Wall clock time and date at job start Fri Apr 10 2020 18:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46682 * 2 1 4 4 N 1.46495 * 109.47361 * 240.00603 * 2 1 3 5 5 C 1.34773 * 120.00444 * 84.99505 * 4 2 1 6 6 O 1.21576 * 119.99831 * 0.02562 * 5 4 2 7 7 C 1.47712 * 120.00433 * 179.97438 * 5 4 2 8 8 C 1.41504 * 126.52181 * 179.71455 * 7 5 4 9 9 C 1.35360 * 105.50132 * 179.90302 * 8 7 5 10 10 N 1.35023 * 107.23228 * 0.35357 * 9 8 7 11 11 C 1.46502 * 124.88656 * 179.76004 * 10 9 8 12 12 F 1.39904 * 109.47369 * 209.97763 * 11 10 9 13 13 F 1.39897 * 109.47391 * 329.98252 * 11 10 9 14 14 N 1.28466 * 110.23205 * 359.76658 * 10 9 8 15 15 C 1.52994 * 109.47408 * 119.99854 * 2 1 3 16 16 C 1.53496 * 114.20848 * 300.00740 * 15 2 1 17 17 N 1.47070 * 87.98352 * 220.34045 * 16 15 2 18 18 C 1.36935 * 136.05550 * 207.07944 * 17 16 15 19 19 H 1.08005 * 120.00172 * 6.50069 * 18 17 16 20 20 C 1.38815 * 119.99990 * 186.49806 * 18 17 16 21 21 N 1.31619 * 119.99663 * 6.42579 * 20 18 17 22 22 Si 1.86800 * 119.99976 * 186.42252 * 20 18 17 23 23 H 1.48495 * 109.47340 * 265.02201 * 22 20 18 24 24 H 1.48498 * 109.46951 * 25.02385 * 22 20 18 25 25 H 1.48498 * 109.46744 * 145.01993 * 22 20 18 26 26 C 1.47064 * 87.88277 * 27.34197 * 17 16 15 27 27 H 1.08991 * 109.47372 * 299.99509 * 1 2 3 28 28 H 1.09004 * 109.47393 * 60.00317 * 1 2 3 29 29 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00021 * 264.99679 * 4 2 1 31 31 H 1.08002 * 127.24153 * 0.02562 * 8 7 5 32 32 H 1.08007 * 126.38211 * 180.08425 * 9 8 7 33 33 H 1.09009 * 109.46640 * 89.97897 * 11 10 9 34 34 H 1.09001 * 113.41134 * 73.20072 * 15 2 1 35 35 H 1.09004 * 113.46865 * 105.56483 * 16 15 2 36 36 H 1.08993 * 113.51976 * 335.12892 * 16 15 2 37 37 H 0.97005 * 119.99413 * 179.97438 * 21 20 18 38 38 H 1.09000 * 113.46743 * 87.44096 * 26 17 16 39 39 H 1.08999 * 113.46191 * 217.87327 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8582 1.1616 -2.4116 7 6 2.6400 -0.7142 -3.5631 8 6 2.8220 -0.1478 -4.8470 9 6 3.2880 -1.1539 -5.6234 10 7 3.3694 -2.2546 -4.8457 11 6 3.8259 -3.5703 -5.3006 12 9 3.1878 -4.5684 -4.5564 13 9 3.5157 -3.7287 -6.6556 14 7 2.9887 -1.9824 -3.6493 15 6 2.0400 -0.7212 1.2492 16 6 1.5898 -0.0847 2.5714 17 7 2.9390 -0.3446 3.0959 18 6 3.4925 -0.5603 4.3296 19 1 2.8564 -0.6648 5.1962 20 6 4.8713 -0.6448 4.4665 21 7 5.6515 -0.3926 3.4370 22 14 5.6194 -1.1163 6.1120 23 1 5.9751 0.1134 6.8646 24 1 4.6362 -1.9083 6.8939 25 1 6.8414 -1.9290 5.8855 26 6 3.4328 -0.2641 1.7130 27 1 -0.3633 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.2491 -1.6316 -1.1527 31 1 2.6312 0.8728 -5.1442 32 1 3.5428 -1.0894 -6.6711 33 1 4.9045 -3.6480 -5.1633 34 1 1.9119 -1.8028 1.2075 35 1 0.8095 -0.6495 3.0816 36 1 1.3544 0.9761 2.4855 37 1 6.6151 -0.4513 3.5328 38 1 3.6837 0.7494 1.3999 39 1 4.2228 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969749803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:38 Heat of formation + Delta-G solvation = -10.638479 kcal Electronic energy + Delta-G solvation = -25658.568084 eV Core-core repulsion = 21468.447312 eV Total energy + Delta-G solvation = -4190.120772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.42210 -48.53537 -43.72412 -40.95597 -39.70852 -36.25338 -34.31998 -33.98413 -32.20664 -31.45254 -29.40410 -27.78742 -26.46002 -25.70939 -24.51920 -22.71735 -22.61195 -21.39569 -20.59074 -19.76938 -19.27019 -18.76151 -18.51099 -18.11410 -17.35693 -16.90027 -16.69392 -15.95784 -15.75948 -15.59418 -15.37233 -15.25953 -14.90480 -14.81227 -14.68640 -14.46888 -14.30968 -13.98254 -13.50618 -13.30347 -13.23827 -13.00767 -12.97162 -12.70434 -12.61848 -12.15458 -12.06419 -11.74611 -11.58908 -11.28271 -10.98925 -10.85962 -10.64222 -10.31892 -10.06234 -8.94781 -7.93700 -5.26446 0.29216 0.74864 1.03578 1.45132 1.47344 1.56957 2.08609 2.30002 2.46965 2.53175 2.80076 3.29670 3.39031 3.50160 3.54887 3.69306 3.76470 3.95638 4.09863 4.28591 4.46905 4.56277 4.57213 4.64840 4.75726 4.82849 4.85466 4.99954 5.07013 5.14507 5.20315 5.34178 5.41578 5.47006 5.52361 5.63562 5.89547 6.36180 6.67760 6.88323 7.12499 7.58162 8.59918 9.25464 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.002967 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.543909 B = 9435.904775 C =10454.134052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 H 0.067 0.933 4 N -0.698 5.698 5 C 0.600 3.400 6 O -0.566 6.566 7 C -0.018 4.018 8 C -0.188 4.188 9 C 0.020 3.980 10 N -0.352 5.352 11 C 0.500 3.500 12 F -0.183 7.183 13 F -0.172 7.172 14 N -0.263 5.263 15 C -0.115 4.115 16 C 0.131 3.869 17 N -0.643 5.643 18 C -0.232 4.232 19 H 0.089 0.911 20 C -0.070 4.070 21 N -0.956 5.956 22 Si 0.983 3.017 23 H -0.288 1.288 24 H -0.264 1.264 25 H -0.293 1.293 26 C 0.167 3.833 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.412 0.588 31 H 0.177 0.823 32 H 0.234 0.766 33 H 0.213 0.787 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.248 0.752 38 H 0.007 0.993 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 -6.827 -23.050 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 H 0.086 0.914 4 N -0.349 5.349 5 C 0.385 3.615 6 O -0.443 6.443 7 C -0.180 4.180 8 C -0.215 4.215 9 C -0.120 4.120 10 N -0.149 5.149 11 C 0.370 3.630 12 F -0.164 7.164 13 F -0.153 7.153 14 N -0.098 5.098 15 C -0.135 4.135 16 C 0.005 3.995 17 N -0.369 5.369 18 C -0.360 4.360 19 H 0.107 0.893 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.810 3.190 23 H -0.215 1.215 24 H -0.188 1.188 25 H -0.220 1.220 26 C 0.041 3.959 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.248 0.752 31 H 0.194 0.806 32 H 0.250 0.750 33 H 0.229 0.771 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.658 -7.222 -22.251 24.068 hybrid contribution 0.737 0.366 0.418 0.923 sum -4.922 -6.856 -21.833 23.407 Atomic orbital electron populations 1.22054 0.92947 1.03130 1.02606 1.20865 0.95352 0.95915 0.82213 0.91432 1.45917 1.65503 1.14654 1.08776 1.17128 0.76955 0.85384 0.82062 1.90767 1.52370 1.16096 1.85076 1.22104 1.08045 0.91235 0.96615 1.22147 1.06199 1.02327 0.90862 1.23465 1.03516 0.84401 1.00621 1.47148 1.49225 1.11297 1.07278 1.22325 0.97763 0.71050 0.71912 1.93135 1.85390 1.60827 1.77073 1.93153 1.95197 1.94299 1.32668 1.73533 1.15754 1.17086 1.03433 1.23324 0.96864 1.00477 0.92792 1.22473 0.88466 0.97700 0.90819 1.46075 1.05672 1.82409 1.02728 1.19413 0.90474 1.40929 0.85146 0.89328 1.25741 0.96389 1.02738 1.01421 1.70062 1.02978 1.55850 1.31572 0.85000 0.77737 0.77564 0.78661 1.21463 1.18792 1.21988 1.21969 0.94195 0.95982 0.83762 0.90247 0.92874 0.90956 0.75198 0.80562 0.74993 0.77142 0.87572 0.91847 0.93945 0.94304 0.97561 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.29 71.98 0.67 -3.18 16 2 C 0.16 5.12 2.47 44.99 0.11 5.23 16 3 H 0.07 2.49 7.32 -2.38 -0.02 2.48 16 4 N -0.70 -21.05 5.07 -445.55 -2.26 -23.31 16 5 C 0.60 19.21 7.79 86.75 0.68 19.88 16 6 O -0.57 -21.25 16.59 -3.95 -0.07 -21.31 16 7 C -0.02 -0.48 7.13 42.46 0.30 -0.18 16 8 C -0.19 -3.82 10.81 22.41 0.24 -3.58 16 9 C 0.02 0.27 10.98 83.54 0.92 1.18 16 10 N -0.35 -5.81 3.68 -364.68 -1.34 -7.15 16 11 C 0.50 4.74 6.56 127.77 0.84 5.57 16 12 F -0.18 -2.90 17.26 44.97 0.78 -2.12 16 13 F -0.17 -1.50 16.96 44.97 0.76 -0.74 16 14 N -0.26 -6.34 11.41 -48.17 -0.55 -6.89 16 15 C -0.11 -4.16 3.67 -10.38 -0.04 -4.20 16 16 C 0.13 5.22 7.33 83.17 0.61 5.83 16 17 N -0.64 -33.94 3.76 -738.00 -2.78 -36.72 16 18 C -0.23 -13.29 10.73 84.03 0.90 -12.39 16 19 H 0.09 4.80 7.84 -2.91 -0.02 4.77 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 21 N -0.96 -59.66 11.81 21.65 0.26 -59.40 16 22 Si 0.98 46.39 29.56 68.60 2.03 48.42 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 C 0.17 8.24 6.80 83.26 0.57 8.80 16 27 H 0.08 1.90 7.48 -2.39 -0.02 1.88 16 28 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.41 11.39 8.33 -92.71 -0.77 10.62 16 31 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.23 0.87 8.06 -2.91 -0.02 0.84 16 33 H 0.21 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 37 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 38 H 0.01 0.35 7.93 -2.39 -0.02 0.33 16 39 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 Total: -1.00 -79.78 346.19 3.41 -76.37 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.32 Total: 13.49 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 6.26 Total: 19.36 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -6.67 Total: -133.46 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.07 Total: -21.31 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 1.54 Total: -2.86 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -79.78 3.41 -76.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969749803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.729 kcal (2) G-P(sol) polarization free energy of solvation -79.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds