Wall clock time and date at job start Fri Apr 10 2020 18:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47459 * 2 1 4 4 N 1.46897 * 109.47289 * 179.97438 * 3 2 1 5 5 C 1.46850 * 111.00154 * 294.21290 * 4 3 2 6 6 C 1.53034 * 109.52501 * 174.16025 * 5 4 3 7 7 C 1.53122 * 109.27942 * 59.17932 * 6 5 4 8 8 C 1.53123 * 109.15963 * 302.34777 * 7 6 5 9 9 H 1.09004 * 109.53403 * 297.69280 * 8 7 6 10 10 C 1.50696 * 109.50329 * 177.59300 * 8 7 6 11 11 O 1.21285 * 120.00167 * 240.19193 * 10 8 7 12 12 N 1.34784 * 119.99813 * 60.19682 * 10 8 7 13 13 C 1.46503 * 119.99541 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47299 * 59.99963 * 14 13 12 16 16 O 1.42905 * 109.47234 * 299.99910 * 14 13 12 17 17 C 1.53001 * 109.47457 * 180.02562 * 14 13 12 18 18 N 1.46496 * 109.47205 * 185.00151 * 17 14 13 19 19 C 1.36945 * 119.99718 * 179.97438 * 18 17 14 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.46845 * 110.99949 * 170.00336 * 4 3 2 28 28 H 1.08998 * 109.47020 * 300.00292 * 1 2 3 29 29 H 1.09002 * 109.46425 * 60.00017 * 1 2 3 30 30 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47478 * 239.99723 * 2 1 3 32 32 H 1.08996 * 109.46991 * 120.00372 * 2 1 3 33 33 H 1.09007 * 109.46468 * 59.99933 * 3 2 1 34 34 H 1.08996 * 109.47323 * 300.00169 * 3 2 1 35 35 H 1.09000 * 109.46068 * 294.17697 * 5 4 3 36 36 H 1.08996 * 109.46421 * 54.14022 * 5 4 3 37 37 H 1.08998 * 109.50563 * 179.11919 * 6 5 4 38 38 H 1.08998 * 109.50105 * 299.24107 * 6 5 4 39 39 H 1.08995 * 109.52535 * 182.43876 * 7 6 5 40 40 H 1.09001 * 109.52121 * 62.25044 * 7 6 5 41 41 H 0.96995 * 119.99797 * 0.02562 * 12 10 8 42 42 H 1.09004 * 109.47111 * 60.00235 * 13 12 10 43 43 H 1.08991 * 109.47364 * 299.99599 * 13 12 10 44 44 H 0.96697 * 114.00498 * 300.00510 * 16 14 13 45 45 H 1.08997 * 109.46922 * 64.99193 * 17 14 13 46 46 H 1.09000 * 109.46483 * 305.00012 * 17 14 13 47 47 H 0.96996 * 120.00499 * 359.97438 * 18 17 14 48 48 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.46551 * 65.82022 * 27 4 3 50 50 H 1.08998 * 109.46119 * 305.85336 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0348 0.8803 1.2513 6 6 5.5577 0.7615 1.1582 7 6 6.1586 2.1474 0.9074 8 6 5.5584 2.7308 -0.3748 9 1 5.8219 2.0971 -1.2217 10 6 6.1001 4.1193 -0.5975 11 8 5.3430 5.0657 -0.6420 12 7 7.4261 4.3093 -0.7473 13 6 7.9526 5.6591 -0.9643 14 6 9.4752 5.5966 -1.1009 15 1 9.7383 4.9634 -1.9482 16 8 10.0388 5.0519 0.0940 17 6 10.0254 7.0063 -1.3269 18 7 11.4671 6.9337 -1.5765 19 6 12.1804 8.0795 -1.8080 20 1 11.6800 9.0365 -1.8070 21 6 13.5465 8.0108 -2.0440 22 7 14.1563 6.8443 -2.0456 23 14 14.5195 9.5737 -2.3605 24 1 14.5338 9.8614 -3.8173 25 1 13.8857 10.7061 -1.6385 26 1 15.9124 9.3960 -1.8774 27 6 4.0354 2.7925 -0.2373 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6768 1.9563 -0.8899 35 1 3.7717 1.5347 2.0824 36 1 3.6029 -0.1068 1.4157 37 1 5.9491 0.3589 2.0924 38 1 5.8212 0.0964 0.3359 39 1 7.2395 2.0613 0.7973 40 1 5.9281 2.8019 1.7480 41 1 8.0315 3.5523 -0.7121 42 1 7.6899 6.2922 -0.1167 43 1 7.5225 6.0747 -1.8754 44 1 9.8445 5.5652 0.8901 45 1 9.8399 7.6149 -0.4419 46 1 9.5298 7.4559 -2.1874 47 1 11.9164 6.0741 -1.5777 48 1 15.1109 6.7963 -2.2109 49 1 3.7723 3.4379 0.6007 50 1 3.6040 3.1941 -1.1542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753924909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:37 Heat of formation + Delta-G solvation = -120.084737 kcal Electronic energy + Delta-G solvation = -26158.002816 eV Core-core repulsion = 22411.315714 eV Total energy + Delta-G solvation = -3746.687102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36180 -39.67744 -38.81643 -36.09699 -35.94318 -35.27365 -33.24155 -32.87551 -32.14656 -30.47220 -27.42923 -27.04990 -25.32166 -24.25595 -23.78112 -22.77223 -22.23557 -21.24711 -20.61442 -19.24931 -18.43864 -17.69627 -17.19779 -17.01049 -16.47130 -16.35886 -16.18913 -16.00177 -15.51921 -15.45280 -15.14668 -14.93443 -14.87641 -14.44956 -14.37687 -14.12689 -13.88874 -13.63386 -13.53988 -13.20534 -12.96209 -12.82899 -12.75655 -12.59703 -12.45972 -12.16540 -12.07354 -11.98025 -11.94696 -11.81455 -11.61941 -11.43255 -11.30025 -11.10093 -10.97719 -10.68165 -10.14304 -9.34118 -9.01691 -7.95517 -5.25075 1.47626 1.49269 1.57728 1.58192 2.04402 2.55632 2.91699 3.35802 3.47559 3.58296 3.60138 3.72695 3.86673 3.99921 4.02343 4.12378 4.18731 4.21452 4.24935 4.35967 4.41824 4.46563 4.55487 4.60809 4.61466 4.67646 4.70739 4.76494 4.80349 4.88680 4.92979 4.96192 4.96987 5.09871 5.15944 5.20746 5.24404 5.30663 5.35428 5.39268 5.44085 5.47813 6.05256 6.12706 6.25655 6.50506 6.79028 7.19475 7.32918 8.07892 8.31207 9.27566 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.001895 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.864561 B =14772.728371 C =15170.264176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.054 3.946 4 N -0.541 5.541 5 C 0.047 3.953 6 C -0.110 4.110 7 C -0.109 4.109 8 C -0.094 4.094 9 H 0.119 0.881 10 C 0.517 3.483 11 O -0.586 6.586 12 N -0.709 5.709 13 C 0.102 3.898 14 C 0.109 3.891 15 H 0.101 0.899 16 O -0.561 6.561 17 C 0.122 3.878 18 N -0.739 5.739 19 C -0.251 4.251 20 H 0.076 0.924 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.286 1.286 25 H -0.270 1.270 26 H -0.295 1.295 27 C 0.083 3.917 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.415 0.585 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.377 0.623 48 H 0.252 0.748 49 H 0.023 0.977 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.355 -16.763 7.275 31.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.265 5.265 5 C -0.080 4.080 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.116 4.116 9 H 0.137 0.863 10 C 0.304 3.696 11 O -0.467 6.467 12 N -0.361 5.361 13 C -0.023 4.023 14 C 0.050 3.950 15 H 0.119 0.881 16 O -0.368 6.368 17 C -0.005 4.005 18 N -0.382 5.382 19 C -0.383 4.383 20 H 0.094 0.906 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.195 1.195 26 H -0.221 1.221 27 C -0.046 4.046 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.252 0.748 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.234 0.766 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.209 0.791 48 H 0.060 0.940 49 H 0.041 0.959 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.495 -16.641 6.440 31.119 hybrid contribution 0.689 1.531 0.670 1.807 sum -24.806 -15.110 7.109 29.903 Atomic orbital electron populations 1.21730 0.94934 1.02300 1.01852 1.21494 0.95912 0.95140 1.02681 1.22188 0.86299 0.98261 1.00636 1.61943 1.08013 1.20837 1.35749 1.22274 0.96189 1.00282 0.89279 1.21575 0.93701 0.96041 1.03478 1.21588 1.01059 0.97321 0.94766 1.21279 0.95904 0.92197 1.02181 0.86292 1.21050 0.81948 0.91642 0.74961 1.90686 1.58421 1.45061 1.52516 1.45813 1.07397 1.10178 1.72675 1.21830 0.93317 0.84691 1.02507 1.22074 0.89800 0.94508 0.88661 0.88130 1.86554 1.78191 1.54467 1.17551 1.21410 0.84913 0.95661 0.98558 1.42403 1.03666 1.06238 1.85900 1.19649 0.90990 0.88116 1.39501 0.90630 1.25584 0.97835 0.99799 1.03402 1.69833 1.09428 1.24601 1.57856 0.85129 0.77649 0.79190 0.77698 1.21355 1.19461 1.22118 1.21655 0.93235 0.89069 1.00621 0.92807 0.92692 0.91727 0.91423 0.91507 0.95259 0.91108 0.95575 0.89031 0.89467 0.90215 0.89661 0.92613 0.74778 0.91078 0.90835 0.76649 0.95208 0.94974 0.79107 0.93970 0.95855 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.11 -1.24 5.86 30.59 0.18 -1.06 16 3 C 0.05 0.76 4.96 86.30 0.43 1.19 16 4 N -0.54 -8.53 4.66 -896.37 -4.17 -12.71 16 5 C 0.05 0.61 5.29 86.32 0.46 1.07 16 6 C -0.11 -1.23 6.09 30.65 0.19 -1.05 16 7 C -0.11 -1.53 5.16 30.68 0.16 -1.37 16 8 C -0.09 -1.65 2.69 -11.49 -0.03 -1.68 16 9 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 10 C 0.52 12.27 7.16 87.65 0.63 12.89 16 11 O -0.59 -18.76 15.98 -3.04 -0.05 -18.81 16 12 N -0.71 -15.18 5.35 -463.05 -2.48 -17.65 16 13 C 0.10 2.52 5.34 86.38 0.46 2.98 16 14 C 0.11 3.18 3.09 30.59 0.09 3.28 16 15 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 16 O -0.56 -16.43 13.03 -148.98 -1.94 -18.37 16 17 C 0.12 4.59 5.90 86.38 0.51 5.10 16 18 N -0.74 -37.13 5.55 -343.47 -1.91 -39.04 16 19 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 22 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 23 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 27 C 0.08 1.61 4.03 86.33 0.35 1.96 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 33 H 0.03 0.43 8.12 -2.38 -0.02 0.41 16 34 H 0.07 1.05 7.99 -2.39 -0.02 1.03 16 35 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.96 6.21 -2.39 -0.01 0.94 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.03 7.66 -2.39 -0.02 1.01 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.42 7.44 7.83 -92.71 -0.73 6.71 16 42 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.38 9.20 9.04 -74.06 -0.67 8.53 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.38 20.44 7.67 -92.71 -0.71 19.73 16 48 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 49 H 0.02 0.53 8.08 -2.39 -0.02 0.51 16 50 H 0.07 1.50 7.99 -2.39 -0.02 1.48 16 Total: -1.00 -70.08 396.63 -3.98 -74.06 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -1.18 Total: 37.77 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.44 Total: 5.71 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -8.28 Total: -128.46 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.99 Total: -37.18 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.08 -3.98 -74.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753924909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.029 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds