Wall clock time and date at job start Fri Apr 10 2020 18:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00300 * 2 1 4 4 O 1.21284 * 119.99911 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00250 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47069 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46982 * 180.02562 * 6 5 3 8 8 C 1.50705 * 109.46995 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99937 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99787 * 180.02562 * 8 7 6 11 11 C 1.47156 * 120.98466 * 359.97438 * 10 8 7 12 12 C 1.53296 * 108.38233 * 230.26449 * 11 10 8 13 13 O 1.42957 * 109.22402 * 307.69209 * 12 11 10 14 14 C 1.42962 * 114.16142 * 62.58700 * 13 12 11 15 15 H 1.09006 * 109.51718 * 57.39263 * 14 13 12 16 16 C 1.53000 * 109.50919 * 177.49389 * 14 13 12 17 17 N 1.46500 * 109.47044 * 299.99567 * 16 14 13 18 18 C 1.36944 * 120.00202 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99596 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00113 * 180.02562 * 18 17 16 21 21 N 1.31612 * 120.00107 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47006 * 90.00047 * 22 20 18 24 24 H 1.48496 * 109.46886 * 210.00093 * 22 20 18 25 25 H 1.48501 * 109.47188 * 329.99936 * 22 20 18 26 26 C 1.47151 * 120.98286 * 179.71529 * 10 8 7 27 27 H 1.08998 * 109.46873 * 59.99844 * 1 2 3 28 28 H 1.08998 * 109.47413 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47164 * 300.00166 * 1 2 3 30 30 H 0.96997 * 120.00177 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47186 * 59.99851 * 5 3 2 32 32 H 1.08998 * 109.47333 * 299.99827 * 5 3 2 33 33 H 1.09002 * 109.47499 * 60.00253 * 6 5 3 34 34 H 1.09007 * 109.47437 * 299.99699 * 6 5 3 35 35 H 1.09002 * 109.47341 * 60.00069 * 7 6 5 36 36 H 1.09001 * 109.46422 * 299.99664 * 7 6 5 37 37 H 1.09002 * 109.67563 * 349.98862 * 11 10 8 38 38 H 1.08998 * 109.67968 * 110.50341 * 11 10 8 39 39 H 1.09004 * 109.51110 * 67.62426 * 12 11 10 40 40 H 1.09002 * 109.50509 * 187.76878 * 12 11 10 41 41 H 1.08999 * 109.47479 * 59.99627 * 16 14 13 42 42 H 1.09003 * 109.47110 * 179.97438 * 16 14 13 43 43 H 0.97000 * 120.00243 * 0.02562 * 17 16 14 44 44 H 0.97002 * 120.00152 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.68184 * 249.46000 * 26 10 8 46 46 H 1.09003 * 109.67897 * 10.00956 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6096 -0.0002 7 6 5.6860 2.6096 -0.0002 8 6 6.1883 4.0305 -0.0004 9 8 5.4002 4.9523 -0.0009 10 7 7.5133 4.2767 -0.0009 11 6 8.4886 3.1747 -0.0009 12 6 9.5058 3.4295 1.1173 13 8 10.0386 4.7487 0.9775 14 6 9.0673 5.7892 1.1108 15 1 8.5741 5.7051 2.0792 16 6 9.7586 7.1500 1.0057 17 7 10.7561 7.2745 2.0714 18 6 11.5056 8.4157 2.1779 19 1 11.3616 9.2238 1.4759 20 6 12.4512 8.5334 3.1873 21 7 12.6277 7.5481 4.0418 22 14 13.4730 10.0904 3.3329 23 1 12.7746 11.0602 4.2143 24 1 14.7991 9.7596 3.9135 25 1 13.6576 10.6890 1.9865 26 6 8.0276 5.6554 -0.0073 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 4.0096 0.6531 -0.8891 32 1 4.0089 0.6536 0.8908 33 1 3.7923 3.1241 0.8893 34 1 3.7930 3.1229 -0.8907 35 1 6.0493 2.0953 -0.8900 36 1 6.0492 2.0963 0.8901 37 1 7.9751 2.2301 0.1781 38 1 9.0007 3.1378 -0.9624 39 1 9.0136 3.3362 2.0854 40 1 10.3138 2.7012 1.0472 41 1 10.2500 7.2342 0.0365 42 1 9.0174 7.9429 1.1070 43 1 10.8863 6.5483 2.7012 44 1 13.2882 7.6305 4.7474 45 1 8.4937 5.8689 -0.9692 46 1 7.2088 6.3534 0.1673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755000829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:27 Heat of formation + Delta-G solvation = -139.525690 kcal Electronic energy + Delta-G solvation = -25776.989131 eV Core-core repulsion = 21893.625911 eV Total energy + Delta-G solvation = -3883.363220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45935 -40.65167 -39.54195 -36.66205 -35.72393 -35.66800 -35.27877 -33.90601 -31.95536 -30.36517 -29.18116 -27.73397 -26.62217 -24.93322 -24.09071 -23.10019 -22.13405 -21.29983 -20.09659 -19.24795 -18.48647 -17.98166 -17.64023 -17.22197 -17.01591 -16.77142 -16.51183 -16.48189 -15.97790 -15.85977 -15.20260 -15.14194 -15.01316 -14.64840 -14.35338 -14.20970 -14.04440 -13.74430 -13.47747 -13.19226 -13.06707 -12.82053 -12.79080 -12.74183 -12.61183 -12.33979 -12.24526 -12.04245 -11.87786 -11.71806 -11.61000 -11.17645 -11.00070 -10.95721 -10.76184 -10.11326 -9.60353 -9.01452 -7.94427 -5.24085 1.47441 1.50100 1.58092 1.58879 1.67799 1.82104 2.37155 2.56351 2.78060 3.39136 3.45992 3.59221 3.78907 3.91412 3.98404 4.05440 4.07384 4.11214 4.19398 4.36414 4.41002 4.43754 4.49647 4.57409 4.63145 4.64459 4.66005 4.69763 4.77260 4.82000 4.91805 4.95181 4.97691 5.08353 5.16932 5.29063 5.39395 5.47725 5.50588 6.24511 6.28452 6.35069 6.60679 7.11554 7.33203 7.33357 8.06768 8.32382 9.29209 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.001990 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.127474 B =14065.811522 C =14302.765331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.724 5.724 3 C 0.497 3.503 4 O -0.598 6.598 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.126 4.126 8 C 0.504 3.496 9 O -0.592 6.592 10 N -0.617 5.617 11 C 0.076 3.924 12 C 0.033 3.967 13 O -0.389 6.389 14 C 0.090 3.910 15 H 0.046 0.954 16 C 0.159 3.841 17 N -0.739 5.739 18 C -0.250 4.250 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.978 3.022 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.093 3.907 27 H 0.044 0.956 28 H 0.112 0.888 29 H 0.042 0.958 30 H 0.422 0.578 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.129 0.871 41 H 0.030 0.970 42 H 0.039 0.961 43 H 0.376 0.624 44 H 0.252 0.748 45 H 0.084 0.916 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 -25.930 -11.307 33.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.377 5.377 3 C 0.286 3.714 4 O -0.479 6.479 5 C -0.167 4.167 6 C -0.127 4.127 7 C -0.165 4.165 8 C 0.295 3.705 9 O -0.472 6.472 10 N -0.351 5.351 11 C -0.046 4.046 12 C -0.043 4.043 13 O -0.308 6.308 14 C 0.031 3.969 15 H 0.064 0.936 16 C 0.032 3.968 17 N -0.382 5.382 18 C -0.382 4.382 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.807 3.193 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.194 1.194 26 C -0.031 4.031 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.259 0.741 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.147 0.853 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.208 0.792 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.706 -24.538 -11.418 32.900 hybrid contribution 0.456 0.764 0.695 1.129 sum -18.251 -23.775 -10.722 31.832 Atomic orbital electron populations 1.21621 0.79690 1.04066 1.00924 1.45778 1.08045 1.08951 1.74944 1.21511 0.92052 0.83301 0.74579 1.90740 1.71968 1.33673 1.51502 1.21687 0.89088 0.98027 1.07870 1.20972 0.93578 0.96162 1.02003 1.21778 0.95999 0.91016 1.07737 1.21695 0.80925 0.93501 0.74396 1.90715 1.55885 1.48714 1.51869 1.48345 1.06244 1.07229 1.73252 1.22756 0.90572 0.90646 1.00594 1.23292 0.98754 0.84496 0.97797 1.88100 1.34607 1.15058 1.93017 1.22394 0.89091 0.88451 0.96935 0.93627 1.20773 0.91222 0.92807 0.92026 1.42381 1.43288 1.18387 1.34109 1.19680 1.13169 0.94986 1.10354 0.90512 1.25618 1.01577 1.01368 0.98221 1.69838 1.38513 1.33786 1.19749 0.85076 0.77570 0.78790 0.77907 1.21371 1.21938 1.19376 1.22005 0.96937 0.84900 0.99249 0.93742 0.86973 0.93889 0.74053 0.84904 0.85220 0.94069 0.93631 0.84666 0.85267 0.84199 0.89046 0.93060 0.85340 0.95186 0.94336 0.79227 0.93965 0.89795 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.70 127.77 1.37 2.10 16 2 N -0.72 -6.09 5.71 -484.53 -2.77 -8.85 16 3 C 0.50 8.01 7.83 87.66 0.69 8.70 16 4 O -0.60 -17.31 15.98 -3.04 -0.05 -17.36 16 5 C -0.13 -0.99 5.70 29.85 0.17 -0.82 16 6 C -0.09 -1.53 3.79 30.60 0.12 -1.42 16 7 C -0.13 -1.49 4.07 29.85 0.12 -1.36 16 8 C 0.50 12.25 7.71 87.66 0.68 12.93 16 9 O -0.59 -21.00 15.45 -3.04 -0.05 -21.05 16 10 N -0.62 -14.29 3.02 -817.41 -2.47 -16.76 16 11 C 0.08 1.11 6.54 86.35 0.56 1.68 16 12 C 0.03 0.72 6.98 72.08 0.50 1.22 16 13 O -0.39 -13.37 10.13 -148.98 -1.51 -14.88 16 14 C 0.09 3.19 2.86 30.68 0.09 3.28 16 15 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 16 C 0.16 6.81 5.96 86.38 0.51 7.33 16 17 N -0.74 -40.00 5.50 -343.44 -1.89 -41.89 16 18 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 20 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 21 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 22 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.09 2.75 5.92 86.34 0.51 3.26 16 27 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.42 -0.04 8.83 -92.71 -0.82 -0.86 16 31 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 34 H 0.04 1.08 8.06 -2.38 -0.02 1.06 16 35 H 0.14 0.58 8.02 -2.39 -0.02 0.56 16 36 H 0.13 0.71 7.65 -2.39 -0.02 0.70 16 37 H 0.14 0.70 6.06 -2.39 -0.01 0.68 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.38 21.75 7.54 -92.71 -0.70 21.05 16 44 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.08 2.78 7.08 -2.39 -0.02 2.76 16 Total: -1.00 -92.30 378.44 -0.32 -92.63 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.53 Total: 20.39 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 6.63 Total: 19.09 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -6.84 Total: -128.20 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -1.60 Total: -53.29 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -92.30 -0.32 -92.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755000829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.899 kcal (2) G-P(sol) polarization free energy of solvation -92.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds