Wall clock time and date at job start Fri Apr 10 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21608 * 119.99614 * 359.97438 * 5 4 2 7 7 C 1.47426 * 119.99778 * 180.02562 * 5 4 2 8 8 C 1.41288 * 126.41767 * 359.68091 * 7 5 4 9 9 N 1.30453 * 108.02237 * 179.86050 * 8 7 5 10 10 N 1.39932 * 108.89532 * 0.40626 * 9 8 7 11 11 C 1.46500 * 125.75204 * 179.73409 * 10 9 8 12 12 F 1.39901 * 109.46949 * 30.00727 * 11 10 9 13 13 F 1.39906 * 109.47006 * 150.00358 * 11 10 9 14 14 C 1.34257 * 108.49385 * 359.74212 * 10 9 8 15 15 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 16 16 C 1.53486 * 114.20850 * 60.00280 * 15 2 1 17 17 N 1.47064 * 87.98715 * 87.51930 * 16 15 2 18 18 C 1.36944 * 136.05968 * 207.08932 * 17 16 15 19 19 H 1.07995 * 119.99517 * 7.55331 * 18 17 16 20 20 C 1.38804 * 120.00270 * 187.55676 * 18 17 16 21 21 N 1.31616 * 120.00491 * 174.37770 * 20 18 17 22 22 Si 1.86810 * 119.99801 * 354.37977 * 20 18 17 23 23 H 1.48499 * 109.46858 * 174.95062 * 22 20 18 24 24 H 1.48498 * 109.46907 * 294.94544 * 22 20 18 25 25 H 1.48495 * 109.47036 * 54.94600 * 22 20 18 26 26 C 1.47066 * 87.88390 * 27.34185 * 17 16 15 27 27 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 28 28 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 30 30 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 31 31 H 1.08001 * 125.98513 * 0.02562 * 8 7 5 32 32 H 1.08992 * 109.47142 * 270.00299 * 11 10 9 33 33 H 1.08004 * 126.29086 * 180.02562 * 14 10 9 34 34 H 1.08998 * 113.41116 * 286.79710 * 15 2 1 35 35 H 1.09003 * 113.46770 * 332.73878 * 16 15 2 36 36 H 1.09004 * 113.52153 * 202.31032 * 16 15 2 37 37 H 0.97003 * 119.99848 * 354.81683 * 21 20 18 38 38 H 1.08996 * 113.46631 * 87.44126 * 26 17 16 39 39 H 1.09001 * 113.46561 * 217.88042 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8583 1.1617 2.4116 7 6 2.6390 -0.7132 3.5607 8 6 3.0066 -2.0744 3.6520 9 7 3.3907 -2.3075 4.8767 10 7 3.2800 -1.1264 5.6189 11 6 3.6094 -0.9733 7.0381 12 9 4.6300 -1.8673 7.3791 13 9 4.0373 0.3368 7.2788 14 6 2.8209 -0.1573 4.8111 15 6 2.0399 -0.7213 -1.2493 16 6 1.5898 -0.0846 -2.5714 17 7 2.7723 0.7864 -2.4946 18 6 3.1105 2.0324 -2.9511 19 1 2.3637 2.6574 -3.4179 20 6 4.4131 2.4918 -2.8140 21 7 4.7655 3.6412 -3.3498 22 14 5.6662 1.4788 -1.8688 23 1 7.0008 2.1220 -1.9706 24 1 5.2629 1.3987 -0.4418 25 1 5.7308 0.1107 -2.4425 26 6 3.4340 -0.2723 -1.7172 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 2.2490 -1.6318 1.1526 31 1 2.9774 -2.7949 2.8480 32 1 2.7259 -1.1834 7.6409 33 1 2.6296 0.8689 5.0885 34 1 1.9117 -1.8029 -1.2076 35 1 0.6466 0.4562 -2.4938 36 1 1.6122 -0.7736 -3.4158 37 1 4.1374 4.1310 -3.9035 38 1 3.9431 -1.0113 -2.3358 39 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970651053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:48 Heat of formation + Delta-G solvation = 16.960958 kcal Electronic energy + Delta-G solvation = -25997.233813 eV Core-core repulsion = 21808.309843 eV Total energy + Delta-G solvation = -4188.923970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.84745 -47.96230 -41.71777 -39.66683 -38.34167 -34.78647 -33.34298 -32.33476 -31.08068 -30.05628 -27.79333 -26.75440 -25.38210 -24.04266 -22.86797 -21.87065 -21.18644 -20.26307 -19.36370 -18.71157 -18.62500 -17.83927 -17.40825 -16.68637 -16.22809 -15.45204 -15.32476 -15.09203 -14.76883 -14.62367 -14.40194 -14.25254 -13.95323 -13.84280 -13.48299 -13.29256 -13.13774 -13.04901 -12.76801 -12.19668 -11.97769 -11.59399 -11.43609 -11.23151 -10.94689 -10.57426 -10.30437 -10.26393 -10.19375 -9.76293 -9.26606 -9.15594 -9.08138 -8.87123 -8.77785 -7.11057 -6.23376 -3.17382 0.99690 1.29733 1.82715 2.93399 3.19847 3.43645 3.44588 3.49719 3.53477 3.68801 3.88566 4.22168 4.39994 4.65083 4.79264 4.79601 4.93119 4.96746 5.10851 5.34319 5.50681 5.63848 5.72695 5.86287 5.88259 5.96159 6.04458 6.09637 6.23043 6.30089 6.34350 6.47423 6.54100 6.68992 6.93741 6.95961 7.17367 7.67976 8.29631 8.39662 9.03403 9.55965 10.42062 11.26631 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.003419 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.467564 B = 8187.803937 C = 8951.657266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.104 0.896 4 N -0.716 5.716 5 C 0.591 3.409 6 O -0.539 6.539 7 C -0.271 4.271 8 C 0.096 3.904 9 N -0.276 5.276 10 N -0.433 5.433 11 C 0.512 3.488 12 F -0.170 7.170 13 F -0.177 7.177 14 C 0.141 3.859 15 C -0.141 4.141 16 C 0.130 3.870 17 N -0.627 5.627 18 C -0.302 4.302 19 H 0.083 0.917 20 C -0.024 4.024 21 N -0.936 5.936 22 Si 1.068 2.932 23 H -0.296 1.296 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.099 3.901 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.395 0.605 31 H 0.200 0.800 32 H 0.160 0.840 33 H 0.197 0.803 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 -15.242 20.304 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.064 3.936 3 H 0.122 0.878 4 N -0.366 5.366 5 C 0.377 3.623 6 O -0.417 6.417 7 C -0.285 4.285 8 C -0.094 4.094 9 N -0.094 5.094 10 N -0.222 5.222 11 C 0.379 3.621 12 F -0.151 7.151 13 F -0.159 7.159 14 C -0.006 4.006 15 C -0.161 4.161 16 C 0.003 3.997 17 N -0.355 5.355 18 C -0.428 4.428 19 H 0.100 0.900 20 C -0.222 4.222 21 N -0.578 5.578 22 Si 0.901 3.099 23 H -0.224 1.224 24 H -0.220 1.220 25 H -0.215 1.215 26 C -0.026 4.026 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.228 0.772 31 H 0.216 0.784 32 H 0.176 0.824 33 H 0.214 0.786 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.345 -14.950 21.806 26.974 hybrid contribution -1.465 0.111 -1.285 1.952 sum -6.810 -14.839 20.521 26.224 Atomic orbital electron populations 1.22107 0.95371 1.01430 1.02532 1.20654 0.93403 0.98200 0.81368 0.87830 1.45841 1.67512 1.13659 1.09623 1.17109 0.77258 0.85923 0.81992 1.90823 1.50698 1.15206 1.84936 1.20498 1.17931 0.94849 0.95255 1.24309 0.94875 0.95473 0.94724 1.77300 1.23889 1.03345 1.04880 1.49772 1.52908 1.09500 1.10050 1.21337 0.88727 0.72713 0.79358 1.93142 1.62960 1.67966 1.91076 1.93165 1.91753 1.37752 1.93205 1.22999 0.93061 0.95262 0.89232 1.23202 0.99435 0.98240 0.95234 1.22358 0.92721 0.91892 0.92703 1.46022 1.13225 1.12612 1.63688 1.20141 0.96377 0.88627 1.37664 0.89955 1.25657 0.96076 0.99146 1.01368 1.70910 1.37604 1.15122 1.34163 0.83744 0.75938 0.74518 0.75686 1.22359 1.22040 1.21527 1.22824 0.94090 0.91252 0.94475 0.91184 0.92920 0.92476 0.77158 0.78388 0.82358 0.78636 0.90433 0.93237 0.94280 0.92968 0.93736 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.29 37.16 0.35 -1.79 16 2 C 0.17 2.68 2.43 -67.93 -0.16 2.51 16 3 H 0.10 2.20 7.36 -51.93 -0.38 1.82 16 4 N -0.72 -9.48 5.07 -54.88 -0.28 -9.75 16 5 C 0.59 8.80 7.78 -12.52 -0.10 8.70 16 6 O -0.54 -10.31 16.56 5.27 0.09 -10.22 16 7 C -0.27 -3.18 6.13 -105.07 -0.64 -3.82 16 8 C 0.10 0.92 11.50 -16.98 -0.20 0.72 16 9 N -0.28 -2.95 12.32 30.86 0.38 -2.57 16 10 N -0.43 -4.08 3.94 -66.09 -0.26 -4.34 16 11 C 0.51 3.27 6.62 59.85 0.40 3.67 16 12 F -0.17 -1.45 17.35 2.25 0.04 -1.42 16 13 F -0.18 -1.31 17.00 2.25 0.04 -1.27 16 14 C 0.14 1.46 10.84 -16.56 -0.18 1.28 16 15 C -0.14 -2.24 3.73 -89.97 -0.34 -2.58 16 16 C 0.13 2.44 8.08 -8.52 -0.07 2.37 16 17 N -0.63 -15.28 3.49 -184.63 -0.64 -15.92 16 18 C -0.30 -8.82 11.08 -15.06 -0.17 -8.98 16 19 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 20 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 21 N -0.94 -30.27 13.70 55.49 0.76 -29.51 16 22 Si 1.07 27.75 25.16 -169.99 -4.28 23.47 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.29 -7.38 6.51 56.52 0.37 -7.01 16 25 H -0.29 -6.89 6.20 56.52 0.35 -6.53 16 26 C 0.10 2.05 5.24 -8.38 -0.04 2.00 16 27 H 0.07 0.99 6.50 -51.93 -0.34 0.65 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.39 3.75 7.56 -40.82 -0.31 3.44 16 31 H 0.20 1.16 7.50 -52.49 -0.39 0.77 16 32 H 0.16 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.89 6.43 -51.93 -0.33 0.56 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 8.29 8.73 -40.82 -0.36 7.94 16 38 H 0.05 0.89 7.66 -51.93 -0.40 0.50 16 39 H 0.05 1.18 4.71 -51.93 -0.24 0.93 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -38.06 335.90 -4.94 -43.00 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.59 Total: 0.22 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.25 Total: 3.26 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.04 Total: -62.10 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.08 Total: -2.69 kcal Atomic # 14 Polarization: 27.75 SS G_CDS: -4.28 Total: 23.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -38.06 -4.94 -43.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970651053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.962 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds