Wall clock time and date at job start Fri Apr 10 2020 18:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 120.00346 * 2 1 4 4 O 1.21284 * 119.99253 * 359.72663 * 3 2 1 5 5 C 1.50694 * 120.00217 * 179.72725 * 3 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.47126 * 179.97438 * 6 5 3 8 8 C 1.50694 * 109.46835 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00881 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99552 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.47256 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.67852 * 299.80719 * 12 11 10 14 14 C 1.53294 * 109.68322 * 179.24971 * 12 11 10 15 15 O 1.42959 * 109.22051 * 187.97571 * 14 12 11 16 16 C 1.42954 * 114.16811 * 62.58411 * 15 14 12 17 17 C 1.53291 * 109.22357 * 297.41534 * 16 15 14 18 18 N 1.47151 * 108.38505 * 52.30186 * 17 16 15 19 19 C 1.36938 * 120.98276 * 129.48471 * 18 17 16 20 20 H 1.07996 * 120.00367 * 229.92549 * 19 18 17 21 21 C 1.38811 * 119.99738 * 49.93129 * 19 18 17 22 22 N 1.31621 * 119.99584 * 188.85059 * 21 19 18 23 23 Si 1.86797 * 120.00210 * 8.84983 * 21 19 18 24 24 H 1.48501 * 109.47034 * 84.32791 * 23 21 19 25 25 H 1.48503 * 109.47351 * 204.32568 * 23 21 19 26 26 H 1.48501 * 109.47142 * 324.33080 * 23 21 19 27 27 H 1.09004 * 109.47297 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46813 * 299.99899 * 1 2 3 29 29 H 1.08995 * 109.47295 * 60.00007 * 1 2 3 30 30 H 0.97005 * 120.00419 * 179.72667 * 2 1 3 31 31 H 1.08992 * 109.47301 * 299.99909 * 5 3 2 32 32 H 1.08999 * 109.46957 * 60.00261 * 5 3 2 33 33 H 1.09001 * 109.47126 * 299.99945 * 6 5 3 34 34 H 1.08994 * 109.47280 * 60.00033 * 6 5 3 35 35 H 1.08992 * 109.46963 * 300.00582 * 7 6 5 36 36 H 1.09004 * 109.46532 * 59.99939 * 7 6 5 37 37 H 0.97004 * 120.00231 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47027 * 299.99962 * 11 10 8 39 39 H 1.08999 * 109.46991 * 60.00338 * 11 10 8 40 40 H 1.09002 * 109.51093 * 307.90272 * 14 12 11 41 41 H 1.09002 * 109.51137 * 68.04776 * 14 12 11 42 42 H 1.09004 * 109.51640 * 177.49309 * 16 15 14 43 43 H 1.08996 * 109.55523 * 57.36295 * 16 15 14 44 44 H 1.09004 * 109.68639 * 292.58537 * 17 16 15 45 45 H 1.09000 * 109.68503 * 172.02625 * 17 16 15 46 46 H 0.97004 * 119.99315 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 -0.0050 5 6 3.6459 1.1672 0.0062 6 6 4.1559 2.6097 0.0042 7 6 5.6859 2.6097 0.0112 8 6 6.1882 4.0305 0.0086 9 8 5.4002 4.9523 0.0023 10 7 7.5132 4.2768 0.0143 11 6 8.0016 5.6580 0.0124 12 6 9.5316 5.6580 0.0205 13 1 9.8940 5.1508 0.9147 14 6 10.0480 7.1012 -0.0004 15 8 11.4663 7.0910 -0.1801 16 6 11.8952 6.5220 -1.4193 17 6 11.4734 5.0491 -1.4712 18 7 10.0336 4.9681 -1.1785 19 6 9.1859 4.2709 -1.9974 20 1 8.2762 4.7326 -2.3518 21 6 9.4959 2.9707 -2.3719 22 7 8.7782 2.3622 -3.2922 23 14 10.9315 2.0848 -1.5698 24 1 10.4848 1.4739 -0.2920 25 1 11.4279 1.0214 -2.4798 26 1 12.0232 3.0546 -1.2997 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.9501 -0.8400 0.0040 31 1 4.0055 0.6555 0.8988 32 1 4.0128 0.6513 -0.8811 33 1 3.7962 3.1210 -0.8887 34 1 3.7889 3.1260 0.8912 35 1 6.0452 2.0985 0.9042 36 1 6.0532 2.0932 -0.8757 37 1 8.1436 3.5395 0.0197 38 1 7.6426 6.1690 -0.8810 39 1 7.6339 6.1746 0.8990 40 1 9.5807 7.6432 -0.8226 41 1 9.8040 7.5889 0.9434 42 1 12.9802 6.5928 -1.4964 43 1 11.4353 7.0616 -2.2471 44 1 12.0317 4.4809 -0.7271 45 1 11.6693 4.6459 -2.4647 46 1 8.9951 1.4537 -3.5541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754965209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:20 Heat of formation + Delta-G solvation = -122.309177 kcal Electronic energy + Delta-G solvation = -26918.331657 eV Core-core repulsion = 23035.715001 eV Total energy + Delta-G solvation = -3882.616656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95121 -40.60322 -39.91740 -36.99845 -35.66598 -35.29047 -35.06509 -33.62287 -32.54755 -30.24102 -29.16135 -27.61734 -26.39030 -25.07105 -23.89720 -22.97712 -21.62118 -21.32602 -20.94011 -18.84236 -18.28518 -17.65878 -17.52959 -17.23644 -17.06972 -16.73958 -16.61714 -16.34846 -16.03103 -15.90951 -15.56790 -15.09237 -14.88134 -14.66066 -14.48834 -14.23388 -13.98239 -13.67663 -13.46891 -13.19222 -13.10018 -12.85426 -12.71937 -12.69634 -12.40290 -12.38057 -12.25151 -12.04878 -11.72574 -11.35393 -11.31933 -11.04196 -10.90301 -10.61646 -10.38038 -10.12760 -9.78445 -8.47650 -8.07897 -5.72229 1.44459 1.53795 1.58822 1.64111 1.82740 2.24955 2.51138 2.55237 2.96522 3.14193 3.23840 3.75494 3.91599 4.02082 4.06621 4.14408 4.19993 4.26097 4.41178 4.43514 4.47319 4.55043 4.59412 4.60707 4.64091 4.68733 4.71467 4.75400 4.81470 4.87281 4.94612 4.98290 5.07395 5.18593 5.27407 5.35299 5.48379 5.71088 6.01444 6.24958 6.33477 6.57007 6.79476 6.96345 7.29246 7.45670 7.58109 8.10109 9.07181 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.003210 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.423985 B = 8719.623743 C = 9811.096743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.504 3.496 4 O -0.593 6.593 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.130 4.130 8 C 0.502 3.498 9 O -0.603 6.603 10 N -0.691 5.691 11 C 0.143 3.857 12 C 0.126 3.874 13 H 0.058 0.942 14 C 0.058 3.942 15 O -0.392 6.392 16 C 0.048 3.952 17 C 0.097 3.903 18 N -0.617 5.617 19 C -0.243 4.243 20 H 0.029 0.971 21 C 0.004 3.996 22 N -0.945 5.945 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.316 1.316 26 H -0.210 1.210 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.421 0.579 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.409 0.591 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.042 0.958 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -6.681 9.652 12.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.377 5.377 3 C 0.292 3.708 4 O -0.473 6.473 5 C -0.171 4.171 6 C -0.116 4.116 7 C -0.170 4.170 8 C 0.290 3.710 9 O -0.486 6.486 10 N -0.340 5.340 11 C 0.018 3.982 12 C 0.020 3.980 13 H 0.076 0.924 14 C -0.021 4.021 15 O -0.310 6.310 16 C -0.030 4.030 17 C -0.027 4.027 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.047 0.953 21 C -0.194 4.194 22 N -0.588 5.588 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.244 1.244 26 H -0.134 1.134 27 H 0.132 0.868 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.258 0.742 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.246 0.754 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.876 -5.372 9.682 11.731 hybrid contribution 0.506 -1.249 -0.753 1.543 sum -3.370 -6.620 8.929 11.615 Atomic orbital electron populations 1.21653 0.79240 1.04184 1.01107 1.45772 1.08271 1.08716 1.74984 1.21250 0.91442 0.83508 0.74615 1.90712 1.71696 1.33510 1.51400 1.21680 0.89961 0.98241 1.07233 1.20868 0.92754 0.95971 1.02007 1.21618 0.96695 0.92732 1.05926 1.21177 0.82203 0.92535 0.75091 1.90617 1.56501 1.48131 1.53353 1.45911 1.06626 1.09227 1.72254 1.21029 0.93170 0.83730 1.00230 1.21684 0.91936 0.94131 0.90233 0.92391 1.22961 0.81283 0.95301 1.02516 1.87830 1.22225 1.81819 1.39117 1.23128 1.00544 0.93567 0.85741 1.22421 0.85007 0.95628 0.99667 1.44445 1.03697 1.60968 1.25376 1.18218 1.03199 0.93123 1.22721 0.95327 1.26238 0.99273 0.96696 0.97210 1.69946 1.42579 1.13795 1.32476 0.86756 0.83221 0.79031 0.77918 1.20381 1.24386 1.13351 0.86820 0.93378 0.93809 0.74198 0.85044 0.86628 0.94432 0.92552 0.85838 0.88654 0.75446 0.94747 0.90461 0.93884 0.86215 0.86736 0.93979 0.93247 0.92058 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.70 127.77 1.37 2.58 16 2 N -0.72 -11.84 5.71 -484.52 -2.77 -14.60 16 3 C 0.50 12.79 7.83 87.65 0.69 13.48 16 4 O -0.59 -21.77 15.98 -3.04 -0.05 -21.82 16 5 C -0.13 -2.76 5.70 29.85 0.17 -2.59 16 6 C -0.08 -2.42 3.79 30.60 0.12 -2.31 16 7 C -0.13 -4.03 5.70 29.85 0.17 -3.86 16 8 C 0.50 20.16 7.83 87.66 0.69 20.85 16 9 O -0.60 -28.64 15.98 -3.02 -0.05 -28.68 16 10 N -0.69 -26.89 4.09 -463.05 -1.90 -28.79 16 11 C 0.14 5.35 4.51 86.38 0.39 5.74 16 12 C 0.13 4.40 3.21 44.97 0.14 4.55 16 13 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 14 C 0.06 1.77 6.29 72.08 0.45 2.22 16 15 O -0.39 -12.57 10.74 -148.98 -1.60 -14.17 16 16 C 0.05 1.50 6.98 72.08 0.50 2.00 16 17 C 0.10 3.58 4.26 86.35 0.37 3.95 16 18 N -0.62 -25.45 2.45 -673.71 -1.65 -27.10 16 19 C -0.24 -12.05 6.61 84.03 0.56 -11.49 16 20 H 0.03 1.72 7.12 -2.91 -0.02 1.70 16 21 C 0.00 0.20 5.33 84.86 0.45 0.65 16 22 N -0.95 -52.98 13.97 21.65 0.30 -52.67 16 23 Si 0.90 38.17 26.73 68.60 1.83 40.01 16 24 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.32 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.21 -7.89 3.87 99.48 0.39 -7.51 16 27 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.42 3.55 8.83 -92.70 -0.82 2.73 16 31 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 34 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 35 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 37 H 0.41 15.94 7.25 -92.71 -0.67 15.27 16 38 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.78 6.13 -2.39 -0.01 1.77 16 45 H 0.06 2.40 6.85 -2.39 -0.02 2.39 16 46 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -76.24 366.53 -0.63 -76.87 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.82 Total: 35.20 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: 6.06 Total: 35.77 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -6.01 Total: -123.16 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -1.70 Total: -64.68 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.83 Total: 40.01 kcal Total: -76.24 -0.63 -76.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754965209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.436 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds