Wall clock time and date at job start Fri Apr 10 2020 18:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00332 * 2 1 4 4 C 1.50697 * 109.47483 * 179.97438 * 3 2 1 5 5 O 1.21276 * 119.99901 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99981 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00331 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.05554 * 326.41880 * 7 6 4 9 9 C 1.54088 * 110.00765 * 87.97604 * 7 6 4 10 10 C 1.54263 * 106.62346 * 119.38477 * 9 7 6 11 11 C 1.54896 * 104.19490 * 336.28121 * 10 9 7 12 12 C 1.54261 * 110.03593 * 205.00360 * 7 6 4 13 13 H 1.08997 * 110.48869 * 145.51507 * 12 7 6 14 14 C 1.52998 * 110.48889 * 22.99940 * 12 7 6 15 15 N 1.46896 * 109.47624 * 176.84201 * 14 12 7 16 16 C 1.46899 * 111.00338 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.46987 * 179.97438 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31413 * 119.99930 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99702 * 24 22 20 26 26 H 1.48498 * 109.47011 * 209.99970 * 24 22 20 27 27 H 1.48494 * 109.47201 * 329.99943 * 24 22 20 28 28 H 1.08997 * 109.47417 * 60.00580 * 1 2 3 29 29 H 1.09010 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47455 * 299.99492 * 1 2 3 31 31 H 1.09000 * 109.46604 * 59.99619 * 3 2 1 32 32 H 1.09000 * 109.46946 * 300.00575 * 3 2 1 33 33 H 0.97002 * 119.99902 * 359.97438 * 6 4 3 34 34 H 1.08996 * 110.11294 * 0.04099 * 9 7 6 35 35 H 1.09006 * 109.96907 * 238.64981 * 9 7 6 36 36 H 1.08996 * 110.48894 * 217.60445 * 10 9 7 37 37 H 1.09006 * 110.48537 * 94.95432 * 10 9 7 38 38 H 1.08999 * 110.75591 * 279.62735 * 11 10 9 39 39 H 1.09002 * 110.91362 * 156.32761 * 11 10 9 40 40 H 1.09004 * 109.46677 * 56.84365 * 14 12 7 41 41 H 1.09004 * 109.46850 * 296.84664 * 14 12 7 42 42 H 1.00900 * 110.99693 * 56.04421 * 15 14 12 43 43 H 1.09003 * 109.46477 * 60.00383 * 16 15 14 44 44 H 1.08993 * 109.47002 * 300.00709 * 16 15 14 45 45 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 46 46 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 0.0002 7 6 5.7368 2.1812 0.0003 8 1 6.0422 1.3016 0.5669 9 6 6.2584 2.0881 -1.4467 10 6 7.1894 3.2997 -1.6590 11 6 6.7105 4.3349 -0.6111 12 6 6.3673 3.4491 0.6124 13 1 7.2715 3.1963 1.1660 14 6 5.3643 4.1597 1.5233 15 7 6.0101 5.3194 2.1523 16 6 5.0745 6.0282 3.0357 17 6 5.7714 7.2086 3.6620 18 8 6.9329 7.4372 3.3980 19 7 5.1035 8.0107 4.5146 20 6 5.7390 9.0813 5.0887 21 1 6.7735 9.2845 4.8542 22 6 5.0522 9.9050 5.9722 23 7 5.6615 10.9309 6.5228 24 14 3.2631 9.5532 6.3782 25 1 3.1909 8.6491 7.5541 26 1 2.5664 10.8271 6.6897 27 1 2.6097 8.9036 5.2137 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8593 3.1725 -0.0009 34 1 5.4256 2.1296 -2.1486 35 1 6.8152 1.1609 -1.5827 36 1 7.0747 3.6968 -2.6676 37 1 8.2267 3.0208 -1.4734 38 1 5.8256 4.8630 -0.9661 39 1 7.5066 5.0385 -0.3673 40 1 5.0234 3.4703 2.2958 41 1 4.5113 4.4946 0.9330 42 1 6.3920 5.9422 1.4564 43 1 4.7313 5.3520 3.8187 44 1 4.2199 6.3760 2.4556 45 1 4.1744 7.8281 4.7254 46 1 5.1819 11.5061 7.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753878019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:29 Heat of formation + Delta-G solvation = -114.487318 kcal Electronic energy + Delta-G solvation = -26011.826637 eV Core-core repulsion = 22129.549163 eV Total energy + Delta-G solvation = -3882.277474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54093 -38.90278 -38.36161 -37.50072 -35.25671 -33.91840 -33.86642 -31.70332 -30.31913 -29.74353 -27.70401 -26.81608 -25.99160 -24.37853 -23.03782 -21.37988 -20.74714 -19.78684 -19.37135 -18.38831 -17.88209 -17.03824 -16.66342 -16.41475 -15.89140 -15.63725 -15.50312 -15.06771 -14.89174 -14.85592 -14.33488 -14.06178 -13.93832 -13.45590 -13.33923 -13.10224 -12.91083 -12.73973 -12.35025 -12.19580 -11.98545 -11.87796 -11.76002 -11.36851 -11.31360 -11.18751 -11.00249 -10.82960 -10.74453 -10.62815 -10.24491 -10.05057 -10.00433 -9.60453 -9.35409 -8.63471 -8.23539 -8.18549 -6.33844 -3.85441 2.31664 2.48853 2.98714 3.04102 3.12256 3.66109 3.70290 3.93277 4.07308 4.30445 4.33092 4.42699 4.62490 4.65966 4.71327 4.82568 4.89032 4.93772 5.05364 5.11227 5.19321 5.22662 5.24558 5.26131 5.29199 5.38854 5.48189 5.56808 5.66975 5.74289 5.76692 5.86053 5.88218 5.90561 6.02156 6.14756 6.26720 6.53798 7.02590 7.17242 7.51864 7.55423 7.92952 8.11548 8.56683 8.92077 9.39349 9.79315 10.79279 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.002741 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.474373 B =10211.129894 C =12078.782940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.041 3.959 4 C 0.513 3.487 5 O -0.519 6.519 6 N -0.723 5.723 7 C 0.148 3.852 8 H 0.094 0.906 9 C -0.133 4.133 10 C -0.123 4.123 11 C -0.125 4.125 12 C -0.097 4.097 13 H 0.101 0.899 14 C 0.069 3.931 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.351 0.649 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 -17.788 -16.303 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.039 4.039 4 C 0.298 3.702 5 O -0.393 6.393 6 N -0.378 5.378 7 C 0.043 3.957 8 H 0.112 0.888 9 C -0.172 4.172 10 C -0.160 4.160 11 C -0.162 4.162 12 C -0.116 4.116 13 H 0.119 0.881 14 C -0.061 4.061 15 N -0.299 5.299 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.171 0.829 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.672 -18.786 -15.817 26.044 hybrid contribution -2.586 1.071 -0.150 2.803 sum -11.259 -17.715 -15.966 26.372 Atomic orbital electron populations 1.22853 0.80258 1.03400 1.00217 1.88016 1.19872 1.25117 1.95435 1.22262 0.91795 0.87130 1.02713 1.20254 0.88628 0.84744 0.76571 1.90735 1.74562 1.26485 1.47563 1.46163 1.07066 1.08678 1.75894 1.21692 0.78374 0.99127 0.96464 0.88795 1.22620 0.99543 0.98979 0.96013 1.22340 0.99434 0.95180 0.99096 1.22632 1.01545 0.97580 0.94490 1.22323 0.99675 0.93755 0.95870 0.88052 1.21937 0.94436 0.93467 0.96247 1.60044 1.34615 1.10886 1.24388 1.21714 0.93814 0.95785 0.97227 1.19698 0.87921 0.85091 0.83800 1.90569 1.16774 1.73426 1.63818 1.42210 1.12323 1.26830 1.41630 1.19435 0.99535 1.02232 1.22209 0.86269 1.25046 0.98435 0.95901 0.96804 1.69622 1.36983 1.15717 1.29754 0.86662 0.84744 0.78807 0.79090 1.19581 1.20184 1.19590 0.93794 0.89029 0.93663 0.90107 0.90280 0.76289 0.91418 0.91095 0.91594 0.91205 0.91706 0.90352 0.90779 0.95908 0.82875 0.89490 0.93869 0.79714 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.72 10.24 -55.14 -0.56 -4.29 16 3 C 0.04 0.31 6.42 36.00 0.23 0.54 16 4 C 0.51 5.30 7.90 -10.99 -0.09 5.21 16 5 O -0.52 -7.77 16.15 -14.35 -0.23 -8.00 16 6 N -0.72 -5.80 4.34 -52.62 -0.23 -6.03 16 7 C 0.15 1.33 3.13 -66.71 -0.21 1.12 16 8 H 0.09 1.01 7.57 -51.93 -0.39 0.61 16 9 C -0.13 -1.10 6.59 -25.50 -0.17 -1.27 16 10 C -0.12 -0.93 6.83 -25.07 -0.17 -1.11 16 11 C -0.12 -1.05 5.62 -24.73 -0.14 -1.19 16 12 C -0.10 -0.88 3.05 -88.96 -0.27 -1.16 16 13 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 14 C 0.07 0.70 4.28 -3.83 -0.02 0.68 16 15 N -0.67 -9.49 6.13 -115.06 -0.70 -10.19 16 16 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 17 C 0.45 9.93 7.82 -10.99 -0.09 9.84 16 18 O -0.56 -14.87 15.78 5.55 0.09 -14.79 16 19 N -0.59 -13.78 5.09 -10.96 -0.06 -13.83 16 20 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 24 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 2.37 6.52 -40.82 -0.27 2.10 16 34 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.51 8.00 -51.93 -0.42 0.09 16 39 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.02 0.19 6.34 -51.93 -0.33 -0.14 16 42 H 0.35 5.17 7.61 -39.29 -0.30 4.87 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -35.71 375.78 -7.45 -43.16 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.39 Total: 11.72 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.08 Total: 7.00 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.21 Total: -54.79 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.71 Total: -27.07 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.71 -7.45 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753878019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.323 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds