Wall clock time and date at job start Fri Apr 10 2020 18:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47400 * 2 1 4 4 N 1.46898 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.46852 * 110.99774 * 66.04770 * 4 3 2 6 6 C 1.53034 * 109.52302 * 185.84044 * 5 4 3 7 7 C 1.53122 * 109.27636 * 300.82004 * 6 5 4 8 8 C 1.53116 * 109.16460 * 57.65134 * 7 6 5 9 9 H 1.09003 * 109.49887 * 62.32714 * 8 7 6 10 10 C 1.50696 * 109.50857 * 182.40562 * 8 7 6 11 11 O 1.21280 * 120.00048 * 119.99611 * 10 8 7 12 12 N 1.34784 * 120.00018 * 300.00541 * 10 8 7 13 13 C 1.46493 * 119.99872 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46873 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47032 * 60.00021 * 14 13 12 16 16 O 1.42900 * 109.47316 * 299.99706 * 14 13 12 17 17 C 1.52998 * 109.47091 * 179.97438 * 14 13 12 18 18 N 1.46506 * 109.47233 * 185.00154 * 17 14 13 19 19 C 1.36931 * 119.99939 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00644 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99715 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00107 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99746 * 179.72150 * 21 19 18 24 24 H 1.48497 * 109.47323 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46790 * 120.00304 * 23 21 19 26 26 H 1.48501 * 109.47364 * 240.00332 * 23 21 19 27 27 C 1.46844 * 110.99835 * 190.25345 * 4 3 2 28 28 H 1.09005 * 109.46613 * 300.00205 * 1 2 3 29 29 H 1.08999 * 109.47165 * 59.99937 * 1 2 3 30 30 H 1.08996 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46748 * 239.99447 * 2 1 3 32 32 H 1.09008 * 109.46999 * 119.99860 * 2 1 3 33 33 H 1.08995 * 109.46972 * 59.99619 * 3 2 1 34 34 H 1.08996 * 109.46547 * 299.99974 * 3 2 1 35 35 H 1.08997 * 109.46702 * 65.82297 * 5 4 3 36 36 H 1.09004 * 109.45163 * 305.84741 * 5 4 3 37 37 H 1.08994 * 109.50900 * 180.87901 * 6 5 4 38 38 H 1.09002 * 109.50733 * 60.75720 * 6 5 4 39 39 H 1.09004 * 109.52001 * 297.74872 * 7 6 5 40 40 H 1.09001 * 109.57570 * 177.59100 * 7 6 5 41 41 H 0.97001 * 119.99997 * 359.97438 * 12 10 8 42 42 H 1.08999 * 109.47274 * 60.00030 * 13 12 10 43 43 H 1.08997 * 109.47066 * 299.99265 * 13 12 10 44 44 H 0.96701 * 113.99949 * 300.00844 * 16 14 13 45 45 H 1.09001 * 109.47671 * 65.00080 * 17 14 13 46 46 H 1.09006 * 109.47297 * 304.99799 * 17 14 13 47 47 H 0.97000 * 119.99307 * 359.97438 * 18 17 14 48 48 H 0.97000 * 120.00330 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.46388 * 54.14799 * 27 4 3 50 50 H 1.09000 * 109.46724 * 294.17587 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0358 0.8856 -1.2520 6 6 5.5586 0.7663 -1.1582 7 6 6.1592 2.1511 -0.9010 8 6 5.5581 2.7291 0.3831 9 1 5.8215 2.0918 1.2272 10 6 6.0996 4.1167 0.6121 11 8 5.3422 5.0624 0.6634 12 7 7.4258 4.3066 0.7597 13 6 7.9523 5.6555 0.9818 14 6 9.4752 5.5929 1.1159 15 1 9.9038 5.1814 0.2021 16 8 9.8220 4.7581 2.2227 17 6 10.0251 7.0017 1.3472 18 7 11.4895 6.9589 1.3565 19 6 12.2069 8.1095 1.5478 20 1 11.6933 9.0486 1.6914 21 6 13.5944 8.0688 1.5571 22 7 14.2204 6.9245 1.3816 23 14 14.5732 9.6397 1.8103 24 1 13.6401 10.7829 1.9768 25 1 15.4153 9.5075 3.0264 26 1 15.4422 9.8772 0.6298 27 6 4.0352 2.7914 0.2447 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9562 -0.8900 35 1 3.7734 1.5434 -2.0806 36 1 3.6039 -0.1009 -1.4206 37 1 5.9508 0.3676 -2.0938 38 1 5.8215 0.0977 -0.3385 39 1 5.9295 2.8092 -1.7391 40 1 7.2403 2.0656 -0.7908 41 1 8.0316 3.5501 0.7189 42 1 7.5240 6.0668 1.8958 43 1 7.6875 6.2924 0.1378 44 1 9.4731 5.0644 3.0709 45 1 9.6666 7.3791 2.3049 46 1 9.6860 7.6601 0.5473 47 1 11.9508 6.1155 1.2271 48 1 15.1900 6.8961 1.3878 49 1 3.6031 3.1892 1.1629 50 1 3.7729 3.4403 -0.5909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753924907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:33 Heat of formation + Delta-G solvation = -120.251048 kcal Electronic energy + Delta-G solvation = -26140.881929 eV Core-core repulsion = 22394.187615 eV Total energy + Delta-G solvation = -3746.694314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36333 -39.67830 -38.81661 -36.10000 -35.94583 -35.27438 -33.24335 -32.87766 -32.14832 -30.47452 -27.43144 -27.05200 -25.32177 -24.25919 -23.78368 -22.77075 -22.23535 -21.24955 -20.61974 -19.25166 -18.44011 -17.69694 -17.23592 -16.93302 -16.45057 -16.37422 -16.29520 -15.98192 -15.46242 -15.45679 -15.15763 -14.94569 -14.87091 -14.50116 -14.34562 -14.12895 -13.85076 -13.67614 -13.54284 -13.20074 -12.96566 -12.82782 -12.78928 -12.59663 -12.45984 -12.12667 -12.07409 -11.97324 -11.94806 -11.81809 -11.62158 -11.43337 -11.30491 -11.10340 -10.99196 -10.67986 -10.14412 -9.34316 -9.01909 -7.95852 -5.25272 1.47645 1.48197 1.58214 1.58378 2.04323 2.55361 2.91658 3.35706 3.47854 3.58424 3.59170 3.73200 3.85397 4.00812 4.01581 4.12729 4.18282 4.21391 4.24741 4.35884 4.41485 4.46722 4.55234 4.60611 4.61417 4.67312 4.70626 4.76313 4.80174 4.88544 4.92831 4.95969 4.96897 5.09225 5.15347 5.20718 5.24194 5.30654 5.35402 5.39035 5.44026 5.48012 6.05170 6.12540 6.25467 6.50475 6.79263 7.19449 7.32733 8.07644 8.31015 9.27495 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.042695 B = 0.001892 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.662793 B =14795.113755 C =15134.040759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.054 3.946 4 N -0.541 5.541 5 C 0.047 3.953 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.094 4.094 9 H 0.120 0.880 10 C 0.517 3.483 11 O -0.586 6.586 12 N -0.709 5.709 13 C 0.102 3.898 14 C 0.110 3.890 15 H 0.101 0.899 16 O -0.562 6.562 17 C 0.122 3.878 18 N -0.739 5.739 19 C -0.249 4.249 20 H 0.076 0.924 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.083 3.917 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.415 0.585 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.377 0.623 48 H 0.251 0.749 49 H 0.069 0.931 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.674 -17.083 -4.541 31.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.265 5.265 5 C -0.080 4.080 6 C -0.148 4.148 7 C -0.149 4.149 8 C -0.115 4.115 9 H 0.138 0.862 10 C 0.304 3.696 11 O -0.467 6.467 12 N -0.361 5.361 13 C -0.024 4.024 14 C 0.050 3.950 15 H 0.119 0.881 16 O -0.368 6.368 17 C -0.006 4.006 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.094 0.906 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.046 4.046 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.252 0.748 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.234 0.766 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.209 0.791 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -25.742 -16.849 -4.560 31.102 hybrid contribution 0.657 1.455 -0.134 1.603 sum -25.085 -15.394 -4.693 29.804 Atomic orbital electron populations 1.21731 0.94936 1.02299 1.01852 1.21493 0.95907 0.95139 1.02679 1.22188 0.86298 0.98265 1.00641 1.61950 1.07990 1.21043 1.35526 1.22275 0.96181 1.00313 0.89268 1.21572 0.93710 0.96013 1.03479 1.21606 1.01072 0.97425 0.94811 1.21271 0.95894 0.92231 1.02112 0.86246 1.21048 0.81955 0.91612 0.74983 1.90685 1.58402 1.45056 1.52534 1.45813 1.07411 1.10256 1.72587 1.21830 0.93307 0.84730 1.02485 1.22073 0.91744 0.90476 0.90748 0.88117 1.86555 1.79209 1.52362 1.18699 1.21416 0.84489 0.95725 0.98930 1.42411 1.00976 1.07520 1.87304 1.19685 0.89448 0.88793 1.40191 0.90605 1.25582 0.97635 0.99974 1.03459 1.69832 1.07637 1.25843 1.58434 0.85067 0.78543 0.79317 0.76764 1.19070 1.21984 1.21972 1.21657 0.93237 0.89071 1.00619 0.92678 0.92822 0.91728 0.91527 0.91406 0.91093 0.95264 0.95595 0.89020 0.89469 0.90169 0.92628 0.89656 0.74779 0.91023 0.90884 0.76605 0.95186 0.94959 0.79111 0.93969 0.91255 0.95893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.11 -1.24 5.87 30.60 0.18 -1.06 16 3 C 0.05 0.76 4.96 86.30 0.43 1.19 16 4 N -0.54 -8.52 4.66 -896.38 -4.17 -12.69 16 5 C 0.05 0.61 5.29 86.32 0.46 1.07 16 6 C -0.11 -1.23 6.09 30.65 0.19 -1.05 16 7 C -0.11 -1.56 5.16 30.67 0.16 -1.40 16 8 C -0.09 -1.64 2.69 -11.49 -0.03 -1.67 16 9 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 10 C 0.52 12.26 7.16 87.65 0.63 12.89 16 11 O -0.59 -18.75 15.98 -3.03 -0.05 -18.80 16 12 N -0.71 -15.17 5.35 -463.07 -2.48 -17.65 16 13 C 0.10 2.51 5.34 86.38 0.46 2.98 16 14 C 0.11 3.18 3.08 30.59 0.09 3.28 16 15 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 16 O -0.56 -16.56 13.03 -148.98 -1.94 -18.50 16 17 C 0.12 4.58 5.90 86.38 0.51 5.09 16 18 N -0.74 -37.10 5.55 -343.44 -1.91 -39.01 16 19 C -0.25 -13.91 9.99 84.04 0.84 -13.07 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 23 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 C 0.08 1.61 4.03 86.33 0.35 1.96 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.66 6.44 -2.39 -0.02 0.64 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 1.05 7.98 -2.39 -0.02 1.03 16 34 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 35 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.96 6.22 -2.39 -0.01 0.94 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.08 1.01 7.64 -2.39 -0.02 0.99 16 41 H 0.42 7.44 7.82 -92.71 -0.72 6.71 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.39 9.29 9.05 -74.06 -0.67 8.62 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.38 20.43 7.67 -92.71 -0.71 19.72 16 48 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 49 H 0.07 1.50 7.99 -2.39 -0.02 1.48 16 50 H 0.02 0.52 8.08 -2.39 -0.02 0.51 16 Total: -1.00 -70.18 396.61 -3.97 -74.15 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -1.18 Total: 37.71 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.44 Total: 5.75 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -8.27 Total: -128.43 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.99 Total: -37.30 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -70.18 -3.97 -74.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753924907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.097 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds