Wall clock time and date at job start Fri Apr 10 2020 18:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47394 * 2 1 4 4 C 1.53007 * 109.47092 * 119.99465 * 2 1 3 5 5 N 1.46501 * 109.47087 * 179.97438 * 4 2 1 6 6 C 1.46493 * 120.00301 * 265.54899 * 5 4 2 7 7 C 1.36938 * 119.99855 * 85.54875 * 5 4 2 8 8 H 1.08000 * 119.99956 * 24.21494 * 7 5 4 9 9 C 1.38811 * 120.00020 * 204.22307 * 7 5 4 10 10 N 1.31618 * 120.00299 * 10.01542 * 9 7 5 11 11 Si 1.86799 * 119.99849 * 190.01976 * 9 7 5 12 12 H 1.48504 * 109.47298 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47273 * 119.99644 * 11 9 7 14 14 H 1.48495 * 109.47420 * 239.99611 * 11 9 7 15 15 N 1.46493 * 109.47522 * 239.99809 * 2 1 3 16 16 C 1.34779 * 119.99692 * 301.76519 * 15 2 1 17 17 O 1.21278 * 120.00217 * 4.51824 * 16 15 2 18 18 C 1.50699 * 119.99928 * 184.52812 * 16 15 2 19 19 C 1.52996 * 109.47675 * 85.49579 * 18 16 15 20 20 C 1.53001 * 109.46946 * 205.49568 * 18 16 15 21 21 N 1.46899 * 109.47300 * 325.49092 * 18 16 15 22 22 C 1.47016 * 111.00010 * 301.55899 * 21 18 16 23 23 C 1.53100 * 109.25778 * 177.60288 * 22 21 18 24 24 O 1.43010 * 109.25939 * 56.84750 * 23 22 21 25 25 C 1.43016 * 113.73940 * 301.33056 * 24 23 22 26 26 C 1.47015 * 111.00380 * 177.91925 * 21 18 16 27 27 H 1.09002 * 109.47131 * 59.99897 * 1 2 3 28 28 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46940 * 300.00581 * 1 2 3 30 30 H 1.08997 * 109.47366 * 299.94428 * 4 2 1 31 31 H 1.09003 * 109.46463 * 59.94107 * 4 2 1 32 32 H 1.08997 * 109.47472 * 95.23859 * 6 5 4 33 33 H 1.08999 * 109.46986 * 215.24097 * 6 5 4 34 34 H 1.09000 * 109.47160 * 335.23730 * 6 5 4 35 35 H 0.96995 * 119.99809 * 180.02562 * 10 9 7 36 36 H 0.96996 * 120.00731 * 121.47958 * 15 2 1 37 37 H 1.09004 * 109.47302 * 60.00014 * 19 18 16 38 38 H 1.08998 * 109.47446 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.46990 * 299.99810 * 19 18 16 40 40 H 1.09000 * 109.47480 * 59.99835 * 20 18 16 41 41 H 1.09007 * 109.46983 * 179.97438 * 20 18 16 42 42 H 1.08998 * 109.47535 * 299.99665 * 20 18 16 43 43 H 1.09000 * 109.50906 * 297.54033 * 22 21 18 44 44 H 1.09006 * 109.50694 * 57.67321 * 22 21 18 45 45 H 1.08996 * 109.50626 * 296.91182 * 23 22 21 46 46 H 1.08997 * 109.54253 * 176.80363 * 23 22 21 47 47 H 1.08995 * 109.50681 * 298.73117 * 25 24 23 48 48 H 1.09007 * 109.54484 * 178.62455 * 25 24 23 49 49 H 1.08992 * 109.50937 * 302.33393 * 26 21 18 50 50 H 1.09005 * 109.50193 * 62.42140 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5050 -0.7217 1.2491 6 6 4.2370 -1.8667 0.7020 7 6 4.1902 0.3481 1.7601 8 1 3.7218 0.9898 2.4918 9 6 5.4866 0.6081 1.3376 10 7 5.9877 -0.0453 0.3108 11 14 6.5203 1.8851 2.2265 12 1 5.7313 2.4738 3.3384 13 1 7.7416 1.2405 2.7727 14 1 6.9095 2.9566 1.2750 15 7 2.0184 -0.6906 -1.1961 16 6 1.6637 -1.9701 -1.4274 17 8 0.8757 -2.5238 -0.6903 18 6 2.2465 -2.7130 -2.6019 19 6 3.5916 -3.3233 -2.2030 20 6 1.2875 -3.8265 -3.0278 21 7 2.4438 -1.7822 -3.7211 22 6 1.1755 -1.1474 -4.1083 23 6 1.4363 -0.1437 -5.2346 24 8 2.0617 -0.8166 -6.3306 25 6 3.2999 -1.4457 -5.9891 26 6 3.0580 -2.4626 -4.8705 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6775 -0.2067 2.1393 31 1 1.6757 -1.7485 1.2499 32 1 4.4998 -1.6673 -0.3368 33 1 5.1456 -2.0278 1.2822 34 1 3.6103 -2.7570 0.7538 35 1 6.8937 0.1361 0.0159 36 1 2.5936 -0.2258 -1.8237 37 1 3.4452 -4.0141 -1.3726 38 1 4.0129 -3.8610 -3.0524 39 1 4.2748 -2.5300 -1.8997 40 1 0.3292 -3.3918 -3.3121 41 1 1.7089 -4.3636 -3.8777 42 1 1.1411 -4.5173 -2.1975 43 1 0.4777 -1.9098 -4.4545 44 1 0.7512 -0.6280 -3.2490 45 1 2.0916 0.6481 -4.8719 46 1 0.4914 0.2882 -5.5641 47 1 4.0094 -0.6917 -5.6484 48 1 3.7031 -1.9560 -6.8639 49 1 4.0077 -2.9034 -4.5676 50 1 2.3906 -3.2466 -5.2284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754338264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:11 Heat of formation + Delta-G solvation = -40.438752 kcal Electronic energy + Delta-G solvation = -29676.695441 eV Core-core repulsion = 25933.462048 eV Total energy + Delta-G solvation = -3743.233393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63061 -38.94441 -36.70457 -35.69809 -34.00944 -31.90005 -31.46346 -30.98055 -29.90607 -27.32451 -26.60788 -25.94722 -25.46260 -24.36045 -23.02235 -21.42725 -20.85480 -19.80281 -18.63380 -17.53282 -16.73747 -16.25662 -15.91212 -15.22852 -15.13494 -15.01339 -14.69029 -14.56872 -14.27647 -14.04651 -13.81156 -13.41637 -13.15015 -13.06728 -12.63397 -12.48909 -12.10275 -11.99823 -11.94318 -11.72851 -11.59635 -11.49130 -11.31490 -11.23559 -11.07704 -10.88919 -10.74602 -10.61879 -10.51769 -10.38915 -10.14568 -9.90085 -9.79304 -9.74365 -8.87199 -8.61029 -8.38696 -8.26165 -6.60484 -5.67350 -3.13438 3.11376 3.38079 3.46221 3.47503 3.65912 3.82043 3.82648 4.53408 4.77579 4.84625 4.89051 5.06372 5.08931 5.19374 5.25316 5.26808 5.42341 5.46261 5.56165 5.57116 5.63758 5.67964 5.74016 5.82799 5.84765 5.87619 5.93824 6.01747 6.06051 6.15168 6.19889 6.31271 6.51048 6.52544 6.62107 6.73601 6.84541 6.87920 6.90060 6.97772 7.05738 7.32920 7.45403 7.82773 7.86848 8.28115 8.46411 8.88574 9.30526 9.94258 10.45700 11.36255 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.004939 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.824312 B = 5667.477708 C = 6270.156827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 H 0.082 0.918 4 C 0.137 3.863 5 N -0.597 5.597 6 C 0.168 3.832 7 C -0.250 4.250 8 H 0.065 0.935 9 C 0.003 3.997 10 N -0.905 5.905 11 Si 0.900 3.100 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 N -0.687 5.687 16 C 0.535 3.465 17 O -0.553 6.553 18 C 0.092 3.908 19 C -0.143 4.143 20 C -0.165 4.165 21 N -0.520 5.520 22 C 0.008 3.992 23 C 0.066 3.934 24 O -0.388 6.388 25 C 0.064 3.936 26 C 0.014 3.986 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.032 0.968 34 H -0.010 1.010 35 H 0.249 0.751 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -3.966 -11.952 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 H 0.100 0.900 4 C 0.008 3.992 5 N -0.319 5.319 6 C 0.023 3.977 7 C -0.380 4.380 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.550 5.550 11 Si 0.731 3.269 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 N -0.335 5.335 16 C 0.319 3.681 17 O -0.431 6.431 18 C 0.000 4.000 19 C -0.200 4.200 20 C -0.224 4.224 21 N -0.246 5.246 22 C -0.121 4.121 23 C -0.011 4.011 24 O -0.307 6.307 25 C -0.013 4.013 26 C -0.114 4.114 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.009 0.991 35 H 0.059 0.941 36 H 0.241 0.759 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.901 -3.968 -11.464 14.477 hybrid contribution 0.615 0.381 0.153 0.739 sum -7.286 -3.587 -11.312 13.925 Atomic orbital electron populations 1.22220 0.96628 1.03384 1.00424 1.21818 0.92208 0.97023 0.87502 0.89999 1.21252 0.85345 0.98799 0.93755 1.43848 0.99153 1.17692 1.71194 1.20898 0.93026 0.85112 0.98663 1.19236 0.96641 1.05328 1.16795 0.91718 1.25006 0.98816 0.98790 0.96894 1.70045 1.15509 1.43794 1.25673 0.86247 0.80441 0.81208 0.78992 1.20510 1.21843 1.21902 1.45762 1.50451 1.12259 1.25042 1.19911 0.80688 0.82079 0.85405 1.90587 1.35256 1.67887 1.49402 1.21329 0.97272 0.91540 0.89908 1.22006 0.94660 1.01929 1.01399 1.22240 0.99084 0.98974 1.02069 1.62416 1.24057 1.31400 1.06711 1.22939 0.91394 0.98150 0.99571 1.22641 0.98193 0.93908 0.86345 1.87952 1.36861 1.71131 1.34739 1.22676 0.86366 0.95127 0.97150 1.22874 1.00830 0.96495 0.91177 0.94058 0.90459 0.92635 0.93843 0.92429 0.94277 0.94889 0.99131 0.94066 0.75895 0.91521 0.92127 0.89238 0.92466 0.92200 0.90723 0.93550 0.89220 0.91975 0.88682 0.91925 0.88660 0.88860 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.09 37.16 0.34 -2.33 16 2 C 0.12 2.25 3.46 -67.93 -0.23 2.02 16 3 H 0.08 1.60 8.14 -51.92 -0.42 1.17 16 4 C 0.14 2.92 5.02 -4.04 -0.02 2.90 16 5 N -0.60 -14.74 2.80 -181.12 -0.51 -15.25 16 6 C 0.17 4.09 8.05 59.84 0.48 4.57 16 7 C -0.25 -6.71 9.66 -15.06 -0.15 -6.86 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.00 0.08 5.16 -17.43 -0.09 -0.01 16 10 N -0.90 -25.15 10.62 55.49 0.59 -24.56 16 11 Si 0.90 21.56 29.56 -169.99 -5.03 16.54 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 N -0.69 -12.05 3.78 -53.80 -0.20 -12.26 16 16 C 0.53 9.21 4.53 -10.99 -0.05 9.16 16 17 O -0.55 -10.87 12.34 5.56 0.07 -10.81 16 18 C 0.09 1.32 0.64 -132.76 -0.09 1.23 16 19 C -0.14 -2.10 7.86 37.16 0.29 -1.80 16 20 C -0.16 -2.15 7.32 37.16 0.27 -1.88 16 21 N -0.52 -6.66 3.76 -219.99 -0.83 -7.49 16 22 C 0.01 0.09 4.81 -3.71 -0.02 0.07 16 23 C 0.07 0.73 7.01 37.21 0.26 0.99 16 24 O -0.39 -4.70 10.83 -35.23 -0.38 -5.08 16 25 C 0.06 0.67 7.01 37.21 0.26 0.93 16 26 C 0.01 0.16 4.87 -3.71 -0.02 0.14 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.36 5.90 -51.93 -0.31 1.05 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.06 1.28 6.12 -51.93 -0.32 0.96 16 32 H 0.04 0.97 5.05 -51.93 -0.26 0.71 16 33 H 0.03 0.88 7.35 -51.93 -0.38 0.50 16 34 H -0.01 -0.23 7.80 -51.93 -0.40 -0.64 16 35 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.41 7.22 8.02 -40.82 -0.33 6.89 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.73 6.32 -51.93 -0.33 0.41 16 39 H 0.09 1.57 5.95 -51.93 -0.31 1.26 16 40 H 0.06 0.76 6.49 -51.93 -0.34 0.42 16 41 H 0.06 0.67 6.50 -51.92 -0.34 0.34 16 42 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 43 H 0.05 0.57 6.47 -51.93 -0.34 0.23 16 44 H 0.09 1.17 6.37 -51.93 -0.33 0.84 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 49 H 0.09 0.98 6.14 -51.93 -0.32 0.66 16 50 H 0.05 0.50 6.48 -51.93 -0.34 0.16 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -29.45 367.69 -7.89 -37.34 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.39 Total: 6.88 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 1.24 Total: 9.13 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.95 Total: -59.55 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.31 Total: -15.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.45 -7.89 -37.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754338264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds