Wall clock time and date at job start Fri Apr 10 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 120.00346 * 2 1 4 4 O 1.21284 * 119.99253 * 359.72663 * 3 2 1 5 5 C 1.50694 * 120.00217 * 179.72725 * 3 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.47126 * 179.97438 * 6 5 3 8 8 C 1.50694 * 109.46835 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00881 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99552 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.47256 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.67852 * 299.80719 * 12 11 10 14 14 C 1.53294 * 109.68322 * 179.24971 * 12 11 10 15 15 O 1.42959 * 109.22051 * 187.97571 * 14 12 11 16 16 C 1.42954 * 114.16811 * 62.58411 * 15 14 12 17 17 C 1.53291 * 109.22357 * 297.41534 * 16 15 14 18 18 N 1.47151 * 108.38505 * 52.30186 * 17 16 15 19 19 C 1.36938 * 120.98276 * 129.48471 * 18 17 16 20 20 H 1.07996 * 120.00367 * 229.92549 * 19 18 17 21 21 C 1.38811 * 119.99738 * 49.93129 * 19 18 17 22 22 N 1.31621 * 119.99584 * 188.85059 * 21 19 18 23 23 Si 1.86797 * 120.00210 * 8.84983 * 21 19 18 24 24 H 1.48501 * 109.47034 * 84.32791 * 23 21 19 25 25 H 1.48503 * 109.47351 * 204.32568 * 23 21 19 26 26 H 1.48501 * 109.47142 * 324.33080 * 23 21 19 27 27 H 1.09004 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46813 * 299.99899 * 1 2 3 29 29 H 1.08995 * 109.47295 * 60.00007 * 1 2 3 30 30 H 0.97005 * 120.00419 * 179.72667 * 2 1 3 31 31 H 1.08992 * 109.47301 * 299.99909 * 5 3 2 32 32 H 1.08999 * 109.46957 * 60.00261 * 5 3 2 33 33 H 1.09001 * 109.47126 * 299.99945 * 6 5 3 34 34 H 1.08994 * 109.47280 * 60.00033 * 6 5 3 35 35 H 1.08992 * 109.46963 * 300.00582 * 7 6 5 36 36 H 1.09004 * 109.46532 * 59.99939 * 7 6 5 37 37 H 0.97004 * 120.00231 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47027 * 299.99962 * 11 10 8 39 39 H 1.08999 * 109.46991 * 60.00338 * 11 10 8 40 40 H 1.09002 * 109.51093 * 307.90272 * 14 12 11 41 41 H 1.09002 * 109.51137 * 68.04776 * 14 12 11 42 42 H 1.09004 * 109.51640 * 177.49309 * 16 15 14 43 43 H 1.08996 * 109.55523 * 57.36295 * 16 15 14 44 44 H 1.09004 * 109.68639 * 292.58537 * 17 16 15 45 45 H 1.09000 * 109.68503 * 172.02625 * 17 16 15 46 46 H 0.97004 * 119.99315 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 -0.0050 5 6 3.6459 1.1672 0.0062 6 6 4.1559 2.6097 0.0042 7 6 5.6859 2.6097 0.0112 8 6 6.1882 4.0305 0.0086 9 8 5.4002 4.9523 0.0023 10 7 7.5132 4.2768 0.0143 11 6 8.0016 5.6580 0.0124 12 6 9.5316 5.6580 0.0205 13 1 9.8940 5.1508 0.9147 14 6 10.0480 7.1012 -0.0004 15 8 11.4663 7.0910 -0.1801 16 6 11.8952 6.5220 -1.4193 17 6 11.4734 5.0491 -1.4712 18 7 10.0336 4.9681 -1.1785 19 6 9.1859 4.2709 -1.9974 20 1 8.2762 4.7326 -2.3518 21 6 9.4959 2.9707 -2.3719 22 7 8.7782 2.3622 -3.2922 23 14 10.9315 2.0848 -1.5698 24 1 10.4848 1.4739 -0.2920 25 1 11.4279 1.0214 -2.4798 26 1 12.0232 3.0546 -1.2997 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.9501 -0.8400 0.0040 31 1 4.0055 0.6555 0.8988 32 1 4.0128 0.6513 -0.8811 33 1 3.7962 3.1210 -0.8887 34 1 3.7889 3.1260 0.8912 35 1 6.0452 2.0985 0.9042 36 1 6.0532 2.0932 -0.8757 37 1 8.1436 3.5395 0.0197 38 1 7.6426 6.1690 -0.8810 39 1 7.6339 6.1746 0.8990 40 1 9.5807 7.6432 -0.8226 41 1 9.8040 7.5889 0.9434 42 1 12.9802 6.5928 -1.4964 43 1 11.4353 7.0616 -2.2471 44 1 12.0317 4.4809 -0.7271 45 1 11.6693 4.6459 -2.4647 46 1 8.9951 1.4537 -3.5541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754965209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:21 Heat of formation + Delta-G solvation = -95.845736 kcal Electronic energy + Delta-G solvation = -26917.184116 eV Core-core repulsion = 23035.715001 eV Total energy + Delta-G solvation = -3881.469115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74374 -39.22449 -38.41914 -35.45002 -34.73763 -33.97646 -33.45291 -31.80247 -31.02754 -29.11305 -27.53593 -26.56090 -25.10086 -23.34886 -22.51748 -21.67421 -20.34325 -20.00125 -19.40916 -17.45652 -16.86048 -16.19552 -16.07115 -15.95877 -15.78492 -15.66593 -15.13276 -14.85049 -14.68974 -14.38588 -14.04812 -13.80601 -13.69910 -13.29978 -12.84405 -12.77783 -12.65032 -12.49732 -12.16433 -11.94157 -11.76253 -11.64473 -11.38374 -11.16863 -10.93940 -10.80411 -10.76735 -10.48216 -10.26422 -9.91204 -9.89571 -9.59812 -9.31284 -9.27458 -9.01142 -8.60463 -8.14051 -6.73050 -6.11878 -3.76085 2.62971 3.10800 3.20289 3.33679 3.36281 3.40961 3.96828 4.33654 4.37539 4.69253 4.72899 4.98730 5.11181 5.13604 5.14963 5.30516 5.39658 5.50255 5.57412 5.59747 5.63491 5.68629 5.72739 5.82878 5.88349 5.93404 5.94912 6.03335 6.14539 6.18128 6.23431 6.32853 6.42515 6.44417 6.63184 6.66339 6.78992 7.27715 7.33640 7.62733 7.93174 8.17292 8.30814 8.38773 8.77045 9.03548 9.49661 9.97612 11.00221 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.003210 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.423985 B = 8719.623743 C = 9811.096743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.743 5.743 3 C 0.511 3.489 4 O -0.534 6.534 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.141 4.141 8 C 0.513 3.487 9 O -0.565 6.565 10 N -0.692 5.692 11 C 0.141 3.859 12 C 0.123 3.877 13 H 0.044 0.956 14 C 0.055 3.945 15 O -0.390 6.390 16 C 0.042 3.958 17 C 0.102 3.898 18 N -0.606 5.606 19 C -0.266 4.266 20 H 0.079 0.921 21 C 0.045 3.955 22 N -0.899 5.899 23 Si 0.848 3.152 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.237 1.237 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.401 0.599 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.409 0.591 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 -5.269 7.579 10.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.396 5.396 3 C 0.298 3.702 4 O -0.409 6.409 5 C -0.181 4.181 6 C -0.123 4.123 7 C -0.181 4.181 8 C 0.299 3.701 9 O -0.445 6.445 10 N -0.342 5.342 11 C 0.016 3.984 12 C 0.017 3.983 13 H 0.062 0.938 14 C -0.024 4.024 15 O -0.308 6.308 16 C -0.036 4.036 17 C -0.023 4.023 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.096 0.904 21 C -0.157 4.157 22 N -0.539 5.539 23 Si 0.677 3.323 24 H -0.211 1.211 25 H -0.226 1.226 26 H -0.162 1.162 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.235 0.765 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.246 0.754 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.790 -3.932 7.582 10.319 hybrid contribution 1.150 -1.757 -0.066 2.101 sum -4.640 -5.689 7.517 10.507 Atomic orbital electron populations 1.21501 0.80028 1.01903 1.02283 1.45886 1.07645 1.08950 1.77091 1.20923 0.90693 0.83364 0.75270 1.90731 1.70589 1.31279 1.48336 1.21727 0.91056 1.00858 1.04501 1.21023 0.93020 0.93463 1.04764 1.21625 0.96727 0.95301 1.04442 1.20413 0.82456 0.91128 0.76102 1.90640 1.55692 1.46553 1.51626 1.45870 1.06596 1.09024 1.72747 1.21033 0.92547 0.83968 1.00857 1.21568 0.92593 0.93001 0.91117 0.93834 1.22899 0.81770 0.96710 1.01011 1.87817 1.21931 1.82029 1.39050 1.23142 0.98651 0.95806 0.85973 1.22366 0.86217 0.93519 1.00172 1.44367 1.03255 1.60960 1.24755 1.18683 1.04438 0.93237 1.23091 0.90377 1.25758 0.96827 0.96186 0.96901 1.69802 1.40221 1.13482 1.30394 0.87631 0.85251 0.80286 0.79166 1.21134 1.22613 1.16155 0.90896 0.92413 0.92302 0.76519 0.88919 0.88498 0.90443 0.90868 0.89778 0.88135 0.75368 0.91529 0.92506 0.93074 0.89530 0.90001 0.93371 0.94046 0.90842 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.85 0.64 1.34 16 2 N -0.74 -6.72 5.71 -67.08 -0.38 -7.10 16 3 C 0.51 6.59 7.83 -10.99 -0.09 6.50 16 4 O -0.53 -9.40 15.98 5.55 0.09 -9.31 16 5 C -0.14 -1.59 5.70 -27.89 -0.16 -1.75 16 6 C -0.08 -1.29 3.79 -26.73 -0.10 -1.39 16 7 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 8 C 0.51 10.05 7.83 -10.99 -0.09 9.97 16 9 O -0.56 -12.83 15.98 5.56 0.09 -12.74 16 10 N -0.69 -13.38 4.09 -60.29 -0.25 -13.63 16 11 C 0.14 2.62 4.51 -4.04 -0.02 2.60 16 12 C 0.12 2.27 3.21 -67.42 -0.22 2.05 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.05 0.91 6.29 37.31 0.23 1.14 16 15 O -0.39 -6.92 10.74 -35.23 -0.38 -7.30 16 16 C 0.04 0.72 6.98 37.31 0.26 0.98 16 17 C 0.10 2.01 4.26 -3.54 -0.02 1.99 16 18 N -0.61 -12.82 2.45 -164.30 -0.40 -13.22 16 19 C -0.27 -6.49 6.61 -15.06 -0.10 -6.59 16 20 H 0.08 2.20 7.12 -52.49 -0.37 1.83 16 21 C 0.05 1.15 5.33 -17.43 -0.09 1.05 16 22 N -0.90 -24.59 13.97 55.49 0.78 -23.82 16 23 Si 0.85 18.89 26.73 -169.99 -4.54 14.35 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.24 -4.91 3.87 56.52 0.22 -4.69 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.40 2.31 8.83 -40.82 -0.36 1.95 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 34 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.41 8.09 7.25 -40.82 -0.30 7.80 16 38 H 0.07 1.39 7.60 -51.93 -0.39 1.00 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.83 6.13 -51.93 -0.32 0.51 16 45 H 0.07 1.51 6.85 -51.93 -0.36 1.15 16 46 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -32.98 366.53 -7.12 -40.11 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.75 Total: 11.60 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 0.10 Total: 15.54 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.26 Total: -57.77 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.20 Total: -29.34 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.54 Total: 14.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.98 -7.12 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754965209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.739 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds