Wall clock time and date at job start Fri Apr 10 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 N 1.46899 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.46846 * 110.99844 * 66.04501 * 4 3 2 6 6 C 1.53040 * 109.52699 * 185.84110 * 5 4 3 7 7 C 1.53118 * 109.27746 * 300.82286 * 6 5 4 8 8 C 1.53121 * 109.16182 * 57.64952 * 7 6 5 9 9 H 1.09001 * 109.50455 * 62.32775 * 8 7 6 10 10 C 1.50699 * 109.50318 * 182.40587 * 8 7 6 11 11 O 1.21280 * 119.99807 * 119.99762 * 10 8 7 12 12 N 1.34776 * 120.00185 * 300.00161 * 10 8 7 13 13 C 1.46496 * 120.00053 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47103 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.46939 * 305.00302 * 14 13 12 16 16 O 1.42907 * 109.46997 * 64.99907 * 14 13 12 17 17 C 1.52996 * 109.47301 * 184.99639 * 14 13 12 18 18 N 1.46498 * 109.47059 * 179.97438 * 17 14 13 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 C 1.46842 * 111.00165 * 190.25184 * 4 3 2 28 28 H 1.09001 * 109.47133 * 300.00047 * 1 2 3 29 29 H 1.08999 * 109.47181 * 60.00403 * 1 2 3 30 30 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47133 * 239.99953 * 2 1 3 32 32 H 1.08996 * 109.46735 * 119.99861 * 2 1 3 33 33 H 1.08993 * 109.47523 * 59.99770 * 3 2 1 34 34 H 1.09003 * 109.47154 * 300.00182 * 3 2 1 35 35 H 1.08997 * 109.46737 * 65.82050 * 5 4 3 36 36 H 1.09009 * 109.45411 * 305.85318 * 5 4 3 37 37 H 1.09001 * 109.50393 * 180.87651 * 6 5 4 38 38 H 1.09008 * 109.50042 * 60.75944 * 6 5 4 39 39 H 1.08998 * 109.52015 * 297.74758 * 7 6 5 40 40 H 1.08995 * 109.57634 * 177.58529 * 7 6 5 41 41 H 0.97003 * 119.99535 * 359.97438 * 12 10 8 42 42 H 1.08992 * 109.47604 * 59.99655 * 13 12 10 43 43 H 1.09003 * 109.46647 * 299.99312 * 13 12 10 44 44 H 0.96694 * 114.00447 * 59.99736 * 16 14 13 45 45 H 1.09004 * 109.47066 * 60.00027 * 17 14 13 46 46 H 1.08994 * 109.46974 * 300.00175 * 17 14 13 47 47 H 0.97001 * 120.00384 * 0.02562 * 18 17 14 48 48 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.46131 * 54.14888 * 27 4 3 50 50 H 1.08997 * 109.46785 * 294.17689 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0357 0.8858 -1.2519 6 6 5.5586 0.7666 -1.1582 7 6 6.1592 2.1515 -0.9010 8 6 5.5579 2.7294 0.3832 9 1 5.8214 2.0921 1.2273 10 6 6.0994 4.1170 0.6121 11 8 5.3419 5.0627 0.6634 12 7 7.4255 4.3070 0.7597 13 6 7.9519 5.6558 0.9829 14 6 9.4747 5.5934 1.1168 15 1 9.7416 4.8871 1.9029 16 8 10.0447 5.1652 -0.1218 17 6 10.0127 6.9806 1.4732 18 7 11.4708 6.9205 1.6020 19 6 12.1778 8.0514 1.9128 20 1 11.6600 8.9866 2.0673 21 6 13.5599 7.9958 2.0292 22 7 14.2393 9.0826 2.3284 23 14 14.4554 6.3786 1.7612 24 1 14.8195 6.2459 0.3277 25 1 15.6878 6.3520 2.5894 26 1 13.5711 5.2520 2.1537 27 6 4.0350 2.7916 0.2446 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.7732 1.5435 -2.0805 36 1 3.6039 -0.1008 -1.4206 37 1 5.9507 0.3679 -2.0938 38 1 5.8215 0.0980 -0.3384 39 1 5.9293 2.8095 -1.7390 40 1 7.2401 2.0660 -0.7907 41 1 8.0314 3.5505 0.7190 42 1 7.5236 6.0664 1.8972 43 1 7.6868 6.2933 0.1393 44 1 9.8475 5.7479 -0.8678 45 1 9.5780 7.3072 2.4179 46 1 9.7458 7.6867 0.6870 47 1 11.9359 6.0808 1.4629 48 1 15.2052 9.0437 2.4101 49 1 3.6029 3.1894 1.1628 50 1 3.7726 3.4405 -0.5909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753924908.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:36 Heat of formation + Delta-G solvation = -90.229147 kcal Electronic energy + Delta-G solvation = -26235.810693 eV Core-core repulsion = 22490.418226 eV Total energy + Delta-G solvation = -3745.392467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51804 -38.88644 -37.72840 -35.35843 -34.54131 -34.14154 -32.37629 -31.59746 -31.36626 -29.40828 -26.74426 -25.91975 -24.28578 -23.32658 -22.28477 -21.64611 -21.43800 -20.54931 -19.85684 -17.79126 -17.56598 -16.50831 -16.27693 -16.12468 -15.81880 -15.18988 -15.18584 -14.82759 -14.57976 -14.46878 -14.33618 -13.83272 -13.71591 -13.61252 -13.24569 -13.20923 -12.97220 -12.59787 -12.39112 -12.30616 -12.08404 -12.02304 -11.83531 -11.55605 -11.41822 -11.31247 -11.05062 -10.88347 -10.86772 -10.82449 -10.72877 -10.20036 -10.02881 -9.70538 -9.55039 -9.18571 -8.94438 -8.70374 -7.27484 -5.79196 -3.15498 2.50073 2.92485 3.38370 3.43092 3.45607 3.56482 4.26684 4.33968 4.47360 4.50973 4.55883 4.58446 4.64200 4.68399 4.81292 4.84854 4.91002 5.01023 5.11124 5.12711 5.15849 5.22112 5.31750 5.34635 5.38072 5.43614 5.49654 5.54130 5.55441 5.61487 5.63856 5.68281 5.75925 5.77595 5.78151 5.83566 5.85411 5.94111 6.29502 6.40195 6.53187 6.69040 6.70807 7.36764 7.74972 7.96839 8.09125 8.39231 9.18893 9.90767 10.10494 11.38802 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.036343 B = 0.002033 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.251235 B =13770.261398 C =14261.961816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.540 5.540 5 C 0.050 3.950 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.103 4.103 9 H 0.106 0.894 10 C 0.517 3.483 11 O -0.544 6.544 12 N -0.720 5.720 13 C 0.090 3.910 14 C 0.085 3.915 15 H 0.104 0.896 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.749 5.749 19 C -0.249 4.249 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.888 3.112 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.078 3.922 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.404 0.596 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.376 0.624 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.366 0.634 48 H 0.260 0.740 49 H 0.082 0.918 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.194 -21.074 -7.524 33.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.124 4.124 9 H 0.124 0.876 10 C 0.302 3.698 11 O -0.422 6.422 12 N -0.372 5.372 13 C -0.035 4.035 14 C 0.025 3.975 15 H 0.122 0.878 16 O -0.362 6.362 17 C 0.002 3.998 18 N -0.395 5.395 19 C -0.379 4.379 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.718 3.282 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.051 4.051 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.239 0.761 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.224 0.776 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.200 0.800 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.299 -20.909 -6.666 33.491 hybrid contribution 0.608 -0.296 -1.095 1.287 sum -24.690 -21.205 -7.762 33.459 Atomic orbital electron populations 1.21743 0.95607 1.01790 1.01854 1.21547 0.95384 0.96295 1.02655 1.22135 0.86716 0.97308 1.01053 1.61892 1.07491 1.22273 1.34802 1.22189 0.95544 0.99975 0.90119 1.21579 0.94390 0.96843 1.02462 1.21586 1.00371 0.96954 0.96181 1.21309 0.96450 0.93939 1.00750 0.87611 1.20557 0.82209 0.90942 0.76044 1.90707 1.57437 1.43545 1.50468 1.45933 1.07375 1.10470 1.73415 1.22079 0.94716 0.83879 1.02779 1.22444 0.89289 0.98406 0.87316 0.87811 1.86538 1.77474 1.53908 1.18282 1.21168 0.86357 0.92998 0.99244 1.42557 1.01082 1.09499 1.86406 1.19048 0.89723 0.88835 1.40273 0.89267 1.24671 0.96117 0.96764 1.01447 1.69706 1.06772 1.26765 1.54786 0.86492 0.79414 0.84355 0.77895 1.21016 1.21790 1.20298 1.21780 0.92738 0.88516 1.02019 0.92584 0.92880 0.92518 0.92017 0.91071 0.90623 0.94855 0.94896 0.90339 0.91006 0.90700 0.91611 0.90808 0.76078 0.90280 0.90947 0.77634 0.94496 0.95050 0.80027 0.93006 0.89967 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.70 5.87 -26.73 -0.16 -0.86 16 3 C 0.06 0.39 4.96 -3.83 -0.02 0.37 16 4 N -0.54 -4.32 4.65 -234.67 -1.09 -5.41 16 5 C 0.05 0.34 5.29 -3.83 -0.02 0.32 16 6 C -0.11 -0.73 6.09 -26.65 -0.16 -0.89 16 7 C -0.11 -0.83 5.16 -26.61 -0.14 -0.97 16 8 C -0.10 -0.90 2.69 -91.69 -0.25 -1.15 16 9 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 10 C 0.52 6.02 7.16 -10.99 -0.08 5.94 16 11 O -0.54 -8.41 15.98 5.56 0.09 -8.32 16 12 N -0.72 -7.63 5.41 -60.30 -0.33 -7.96 16 13 C 0.09 1.09 5.31 -4.04 -0.02 1.07 16 14 C 0.09 1.18 3.09 -26.73 -0.08 1.10 16 15 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 16 O -0.56 -7.82 13.03 -35.23 -0.46 -8.28 16 17 C 0.13 2.37 5.92 -4.04 -0.02 2.35 16 18 N -0.75 -17.61 5.30 -59.91 -0.32 -17.93 16 19 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 23 Si 0.89 22.34 27.74 -169.99 -4.71 17.63 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 27 C 0.08 0.73 4.03 -3.83 -0.02 0.72 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 6.44 -51.93 -0.33 0.01 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.54 7.98 -51.93 -0.41 0.13 16 34 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.47 6.22 -51.92 -0.32 0.15 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 41 H 0.40 3.62 7.94 -40.82 -0.32 3.30 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.38 4.37 9.05 45.56 0.41 4.78 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.37 8.58 5.41 -40.82 -0.22 8.36 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.08 0.84 7.99 -51.93 -0.41 0.43 16 50 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -33.81 393.49 -9.33 -43.15 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.37 Total: 9.31 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.85 Total: 0.47 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.96 Total: -59.88 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.37 Total: -16.60 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.81 -9.33 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753924908.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.083 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds