Wall clock time and date at job start Fri Apr 10 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 N 1.46899 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.46846 * 110.99844 * 66.04501 * 4 3 2 6 6 C 1.53040 * 109.52699 * 185.84110 * 5 4 3 7 7 C 1.53118 * 109.27746 * 300.82286 * 6 5 4 8 8 C 1.53121 * 109.16182 * 57.64952 * 7 6 5 9 9 H 1.09001 * 109.50455 * 62.32775 * 8 7 6 10 10 C 1.50699 * 109.50318 * 182.40587 * 8 7 6 11 11 O 1.21280 * 119.99807 * 119.99762 * 10 8 7 12 12 N 1.34776 * 120.00185 * 300.00161 * 10 8 7 13 13 C 1.46496 * 120.00053 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47103 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.46939 * 305.00302 * 14 13 12 16 16 O 1.42907 * 109.46997 * 64.99907 * 14 13 12 17 17 C 1.52996 * 109.47301 * 184.99639 * 14 13 12 18 18 N 1.46498 * 109.47059 * 179.97438 * 17 14 13 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 C 1.46842 * 111.00165 * 190.25184 * 4 3 2 28 28 H 1.09001 * 109.47133 * 300.00047 * 1 2 3 29 29 H 1.08999 * 109.47181 * 60.00403 * 1 2 3 30 30 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47133 * 239.99953 * 2 1 3 32 32 H 1.08996 * 109.46735 * 119.99861 * 2 1 3 33 33 H 1.08993 * 109.47523 * 59.99770 * 3 2 1 34 34 H 1.09003 * 109.47154 * 300.00182 * 3 2 1 35 35 H 1.08997 * 109.46737 * 65.82050 * 5 4 3 36 36 H 1.09009 * 109.45411 * 305.85318 * 5 4 3 37 37 H 1.09001 * 109.50393 * 180.87651 * 6 5 4 38 38 H 1.09008 * 109.50042 * 60.75944 * 6 5 4 39 39 H 1.08998 * 109.52015 * 297.74758 * 7 6 5 40 40 H 1.08995 * 109.57634 * 177.58529 * 7 6 5 41 41 H 0.97003 * 119.99535 * 359.97438 * 12 10 8 42 42 H 1.08992 * 109.47604 * 59.99655 * 13 12 10 43 43 H 1.09003 * 109.46647 * 299.99312 * 13 12 10 44 44 H 0.96694 * 114.00447 * 59.99736 * 16 14 13 45 45 H 1.09004 * 109.47066 * 60.00027 * 17 14 13 46 46 H 1.08994 * 109.46974 * 300.00175 * 17 14 13 47 47 H 0.97001 * 120.00384 * 0.02562 * 18 17 14 48 48 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.46131 * 54.14888 * 27 4 3 50 50 H 1.08997 * 109.46785 * 294.17689 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0357 0.8858 -1.2519 6 6 5.5586 0.7666 -1.1582 7 6 6.1592 2.1515 -0.9010 8 6 5.5579 2.7294 0.3832 9 1 5.8214 2.0921 1.2273 10 6 6.0994 4.1170 0.6121 11 8 5.3419 5.0627 0.6634 12 7 7.4255 4.3070 0.7597 13 6 7.9519 5.6558 0.9829 14 6 9.4747 5.5934 1.1168 15 1 9.7416 4.8871 1.9029 16 8 10.0447 5.1652 -0.1218 17 6 10.0127 6.9806 1.4732 18 7 11.4708 6.9205 1.6020 19 6 12.1778 8.0514 1.9128 20 1 11.6600 8.9866 2.0673 21 6 13.5599 7.9958 2.0292 22 7 14.2393 9.0826 2.3284 23 14 14.4554 6.3786 1.7612 24 1 14.8195 6.2459 0.3277 25 1 15.6878 6.3520 2.5894 26 1 13.5711 5.2520 2.1537 27 6 4.0350 2.7916 0.2446 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.7732 1.5435 -2.0805 36 1 3.6039 -0.1008 -1.4206 37 1 5.9507 0.3679 -2.0938 38 1 5.8215 0.0980 -0.3384 39 1 5.9293 2.8095 -1.7390 40 1 7.2401 2.0660 -0.7907 41 1 8.0314 3.5505 0.7190 42 1 7.5236 6.0664 1.8972 43 1 7.6868 6.2933 0.1393 44 1 9.8475 5.7479 -0.8678 45 1 9.5780 7.3072 2.4179 46 1 9.7458 7.6867 0.6870 47 1 11.9359 6.0808 1.4629 48 1 15.2052 9.0437 2.4101 49 1 3.6029 3.1894 1.1628 50 1 3.7726 3.4405 -0.5909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753924908.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:35 Heat of formation + Delta-G solvation = -117.602072 kcal Electronic energy + Delta-G solvation = -26236.997672 eV Core-core repulsion = 22490.418226 eV Total energy + Delta-G solvation = -3746.579446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36792 -39.69459 -38.87359 -36.20229 -35.95252 -35.30576 -33.49606 -32.91615 -32.17048 -30.75549 -27.53369 -27.09602 -25.21266 -24.10083 -23.68841 -22.85487 -22.24340 -21.27242 -20.63715 -19.78613 -18.46089 -17.66248 -17.22914 -17.01561 -16.54161 -16.36496 -16.18212 -15.99346 -15.57410 -15.39766 -15.26602 -14.95153 -14.89758 -14.46952 -14.43720 -14.20530 -13.96696 -13.68396 -13.54897 -13.35212 -13.15367 -12.83352 -12.81370 -12.60306 -12.46629 -12.23917 -12.07754 -11.95966 -11.88685 -11.83854 -11.62353 -11.44033 -11.30520 -11.13684 -11.02261 -10.69115 -10.14906 -9.35014 -9.32472 -8.04192 -5.38147 1.39663 1.42725 1.50206 1.58136 2.03564 2.48245 2.90501 3.26464 3.34741 3.52901 3.58537 3.71947 3.85952 3.97974 4.00718 4.07680 4.11368 4.16547 4.24321 4.25482 4.36303 4.45675 4.54836 4.58873 4.61022 4.67212 4.70809 4.76372 4.80014 4.88337 4.91519 4.95658 4.96533 5.09359 5.15170 5.16881 5.23746 5.30061 5.35350 5.38862 5.43561 5.72904 6.04576 6.11956 6.19082 6.50054 6.74863 7.06992 7.19765 7.82043 8.01824 9.17033 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.036343 B = 0.002033 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.251235 B =13770.261398 C =14261.961816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C 0.054 3.946 4 N -0.540 5.540 5 C 0.047 3.953 6 C -0.110 4.110 7 C -0.109 4.109 8 C -0.094 4.094 9 H 0.120 0.880 10 C 0.517 3.483 11 O -0.587 6.587 12 N -0.709 5.709 13 C 0.100 3.900 14 C 0.107 3.893 15 H 0.111 0.889 16 O -0.562 6.562 17 C 0.123 3.877 18 N -0.751 5.751 19 C -0.240 4.240 20 H 0.056 0.944 21 C -0.063 4.063 22 N -0.983 5.983 23 Si 0.960 3.040 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.252 1.252 27 C 0.082 3.918 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.416 0.584 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.387 0.613 45 H 0.037 0.963 46 H 0.034 0.966 47 H 0.370 0.630 48 H 0.258 0.742 49 H 0.068 0.932 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.558 -24.374 -8.294 36.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.265 5.265 5 C -0.081 4.081 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.115 4.115 9 H 0.138 0.862 10 C 0.304 3.696 11 O -0.467 6.467 12 N -0.361 5.361 13 C -0.025 4.025 14 C 0.047 3.953 15 H 0.129 0.871 16 O -0.369 6.369 17 C -0.004 4.004 18 N -0.398 5.398 19 C -0.371 4.371 20 H 0.074 0.926 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.787 3.213 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.177 1.177 27 C -0.047 4.047 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.253 0.747 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.237 0.763 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.204 0.796 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -25.700 -24.258 -7.456 36.118 hybrid contribution 0.609 0.824 -0.867 1.342 sum -25.091 -23.433 -8.323 35.326 Atomic orbital electron populations 1.21733 0.94967 1.02301 1.01844 1.21491 0.95887 0.95141 1.02687 1.22187 0.86349 0.98252 1.00617 1.61950 1.07954 1.21046 1.35537 1.22281 0.96278 1.00278 0.89244 1.21576 0.93618 0.96108 1.03477 1.21588 1.01116 0.97288 0.94718 1.21279 0.95801 0.92261 1.02187 0.86169 1.21046 0.82019 0.91587 0.74978 1.90694 1.58457 1.45106 1.52434 1.45797 1.07328 1.10220 1.72707 1.21839 0.93397 0.84734 1.02549 1.22129 0.89911 0.95610 0.87622 0.87128 1.86517 1.77623 1.54210 1.18533 1.21394 0.83557 0.96155 0.99307 1.42519 1.03055 1.08002 1.86193 1.19048 0.90077 0.89250 1.38735 0.92630 1.25528 0.97130 1.00669 1.02107 1.69888 1.06953 1.29500 1.56961 0.85333 0.77916 0.80270 0.77735 1.20481 1.22262 1.17665 1.21663 0.93371 0.89053 1.00579 0.92699 0.92829 0.91726 0.91506 0.91393 0.91137 0.95290 0.95640 0.89080 0.89482 0.90145 0.92702 0.89470 0.74701 0.90808 0.91129 0.76326 0.94538 0.94832 0.79647 0.93273 0.91336 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.59 16 2 C -0.11 -1.18 5.87 30.59 0.18 -1.00 16 3 C 0.05 0.73 4.96 86.30 0.43 1.15 16 4 N -0.54 -8.06 4.65 -896.37 -4.17 -12.23 16 5 C 0.05 0.56 5.29 86.33 0.46 1.02 16 6 C -0.11 -1.09 6.09 30.65 0.19 -0.90 16 7 C -0.11 -1.36 5.16 30.67 0.16 -1.20 16 8 C -0.09 -1.51 2.69 -11.48 -0.03 -1.54 16 9 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 10 C 0.52 11.43 7.16 87.66 0.63 12.06 16 11 O -0.59 -18.10 15.98 -3.03 -0.05 -18.15 16 12 N -0.71 -13.50 5.41 -463.07 -2.50 -16.00 16 13 C 0.10 2.24 5.31 86.38 0.46 2.70 16 14 C 0.11 2.71 3.09 30.59 0.09 2.81 16 15 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 16 O -0.56 -14.06 13.03 -148.98 -1.94 -16.00 16 17 C 0.12 4.31 5.92 86.38 0.51 4.82 16 18 N -0.75 -34.29 5.30 -343.46 -1.82 -36.11 16 19 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.98 -63.12 13.97 21.65 0.30 -62.82 16 23 Si 0.96 45.62 27.74 68.60 1.90 47.52 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 27 C 0.08 1.52 4.03 86.33 0.35 1.87 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.62 6.44 -2.39 -0.02 0.61 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.01 7.98 -2.39 -0.02 0.99 16 34 H 0.03 0.42 8.12 -2.39 -0.02 0.40 16 35 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.09 0.88 6.22 -2.38 -0.01 0.86 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.87 7.64 -2.39 -0.02 0.85 16 41 H 0.42 6.14 7.94 -92.71 -0.74 5.41 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.39 7.93 9.05 -74.06 -0.67 7.26 16 45 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.37 16.32 5.41 -92.71 -0.50 15.82 16 48 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 49 H 0.07 1.43 7.99 -2.39 -0.02 1.42 16 50 H 0.02 0.50 8.08 -2.39 -0.02 0.48 16 Total: -1.00 -73.42 393.49 -3.84 -77.26 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -1.04 Total: 31.40 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.48 Total: 5.13 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -8.19 Total: -127.16 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.99 Total: -34.16 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -73.42 -3.84 -77.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753924908.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.341 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds