Wall clock time and date at job start Fri Apr 10 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21571 * 120.00118 * 359.97438 * 5 4 2 7 7 C 1.47712 * 119.99934 * 179.97438 * 5 4 2 8 8 C 1.41507 * 126.51626 * 179.71323 * 7 5 4 9 9 C 1.35361 * 105.50305 * 179.90065 * 8 7 5 10 10 N 1.35040 * 107.22673 * 0.35484 * 9 8 7 11 11 C 1.46498 * 124.88320 * 179.76345 * 10 9 8 12 12 F 1.39902 * 109.47286 * 299.97530 * 11 10 9 13 13 F 1.39895 * 109.47520 * 59.97605 * 11 10 9 14 14 N 1.28464 * 110.23122 * 359.76470 * 10 9 8 15 15 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 16 16 C 1.53951 * 113.74032 * 158.74104 * 15 2 1 17 17 N 1.47814 * 86.03241 * 222.08256 * 16 15 2 18 18 C 1.36936 * 134.45554 * 204.64600 * 17 16 15 19 19 H 1.08000 * 119.99930 * 179.86546 * 18 17 16 20 20 C 1.38813 * 120.00235 * 359.86773 * 18 17 16 21 21 N 1.31620 * 119.99768 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00507 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47027 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47478 * 119.99768 * 22 20 18 25 25 H 1.48503 * 109.47374 * 239.99813 * 22 20 18 26 26 C 1.47582 * 91.05472 * 24.54901 * 17 16 15 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 31 31 H 1.07995 * 127.25225 * 0.02562 * 8 7 5 32 32 H 1.08000 * 126.38986 * 180.08885 * 9 8 7 33 33 H 1.09003 * 109.47255 * 179.97438 * 11 10 9 34 34 H 1.08996 * 112.94085 * 290.33107 * 15 2 1 35 35 H 1.08995 * 113.76589 * 336.34430 * 16 15 2 36 36 H 1.08995 * 113.76867 * 107.74965 * 16 15 2 37 37 H 0.96994 * 120.00624 * 179.97438 * 21 20 18 38 38 H 1.08998 * 113.77067 * 221.15214 * 26 17 16 39 39 H 1.09004 * 113.87049 * 89.76457 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8583 1.1613 2.4116 7 6 2.6390 -0.7149 3.5632 8 6 2.8315 -0.1459 4.8444 9 6 3.2877 -1.1545 5.6234 10 7 3.3685 -2.2554 4.8455 11 6 3.8250 -3.5710 5.3004 12 9 5.1386 -3.4716 5.7716 13 9 2.9932 -4.0229 6.3304 14 7 2.9875 -1.9831 3.6493 15 6 2.0400 -0.7212 -1.2494 16 6 3.4848 -0.3519 -1.6317 17 7 2.9978 -0.3175 -3.0269 18 6 3.5874 -0.4754 -4.2527 19 1 2.9926 -0.4035 -5.1513 20 6 4.9495 -0.7281 -4.3404 21 7 5.6744 -0.8154 -3.2453 22 14 5.7540 -0.9429 -6.0125 23 1 4.7288 -0.7991 -7.0772 24 1 6.8043 0.0913 -6.1931 25 1 6.3684 -2.2923 -6.0966 26 6 1.6213 -0.0470 -2.5685 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 2.2491 -1.6318 1.1525 31 1 2.6505 0.8771 5.1393 32 1 3.5439 -1.0898 6.6706 33 1 3.7895 -4.2753 4.4693 34 1 1.8528 -1.7947 -1.2264 35 1 3.8046 0.6192 -1.2540 36 1 4.2071 -1.1446 -1.4368 37 1 6.6261 -0.9923 -3.3064 38 1 0.8586 -0.5967 -3.1200 39 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969749802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:35 Heat of formation + Delta-G solvation = -13.987451 kcal Electronic energy + Delta-G solvation = -25631.601788 eV Core-core repulsion = 21441.335794 eV Total energy + Delta-G solvation = -4190.265994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.46101 -48.54620 -43.76262 -40.89909 -39.56300 -36.21711 -34.29090 -33.97294 -32.26809 -31.42600 -29.35251 -27.78229 -26.56711 -25.68351 -24.59842 -22.72051 -22.60415 -21.38550 -20.56161 -19.75165 -19.03868 -18.78578 -18.61066 -18.15555 -17.36098 -16.90958 -16.71798 -15.97115 -15.72369 -15.62658 -15.29589 -15.27128 -14.88321 -14.86436 -14.67116 -14.59906 -14.35612 -13.98365 -13.42513 -13.25164 -13.17352 -13.07567 -12.90597 -12.70008 -12.52903 -12.25140 -11.96798 -11.74121 -11.52674 -11.31243 -11.12578 -10.86997 -10.75916 -10.37534 -10.05650 -8.91038 -7.89725 -5.23347 0.24461 0.67328 0.96758 1.45552 1.46857 1.57110 2.07865 2.28598 2.44904 2.47917 3.02001 3.31186 3.38102 3.49174 3.50102 3.68107 3.76866 3.94211 4.04390 4.31528 4.48507 4.51776 4.59464 4.62470 4.76380 4.84753 4.88336 5.02355 5.07628 5.12907 5.27051 5.36198 5.40055 5.45970 5.56380 5.67253 5.94408 6.34224 6.64837 6.92461 7.12549 7.61804 8.57731 9.27397 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002992 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.801394 B = 9354.954675 C =10582.075547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.066 0.934 4 N -0.696 5.696 5 C 0.601 3.399 6 O -0.565 6.565 7 C -0.010 4.010 8 C -0.185 4.185 9 C 0.010 3.990 10 N -0.349 5.349 11 C 0.497 3.503 12 F -0.178 7.178 13 F -0.175 7.175 14 N -0.253 5.253 15 C -0.110 4.110 16 C 0.166 3.834 17 N -0.645 5.645 18 C -0.233 4.233 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.132 3.868 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.413 0.587 31 H 0.177 0.823 32 H 0.222 0.778 33 H 0.205 0.795 34 H 0.104 0.896 35 H 0.004 0.996 36 H 0.040 0.960 37 H 0.247 0.753 38 H 0.066 0.934 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 -6.782 21.007 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.084 0.916 4 N -0.347 5.347 5 C 0.386 3.614 6 O -0.442 6.442 7 C -0.173 4.173 8 C -0.212 4.212 9 C -0.130 4.130 10 N -0.146 5.146 11 C 0.365 3.635 12 F -0.159 7.159 13 F -0.156 7.156 14 N -0.086 5.086 15 C -0.129 4.129 16 C 0.041 3.959 17 N -0.371 5.371 18 C -0.362 4.362 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.217 1.217 26 C 0.007 3.993 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.249 0.751 31 H 0.194 0.806 32 H 0.239 0.761 33 H 0.221 0.779 34 H 0.122 0.878 35 H 0.022 0.978 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.961 -7.143 20.255 22.905 hybrid contribution 1.132 0.570 -0.187 1.282 sum -6.828 -6.573 20.068 22.194 Atomic orbital electron populations 1.22056 0.92904 1.03193 1.02593 1.20957 0.95388 0.95970 0.82382 0.91590 1.45890 1.65392 1.14701 1.08677 1.17064 0.76997 0.85373 0.82014 1.90772 1.52272 1.16127 1.85058 1.22098 1.07607 0.91093 0.96517 1.22124 1.06071 1.02033 0.90983 1.23516 1.03376 0.85403 1.00717 1.46882 1.49202 1.11323 1.07190 1.21679 0.71755 0.81815 0.88225 1.93159 1.36537 1.95812 1.90434 1.93154 1.72151 1.87555 1.62778 1.73432 1.15531 1.17227 1.02450 1.23447 0.96254 1.00550 0.92685 1.22185 0.94047 0.96462 0.83229 1.46439 1.05945 1.82848 1.01907 1.19510 0.91955 1.40279 0.84440 0.89633 1.25647 0.96793 1.03028 1.00789 1.70028 1.05786 1.56855 1.27789 0.85001 0.78211 0.76760 0.79304 1.18761 1.22260 1.21718 1.22684 0.87587 0.97673 0.91384 0.92906 0.90827 0.90282 0.75056 0.80593 0.76103 0.77856 0.87808 0.97808 0.94144 0.94397 0.91544 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.31 71.98 0.67 -2.99 16 2 C 0.16 4.83 2.38 44.99 0.11 4.94 16 3 H 0.07 2.38 7.41 -2.39 -0.02 2.36 16 4 N -0.70 -20.07 5.07 -445.54 -2.26 -22.33 16 5 C 0.60 18.70 7.79 86.75 0.68 19.37 16 6 O -0.56 -20.87 16.59 -3.94 -0.07 -20.94 16 7 C -0.01 -0.27 7.13 42.46 0.30 0.03 16 8 C -0.18 -3.93 10.81 22.41 0.24 -3.68 16 9 C 0.01 0.15 11.33 83.53 0.95 1.10 16 10 N -0.35 -6.02 3.56 -364.70 -1.30 -7.32 16 11 C 0.50 5.23 6.24 127.77 0.80 6.03 16 12 F -0.18 -2.28 17.46 44.97 0.79 -1.50 16 13 F -0.18 -1.97 17.46 44.97 0.79 -1.19 16 14 N -0.25 -5.73 11.67 -48.17 -0.56 -6.29 16 15 C -0.11 -3.86 3.47 -10.13 -0.04 -3.90 16 16 C 0.17 8.05 7.08 86.44 0.61 8.66 16 17 N -0.64 -33.42 3.70 -716.14 -2.65 -36.07 16 18 C -0.23 -13.26 10.70 84.03 0.90 -12.36 16 19 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.96 -58.83 11.39 21.65 0.25 -58.59 16 22 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 C 0.13 5.10 7.64 86.49 0.66 5.76 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.79 7.52 -2.38 -0.02 1.77 16 30 H 0.41 10.64 8.33 -92.71 -0.77 9.87 16 31 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.22 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.21 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.00 0.21 7.99 -2.39 -0.02 0.19 16 36 H 0.04 2.19 7.17 -2.39 -0.02 2.17 16 37 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 Total: -1.00 -76.32 346.63 3.67 -72.65 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.32 Total: 13.88 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.35 Total: 19.39 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -6.53 Total: -130.60 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.07 Total: -20.94 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 1.57 Total: -2.69 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -76.32 3.67 -72.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969749802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.663 kcal (2) G-P(sol) polarization free energy of solvation -76.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds