Wall clock time and date at job start Fri Apr 10 2020 18:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47459 * 2 1 4 4 N 1.46897 * 109.47289 * 179.97438 * 3 2 1 5 5 C 1.46850 * 111.00154 * 294.21290 * 4 3 2 6 6 C 1.53034 * 109.52501 * 174.16025 * 5 4 3 7 7 C 1.53122 * 109.27942 * 59.17932 * 6 5 4 8 8 C 1.53123 * 109.15963 * 302.34777 * 7 6 5 9 9 H 1.09004 * 109.53403 * 297.69280 * 8 7 6 10 10 C 1.50696 * 109.50329 * 177.59300 * 8 7 6 11 11 O 1.21285 * 120.00167 * 240.19193 * 10 8 7 12 12 N 1.34784 * 119.99813 * 60.19682 * 10 8 7 13 13 C 1.46503 * 119.99541 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47299 * 59.99963 * 14 13 12 16 16 O 1.42905 * 109.47234 * 299.99910 * 14 13 12 17 17 C 1.53001 * 109.47457 * 180.02562 * 14 13 12 18 18 N 1.46496 * 109.47205 * 185.00151 * 17 14 13 19 19 C 1.36945 * 119.99718 * 179.97438 * 18 17 14 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.46845 * 110.99949 * 170.00336 * 4 3 2 28 28 H 1.08998 * 109.47020 * 300.00292 * 1 2 3 29 29 H 1.09002 * 109.46425 * 60.00017 * 1 2 3 30 30 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47478 * 239.99723 * 2 1 3 32 32 H 1.08996 * 109.46991 * 120.00372 * 2 1 3 33 33 H 1.09007 * 109.46468 * 59.99933 * 3 2 1 34 34 H 1.08996 * 109.47323 * 300.00169 * 3 2 1 35 35 H 1.09000 * 109.46068 * 294.17697 * 5 4 3 36 36 H 1.08996 * 109.46421 * 54.14022 * 5 4 3 37 37 H 1.08998 * 109.50563 * 179.11919 * 6 5 4 38 38 H 1.08998 * 109.50105 * 299.24107 * 6 5 4 39 39 H 1.08995 * 109.52535 * 182.43876 * 7 6 5 40 40 H 1.09001 * 109.52121 * 62.25044 * 7 6 5 41 41 H 0.96995 * 119.99797 * 0.02562 * 12 10 8 42 42 H 1.09004 * 109.47111 * 60.00235 * 13 12 10 43 43 H 1.08991 * 109.47364 * 299.99599 * 13 12 10 44 44 H 0.96697 * 114.00498 * 300.00510 * 16 14 13 45 45 H 1.08997 * 109.46922 * 64.99193 * 17 14 13 46 46 H 1.09000 * 109.46483 * 305.00012 * 17 14 13 47 47 H 0.96996 * 120.00499 * 359.97438 * 18 17 14 48 48 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.46551 * 65.82022 * 27 4 3 50 50 H 1.08998 * 109.46119 * 305.85336 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0348 0.8803 1.2513 6 6 5.5577 0.7615 1.1582 7 6 6.1586 2.1474 0.9074 8 6 5.5584 2.7308 -0.3748 9 1 5.8219 2.0971 -1.2217 10 6 6.1001 4.1193 -0.5975 11 8 5.3430 5.0657 -0.6420 12 7 7.4261 4.3093 -0.7473 13 6 7.9526 5.6591 -0.9643 14 6 9.4752 5.5966 -1.1009 15 1 9.7383 4.9634 -1.9482 16 8 10.0388 5.0519 0.0940 17 6 10.0254 7.0063 -1.3269 18 7 11.4671 6.9337 -1.5765 19 6 12.1804 8.0795 -1.8080 20 1 11.6800 9.0365 -1.8070 21 6 13.5465 8.0108 -2.0440 22 7 14.1563 6.8443 -2.0456 23 14 14.5195 9.5737 -2.3605 24 1 14.5338 9.8614 -3.8173 25 1 13.8857 10.7061 -1.6385 26 1 15.9124 9.3960 -1.8774 27 6 4.0354 2.7925 -0.2373 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6768 1.9563 -0.8899 35 1 3.7717 1.5347 2.0824 36 1 3.6029 -0.1068 1.4157 37 1 5.9491 0.3589 2.0924 38 1 5.8212 0.0964 0.3359 39 1 7.2395 2.0613 0.7973 40 1 5.9281 2.8019 1.7480 41 1 8.0315 3.5523 -0.7121 42 1 7.6899 6.2922 -0.1167 43 1 7.5225 6.0747 -1.8754 44 1 9.8445 5.5652 0.8901 45 1 9.8399 7.6149 -0.4419 46 1 9.5298 7.4559 -2.1874 47 1 11.9164 6.0741 -1.5777 48 1 15.1109 6.7963 -2.2109 49 1 3.7723 3.4379 0.6007 50 1 3.6040 3.1941 -1.1542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753924909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:38 Heat of formation + Delta-G solvation = -94.018141 kcal Electronic energy + Delta-G solvation = -26156.872483 eV Core-core repulsion = 22411.315714 eV Total energy + Delta-G solvation = -3745.556770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45664 -38.82229 -37.58207 -35.31613 -34.40651 -34.00678 -32.33195 -31.51731 -31.20414 -29.03607 -26.69041 -25.69700 -24.25029 -23.30705 -22.53029 -21.55726 -21.41718 -20.49229 -19.78146 -17.56866 -17.15473 -16.47694 -16.22864 -15.98957 -15.78414 -15.13839 -15.11636 -14.75070 -14.52187 -14.43488 -14.29327 -13.73975 -13.70693 -13.53288 -13.16408 -13.01759 -12.89203 -12.59753 -12.30151 -12.27242 -12.05109 -11.88497 -11.77532 -11.51936 -11.37499 -11.00455 -10.97642 -10.83069 -10.81936 -10.70053 -10.62069 -10.19193 -9.94149 -9.79802 -9.47778 -9.10741 -8.91615 -8.66340 -6.95400 -5.77574 -3.07347 2.56371 2.99525 3.42894 3.47862 3.49730 3.61363 4.32252 4.38531 4.52818 4.53891 4.60016 4.66918 4.70398 4.82497 4.86647 4.92353 4.94932 5.05431 5.15671 5.20368 5.23032 5.26184 5.35209 5.39075 5.42262 5.54393 5.58528 5.59386 5.61594 5.65271 5.68768 5.77438 5.79601 5.84426 5.88483 5.93974 5.99049 6.18076 6.38964 6.49692 6.65634 6.73020 6.74802 7.45256 7.67258 7.90691 8.16281 8.40520 9.52229 10.08550 10.44254 11.44737 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.001895 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.864561 B =14772.728371 C =15170.264176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.540 5.540 5 C 0.050 3.950 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.103 4.103 9 H 0.106 0.894 10 C 0.517 3.483 11 O -0.546 6.546 12 N -0.719 5.719 13 C 0.089 3.911 14 C 0.089 3.911 15 H 0.105 0.895 16 O -0.553 6.553 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.078 3.922 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.405 0.595 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.373 0.627 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.388 0.612 48 H 0.255 0.745 49 H 0.042 0.958 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.728 -16.016 6.808 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.125 4.125 9 H 0.124 0.876 10 C 0.302 3.698 11 O -0.424 6.424 12 N -0.370 5.370 13 C -0.035 4.035 14 C 0.029 3.971 15 H 0.123 0.877 16 O -0.357 6.357 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.208 1.208 26 H -0.217 1.217 27 C -0.050 4.050 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.241 0.759 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.220 0.780 45 H 0.041 0.959 46 H 0.046 0.954 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.834 -15.890 5.955 30.078 hybrid contribution 0.585 1.298 0.788 1.628 sum -24.249 -14.592 6.743 29.093 Atomic orbital electron populations 1.21742 0.95630 1.01773 1.01837 1.21549 0.95362 0.96312 1.02667 1.22134 0.86762 0.97287 1.01021 1.61889 1.07469 1.22086 1.35011 1.22187 0.95595 0.99917 0.90116 1.21579 0.94337 0.96873 1.02491 1.21588 1.00467 0.96875 0.96167 1.21306 0.96386 0.93955 1.00805 0.87604 1.20556 0.82244 0.90930 0.76048 1.90701 1.57497 1.43553 1.50649 1.45926 1.07359 1.10492 1.73263 1.22095 0.95080 0.83771 1.02589 1.22401 0.88819 0.97207 0.88643 0.87718 1.86574 1.77912 1.54204 1.17054 1.21199 0.87837 0.92735 0.98392 1.42231 1.01441 1.07539 1.85821 1.19224 0.90437 0.86995 1.40921 0.91204 1.24758 0.96652 0.96793 1.02608 1.69679 1.09527 1.22517 1.56080 0.86177 0.79521 0.82502 0.77888 1.21671 1.20761 1.21715 1.21778 0.92792 0.88470 1.01988 0.92893 0.92598 0.92526 0.91065 0.92009 0.94893 0.90636 0.94924 0.90356 0.91001 0.90681 0.90711 0.91638 0.75937 0.91165 0.90467 0.78030 0.95947 0.95385 0.77733 0.93470 0.94017 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.73 5.86 -26.73 -0.16 -0.89 16 3 C 0.06 0.41 4.96 -3.83 -0.02 0.39 16 4 N -0.54 -4.50 4.66 -234.67 -1.09 -5.60 16 5 C 0.05 0.36 5.29 -3.83 -0.02 0.34 16 6 C -0.12 -0.77 6.09 -26.65 -0.16 -0.94 16 7 C -0.11 -0.89 5.16 -26.60 -0.14 -1.03 16 8 C -0.10 -0.96 2.69 -91.69 -0.25 -1.20 16 9 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 10 C 0.52 6.32 7.16 -10.98 -0.08 6.25 16 11 O -0.55 -8.73 15.98 5.55 0.09 -8.64 16 12 N -0.72 -8.18 5.35 -60.29 -0.32 -8.50 16 13 C 0.09 1.16 5.34 -4.04 -0.02 1.14 16 14 C 0.09 1.35 3.09 -26.73 -0.08 1.26 16 15 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 16 O -0.55 -8.48 13.03 -35.23 -0.46 -8.94 16 17 C 0.13 2.45 5.90 -4.04 -0.02 2.43 16 18 N -0.73 -18.31 5.55 -59.91 -0.33 -18.64 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 23 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 C 0.08 0.76 4.03 -3.83 -0.02 0.75 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 33 H 0.03 0.25 8.12 -51.92 -0.42 -0.17 16 34 H 0.08 0.56 7.99 -51.93 -0.41 0.15 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.49 6.21 -51.93 -0.32 0.17 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.54 7.66 -51.93 -0.40 0.15 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.41 4.02 7.83 -40.82 -0.32 3.70 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.37 4.76 9.04 45.56 0.41 5.17 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 50 H 0.08 0.87 7.99 -51.93 -0.42 0.46 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -32.97 396.63 -9.69 -42.66 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -8.41 Total: 11.21 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.84 Total: 0.61 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -1.02 Total: -60.31 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.37 Total: -17.58 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.97 -9.69 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753924909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.353 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds