Wall clock time and date at job start Fri Apr 10 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21279 * 120.00166 * 2 1 4 4 N 1.34784 * 120.00443 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99454 * 355.66220 * 4 2 1 6 6 C 1.46489 * 120.00241 * 175.65692 * 4 2 1 7 7 C 1.50704 * 109.46929 * 90.00427 * 6 4 2 8 8 O 1.21275 * 120.00274 * 359.97438 * 7 6 4 9 9 N 1.34784 * 119.99862 * 179.97438 * 7 6 4 10 10 C 1.46503 * 119.99739 * 185.28445 * 9 7 6 11 11 C 1.52997 * 109.49973 * 294.38462 * 10 9 7 12 12 O 1.42907 * 109.47129 * 305.84393 * 11 10 9 13 13 C 1.53044 * 109.49672 * 54.44929 * 10 9 7 14 14 C 1.53035 * 109.53620 * 58.64993 * 13 10 9 15 15 C 1.53193 * 109.34336 * 61.31926 * 14 13 10 16 16 N 1.46932 * 108.77128 * 305.37540 * 15 14 13 17 17 C 1.36932 * 120.63355 * 233.58502 * 16 15 14 18 18 H 1.07991 * 120.00272 * 160.38880 * 17 16 15 19 19 C 1.38819 * 119.99799 * 340.39218 * 17 16 15 20 20 N 1.31618 * 119.99973 * 329.11077 * 19 17 16 21 21 Si 1.86801 * 119.99866 * 149.10965 * 19 17 16 22 22 H 1.48500 * 109.46911 * 94.99608 * 21 19 17 23 23 H 1.48498 * 109.47078 * 214.99296 * 21 19 17 24 24 H 1.48500 * 109.47335 * 334.99271 * 21 19 17 25 25 C 1.46924 * 118.73595 * 53.61007 * 16 15 14 26 26 H 1.09005 * 109.47072 * 185.07407 * 1 2 3 27 27 H 1.08997 * 109.47594 * 305.07359 * 1 2 3 28 28 H 1.08998 * 109.46964 * 65.07368 * 1 2 3 29 29 H 1.09000 * 109.46981 * 275.06691 * 5 4 2 30 30 H 1.09003 * 109.47255 * 35.06985 * 5 4 2 31 31 H 1.09000 * 109.46961 * 155.07027 * 5 4 2 32 32 H 1.08997 * 109.47539 * 330.00342 * 6 4 2 33 33 H 1.09003 * 109.47562 * 210.00021 * 6 4 2 34 34 H 0.96996 * 120.00295 * 5.28744 * 9 7 6 35 35 H 1.08998 * 109.47455 * 185.84495 * 11 10 9 36 36 H 1.09001 * 109.47264 * 65.83796 * 11 10 9 37 37 H 0.96701 * 113.99996 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.45982 * 178.63691 * 13 10 9 39 39 H 1.08999 * 109.46099 * 298.59888 * 13 10 9 40 40 H 1.08997 * 109.47395 * 301.36210 * 14 13 10 41 41 H 1.09004 * 109.52126 * 181.30030 * 14 13 10 42 42 H 1.09001 * 109.58990 * 185.59283 * 15 14 13 43 43 H 1.08997 * 109.70414 * 65.23246 * 15 14 13 44 44 H 0.96999 * 119.99984 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.58335 * 186.60295 * 25 16 15 46 46 H 1.09006 * 109.58922 * 66.17834 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4516 -2.4341 0.0971 6 6 3.6427 -1.1690 -0.0955 7 6 4.2371 -1.1153 1.2883 8 8 3.5111 -1.0786 2.2591 9 7 5.5755 -1.1081 1.4470 10 6 6.1540 -1.1728 2.7914 11 6 5.7933 0.0973 3.5643 12 8 6.1932 1.2435 2.8103 13 6 5.5989 -2.3940 3.5281 14 6 5.9316 -3.6625 2.7391 15 6 7.4527 -3.8105 2.6343 16 7 8.0091 -2.5785 2.0584 17 6 8.8214 -2.6280 0.9572 18 1 8.9688 -1.7439 0.3547 19 6 9.4554 -3.8146 0.6151 20 7 9.8023 -4.6697 1.5536 21 14 9.8161 -4.1978 -1.1773 22 1 11.2019 -3.7761 -1.5044 23 1 9.6751 -5.6578 -1.4094 24 1 8.8580 -3.4642 -2.0429 25 6 7.6777 -1.2926 2.6870 26 1 -0.3633 -1.0237 0.0909 27 1 -0.3634 0.5905 0.8410 28 1 -0.3633 0.4331 -0.9319 29 1 1.2592 -2.6636 1.1451 30 1 0.5046 -2.3497 -0.4362 31 1 2.0482 -3.2315 -0.3460 32 1 3.9705 -0.2999 -0.6657 33 1 3.9728 -2.0785 -0.5976 34 1 6.1557 -1.0599 0.6711 35 1 6.3083 0.0967 4.5250 36 1 4.7164 0.1287 3.7294 37 1 5.9953 2.0864 3.2411 38 1 6.0480 -2.4553 4.5193 39 1 4.5174 -2.2992 3.6248 40 1 5.5032 -3.5914 1.7394 41 1 5.5162 -4.5299 3.2521 42 1 7.6941 -4.6562 1.9904 43 1 7.8753 -3.9738 3.6257 44 1 10.2457 -5.4987 1.3146 45 1 8.0675 -0.4770 2.0780 46 1 8.1168 -1.2491 3.6838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754853089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:15 Heat of formation + Delta-G solvation = -108.968736 kcal Electronic energy + Delta-G solvation = -28506.193080 eV Core-core repulsion = 24624.154909 eV Total energy + Delta-G solvation = -3882.038171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63452 -40.61570 -38.82207 -37.43751 -36.44110 -35.44061 -33.93415 -32.39688 -32.08807 -31.02441 -28.68485 -27.30509 -26.89387 -26.61986 -23.96995 -22.84082 -21.91146 -20.23644 -20.13563 -18.68200 -18.40876 -18.16159 -18.04816 -17.32250 -16.80873 -16.42195 -16.28862 -16.13059 -15.81453 -15.23751 -15.07456 -14.71770 -14.60331 -14.38746 -14.22592 -14.05731 -13.90735 -13.70372 -13.49414 -13.23204 -13.14777 -12.98395 -12.92425 -12.79584 -12.49250 -12.45709 -12.20146 -11.90190 -11.83085 -11.50962 -11.28016 -11.07094 -10.93423 -10.66217 -10.40817 -9.81294 -9.65801 -8.80764 -7.90611 -5.18143 1.48327 1.53148 1.53969 1.62018 1.75299 1.94516 2.49766 2.55073 3.21830 3.28859 3.62496 3.71293 3.77168 4.03570 4.09316 4.19753 4.24112 4.29695 4.32741 4.39620 4.44890 4.49271 4.57998 4.64213 4.71912 4.73260 4.83049 4.88456 4.94082 4.98050 5.04565 5.10921 5.16132 5.24454 5.35295 5.50856 5.63466 5.71770 5.76334 6.32675 6.36906 6.73344 6.86657 7.12337 7.14056 7.37637 7.85599 8.36825 9.17266 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.004591 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.910418 B = 6096.834622 C = 6838.921688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.503 3.497 3 O -0.600 6.600 4 N -0.599 5.599 5 C 0.073 3.927 6 C 0.094 3.906 7 C 0.501 3.499 8 O -0.569 6.569 9 N -0.689 5.689 10 C 0.173 3.827 11 C 0.078 3.922 12 O -0.578 6.578 13 C -0.113 4.113 14 C -0.117 4.117 15 C 0.173 3.827 16 N -0.598 5.598 17 C -0.262 4.262 18 H 0.072 0.928 19 C -0.042 4.042 20 N -0.923 5.923 21 Si 0.950 3.050 22 H -0.293 1.293 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.153 3.847 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.404 0.596 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.390 0.610 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.057 0.943 43 H -0.004 1.004 44 H 0.249 0.751 45 H 0.059 0.941 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.536 4.431 -1.843 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.294 3.706 3 O -0.481 6.481 4 N -0.331 5.331 5 C -0.069 4.069 6 C -0.033 4.033 7 C 0.287 3.713 8 O -0.449 6.449 9 N -0.339 5.339 10 C 0.084 3.916 11 C -0.002 4.002 12 O -0.385 6.385 13 C -0.152 4.152 14 C -0.156 4.156 15 C 0.048 3.952 16 N -0.321 5.321 17 C -0.392 4.392 18 H 0.090 0.910 19 C -0.238 4.238 20 N -0.569 5.569 21 Si 0.778 3.222 22 H -0.221 1.221 23 H -0.222 1.222 24 H -0.190 1.190 25 C 0.027 3.973 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.150 0.850 34 H 0.239 0.761 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.239 0.761 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -18.454 4.357 -1.594 19.029 hybrid contribution 1.078 0.019 -0.370 1.140 sum -17.376 4.376 -1.963 18.026 Atomic orbital electron populations 1.21989 0.87873 1.06664 1.05927 1.21726 0.92592 0.82404 0.73890 1.90690 1.72070 1.33094 1.52221 1.47655 1.05151 1.08111 1.72147 1.22151 0.98447 0.83620 1.02645 1.21370 0.81857 1.06262 0.93821 1.21384 0.82224 0.75182 0.92536 1.90542 1.60764 1.51528 1.42069 1.45737 1.06177 1.73020 1.08952 1.20788 0.94687 0.93262 0.82844 1.22457 0.98614 0.85426 0.93674 1.86456 1.85384 1.16830 1.49838 1.21681 1.01571 0.93558 0.98351 1.21848 0.97339 0.96878 0.99580 1.20663 0.89903 0.89474 0.95203 1.44327 1.54146 1.01101 1.32510 1.19420 1.21800 0.97153 1.00810 0.91049 1.25411 0.98623 0.99234 1.00541 1.70342 1.41957 1.12111 1.32462 0.85542 0.77642 0.76737 0.82246 1.22056 1.22167 1.19028 1.21071 0.91091 0.88668 0.96514 0.87186 0.88810 0.87177 0.92782 0.87316 0.89554 0.88048 0.84987 0.76130 0.92152 0.93364 0.76147 0.91611 0.90601 0.92964 0.91580 0.92488 0.98567 0.94156 0.92245 0.95577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.00 71.23 0.71 -1.65 16 2 C 0.50 12.92 7.77 87.65 0.68 13.60 16 3 O -0.60 -21.59 16.72 -3.03 -0.05 -21.64 16 4 N -0.60 -13.65 2.36 -851.15 -2.01 -15.66 16 5 C 0.07 1.03 10.01 127.77 1.28 2.31 16 6 C 0.09 2.43 5.90 85.64 0.51 2.93 16 7 C 0.50 16.25 7.07 87.66 0.62 16.87 16 8 O -0.57 -20.83 12.76 -3.02 -0.04 -20.87 16 9 N -0.69 -23.34 3.97 -422.56 -1.68 -25.02 16 10 C 0.17 6.05 0.45 3.68 0.00 6.05 16 11 C 0.08 2.46 5.72 71.98 0.41 2.87 16 12 O -0.58 -17.95 13.09 -148.98 -1.95 -19.90 16 13 C -0.11 -3.92 4.38 30.62 0.13 -3.78 16 14 C -0.12 -4.35 5.93 30.67 0.18 -4.17 16 15 C 0.17 8.01 5.50 86.36 0.47 8.48 16 16 N -0.60 -28.31 2.94 -699.08 -2.05 -30.36 16 17 C -0.26 -13.64 9.57 84.04 0.80 -12.84 16 18 H 0.07 3.63 7.94 -2.92 -0.02 3.61 16 19 C -0.04 -2.24 4.61 84.86 0.39 -1.84 16 20 N -0.92 -52.90 11.55 21.65 0.25 -52.65 16 21 Si 0.95 42.81 29.65 68.60 2.03 44.84 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 C 0.15 6.24 5.07 86.36 0.44 6.68 16 26 H 0.11 0.89 5.49 -2.38 -0.01 0.88 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 0.77 6.13 -2.39 -0.01 0.76 16 31 H 0.09 1.03 7.84 -2.39 -0.02 1.02 16 32 H 0.10 2.79 7.49 -2.39 -0.02 2.77 16 33 H 0.13 2.68 7.86 -2.39 -0.02 2.66 16 34 H 0.40 13.94 8.49 -92.71 -0.79 13.15 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.64 6.57 -2.39 -0.02 1.63 16 37 H 0.39 8.48 9.12 -74.06 -0.68 7.81 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.67 6.01 -2.39 -0.01 2.65 16 40 H 0.05 1.95 7.32 -2.39 -0.02 1.93 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.97 5.88 -2.39 -0.01 2.96 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.06 2.50 7.76 -2.39 -0.02 2.48 16 46 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -74.64 363.66 0.68 -73.96 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.45 Total: 31.81 kcal Atomic # 6 Polarization: 28.87 SS G_CDS: 6.64 Total: 35.50 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -5.49 Total: -123.70 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -2.04 Total: -62.42 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.64 0.68 -73.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754853089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.012 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds