -31.98172 -31.88712 -29.50917 -27.66303 -27.14118 -26.38081 -24.30065 -24.10176 -23.41218 -21.77498 -21.27523 -20.82458 -19.23258 -18.26236 -17.92298 -17.17210 -17.05005 -16.69668 -16.25851 -16.21335 -16.03168 -15.64124 -15.47797 -15.28492 -15.23549 -14.73976 -14.36621 -14.17374 -13.94760 -13.88509 -13.56526 -13.52286 -13.39972 -13.03108 -12.95724 -12.83023 -12.57403 -12.18839 -12.18089 -12.12745 -12.11102 -11.99567 -11.88648 -11.70110 -11.65656 -11.47369 -10.95560 -10.86595 -10.51325 -10.11676 -9.29162 -8.99147 -7.95833 -5.23801 1.48127 1.48204 1.57953 1.58559 1.79850 2.56074 2.91840 3.00328 3.38201 3.68895 3.73261 3.79414 3.85067 3.96658 4.08212 4.10299 4.12558 4.22515 4.28629 4.33632 4.35521 4.36860 4.54758 4.55312 4.56971 4.67594 4.71041 4.73303 4.78760 4.86770 4.94418 4.94716 5.01331 5.04564 5.05639 5.13424 5.20224 5.28064 5.32588 5.40489 5.49202 5.50758 6.10779 6.11185 6.14159 6.27256 6.56479 7.23269 7.34252 8.09196 8.33898 9.27721 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.047358 B = 0.001652 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.104639 B =16944.840634 C =17104.840780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.710 5.710 16 C 0.507 3.493 17 O -0.578 6.578 18 C 0.047 3.953 19 O -0.388 6.388 20 C 0.086 3.914 21 C -0.138 4.138 22 C 0.061 3.939 23 N -0.565 5.565 24 C 0.026 3.974 25 C 0.063 3.937 26 C -0.114 4.114 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.377 0.623 33 H 0.252 0.748 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.417 0.583 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.032 0.968 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 3.971 33.266 33.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.015 3.985 15 N -0.364 5.364 16 C 0.294 3.706 17 O -0.457 6.457 18 C -0.032 4.032 19 O -0.307 6.307 20 C 0.029 3.971 21 C -0.176 4.176 22 C -0.067 4.067 23 N -0.291 5.291 24 C -0.122 4.122 25 C -0.065 4.065 26 C -0.152 4.152 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.210 0.790 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.505 2.658 33.249 33.389 hybrid contribution -0.826 0.903 -1.389 1.851 sum -2.331 3.562 31.860 32.143 Atomic orbital electron populations 1.21734 0.93740 1.01925 1.01918 1.21327 0.97253 1.00114 0.92512 0.90029 1.20734 0.96522 0.94163 0.85772 1.42494 1.66816 1.27787 1.01278 1.19673 1.27752 1.05399 0.85111 0.90928 1.25513 1.01607 0.97947 1.01405 1.69802 1.44816 1.18119 1.29017 0.85097 0.77107 0.77601 0.80101 1.19326 1.21933 1.21945 1.21118 0.99465 0.95042 0.82923 1.45761 1.57716 1.28308 1.04633 1.20936 0.78870 0.85415 0.85357 1.90721 1.41253 1.26489 1.87191 1.22368 1.01544 0.95930 0.83386 1.88044 1.78936 1.50098 1.13582 1.22362 0.97685 0.93737 0.83348 1.22087 0.99360 0.98933 0.97224 1.22047 1.01197 0.92953 0.90509 1.61919 1.44656 1.19213 1.03288 1.22375 1.00703 0.99605 0.89528 1.22039 0.91814 0.95825 0.96775 1.21641 1.02780 0.97790 0.93004 0.93109 0.90224 0.93845 0.96185 0.96332 0.79015 0.93957 0.91976 0.92340 0.74496 0.87506 0.87127 0.90113 0.92210 0.90053 0.93703 0.89754 0.90822 0.90840 0.94986 0.93670 0.89441 0.90368 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.94 71.98 0.64 -3.05 16 2 C -0.09 -2.70 2.46 -10.80 -0.03 -2.73 16 3 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 4 C 0.16 6.11 5.65 86.38 0.49 6.60 16 5 N -0.74 -37.08 5.33 -343.46 -1.83 -38.91 16 6 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 9 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 10 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 C 0.14 3.67 5.06 86.38 0.44 4.11 16 15 N -0.71 -14.55 5.28 -463.07 -2.45 -16.99 16 16 C 0.51 12.35 7.91 87.66 0.69 13.04 16 17 O -0.58 -20.61 16.50 15.99 0.26 -20.34 16 18 C 0.05 0.74 6.23 71.24 0.44 1.18 16 19 O -0.39 -8.36 9.53 -129.94 -1.24 -9.60 16 20 C 0.09 1.26 2.68 30.67 0.08 1.34 16 21 C -0.14 -1.86 5.72 30.65 0.18 -1.69 16 22 C 0.06 0.66 5.46 86.33 0.47 1.13 16 23 N -0.57 -7.02 4.91 -922.59 -4.53 -11.55 16 24 C 0.03 0.22 9.59 127.69 1.22 1.44 16 25 C 0.06 0.71 5.46 86.33 0.47 1.18 16 26 C -0.11 -1.69 5.75 30.65 0.18 -1.51 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.55 7.18 -2.39 -0.02 1.54 16 29 H 0.04 1.43 7.18 -2.38 -0.02 1.42 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.38 19.67 6.85 -92.70 -0.64 19.04 16 33 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.42 5.70 7.66 -92.71 -0.71 4.99 16 37 H 0.11 1.07 7.96 -2.39 -0.02 1.05 16 38 H 0.11 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 0.88 7.96 -2.39 -0.02 0.86 16 42 H 0.04 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.08 0.81 8.09 -2.39 -0.02 0.80 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 46 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.09 0.85 8.12 -2.39 -0.02 0.83 16 49 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -75.20 398.84 -1.32 -76.52 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.44 Total: 26.50 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 6.59 Total: 4.32 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -8.52 Total: -125.59 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.97 Total: -29.94 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.20 -1.32 -76.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753636036.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.705 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds