Wall clock time and date at job start Fri Apr 10 2020 18:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.99707 * 2 1 4 4 C 1.54319 * 109.88527 * 121.09052 * 2 1 3 5 5 H 1.09007 * 110.71874 * 23.07477 * 4 2 1 6 6 N 1.46497 * 110.72637 * 259.97700 * 4 2 1 7 7 C 1.36939 * 120.00583 * 157.16259 * 6 4 2 8 8 H 1.07997 * 119.99614 * 0.27762 * 7 6 4 9 9 C 1.38811 * 120.00163 * 180.28039 * 7 6 4 10 10 N 1.31612 * 120.00254 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99972 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46956 * 89.99415 * 11 9 7 13 13 H 1.48495 * 109.47267 * 209.99653 * 11 9 7 14 14 H 1.48498 * 109.47074 * 329.99788 * 11 9 7 15 15 C 1.55162 * 103.10565 * 141.52335 * 4 2 1 16 16 C 1.54912 * 101.57687 * 324.59206 * 15 4 2 17 17 N 1.47314 * 110.06895 * 238.82660 * 2 1 3 18 18 C 1.34777 * 125.61416 * 61.74382 * 17 2 1 19 19 O 1.21602 * 120.00166 * 358.80771 * 18 17 2 20 20 C 1.47427 * 120.00176 * 178.79989 * 18 17 2 21 21 C 1.41292 * 126.41164 * 8.35403 * 20 18 17 22 22 N 1.30453 * 108.02089 * 179.87467 * 21 20 18 23 23 N 1.39935 * 108.89700 * 0.38585 * 22 21 20 24 24 C 1.46502 * 125.75341 * 179.73254 * 23 22 21 25 25 F 1.39904 * 109.47204 * 30.01795 * 24 23 22 26 26 F 1.39898 * 109.47052 * 150.02192 * 24 23 22 27 27 C 1.34252 * 108.49084 * 359.74828 * 23 22 21 28 28 H 1.08997 * 109.47440 * 298.90267 * 1 2 3 29 29 H 1.08989 * 109.47170 * 58.90972 * 1 2 3 30 30 H 1.09007 * 109.46572 * 178.90578 * 1 2 3 31 31 H 0.97010 * 119.99576 * 337.44464 * 6 4 2 32 32 H 0.96997 * 120.00280 * 180.02562 * 10 9 7 33 33 H 1.09001 * 111.00035 * 82.66439 * 15 4 2 34 34 H 1.08999 * 111.00719 * 206.51278 * 15 4 2 35 35 H 1.09000 * 110.36215 * 155.84345 * 16 15 4 36 36 H 1.09000 * 110.36543 * 278.16518 * 16 15 4 37 37 H 1.08003 * 125.99018 * 359.97438 * 21 20 18 38 38 H 1.09005 * 109.46701 * 270.02435 * 24 23 22 39 39 H 1.08007 * 126.29326 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 1.3040 -1.4436 1.6201 6 7 2.4555 0.1962 2.2875 7 6 2.5009 -0.2072 3.5954 8 1 2.2457 -1.2237 3.8560 9 6 2.8749 0.6904 4.5860 10 7 3.1863 1.9291 4.2682 11 14 2.9375 0.1399 6.3699 12 1 4.2925 -0.3833 6.6792 13 1 2.6388 1.2943 7.2550 14 1 1.9312 -0.9289 6.5938 15 6 3.2871 -1.5176 0.6959 16 6 2.8162 -1.8830 -0.7340 17 7 2.0355 -0.7162 -1.1839 18 6 1.8176 -0.3642 -2.4665 19 8 1.1348 0.6090 -2.7223 20 6 2.4072 -1.1589 -3.5594 21 6 3.0775 -2.3958 -3.4297 22 7 3.4490 -2.7803 -4.6197 23 7 3.0478 -1.8176 -5.5527 24 6 3.2817 -1.8764 -6.9977 25 9 3.3174 -3.2128 -7.4104 26 9 2.2485 -1.2097 -7.6649 27 6 2.4128 -0.8310 -4.9003 28 1 -0.3634 0.4967 0.8996 29 1 -0.3633 0.5306 -0.8800 30 1 -0.3633 -1.0276 -0.0196 31 1 2.6846 1.1093 2.0533 32 1 3.4480 2.5562 4.9604 33 1 4.1665 -0.8743 0.6652 34 1 3.4813 -2.4143 1.2844 35 1 3.6744 -2.0400 -1.3874 36 1 2.1882 -2.7736 -0.7106 37 1 3.2506 -2.9303 -2.5073 38 1 4.2331 -1.3985 -7.2315 39 1 1.9853 0.0566 -5.3431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987269806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:02 Heat of formation + Delta-G solvation = -16.910570 kcal Electronic energy + Delta-G solvation = -25933.811718 eV Core-core repulsion = 21743.418968 eV Total energy + Delta-G solvation = -4190.392750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.85496 -47.96770 -41.73933 -39.65338 -37.29967 -34.25945 -33.31691 -31.66810 -30.98891 -30.53773 -29.06423 -26.73419 -25.31485 -23.69285 -23.25562 -21.72139 -21.56804 -20.10360 -19.55982 -18.65640 -18.45233 -17.88074 -17.25945 -16.35242 -16.07279 -15.44907 -15.23122 -14.96689 -14.72600 -14.57799 -14.29588 -13.97081 -13.86973 -13.66669 -13.41685 -13.19318 -12.88504 -12.76190 -12.73301 -12.15278 -11.85994 -11.56728 -11.40509 -11.12670 -11.04180 -10.84458 -10.60362 -10.29948 -10.21088 -10.03734 -9.80005 -9.64173 -9.20999 -8.95669 -8.39595 -7.04804 -5.83003 -3.13484 1.01856 1.31509 1.87231 2.93712 3.06128 3.40206 3.41217 3.45608 3.47422 3.50216 3.89265 4.24158 4.44643 4.53709 4.67705 4.96126 4.98140 5.12181 5.26531 5.38122 5.46153 5.54571 5.67020 5.77796 5.88571 5.96133 6.06344 6.10307 6.12109 6.28387 6.45329 6.57411 6.62312 6.73735 6.91078 7.00678 7.64477 7.74655 8.33370 8.35889 9.45917 10.00324 10.34891 11.39149 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.034543 B = 0.002612 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.381496 B =10718.001530 C =11127.880786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 H 0.079 0.921 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.085 3.915 17 N -0.602 5.602 18 C 0.605 3.395 19 O -0.548 6.548 20 C -0.265 4.265 21 C 0.082 3.918 22 N -0.277 5.277 23 N -0.433 5.433 24 C 0.512 3.488 25 F -0.171 7.171 26 F -0.179 7.179 27 C 0.138 3.862 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.212 0.788 38 H 0.160 0.840 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -8.740 -21.780 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 H 0.097 0.903 4 C 0.064 3.936 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.038 4.038 17 N -0.335 5.335 18 C 0.394 3.606 19 O -0.427 6.427 20 C -0.280 4.280 21 C -0.107 4.107 22 N -0.095 5.095 23 N -0.223 5.223 24 C 0.378 3.622 25 F -0.152 7.152 26 F -0.160 7.160 27 C -0.009 4.009 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.176 0.824 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.172 -9.182 -22.690 24.506 hybrid contribution -0.303 0.519 1.258 1.394 sum 0.869 -8.663 -21.433 23.134 Atomic orbital electron populations 1.22042 0.94773 1.01654 1.02771 1.21996 0.94458 0.96874 0.84077 0.90310 1.21252 0.93538 0.91632 0.87176 0.91540 1.42354 1.80208 1.10528 1.02382 1.19202 1.39062 0.95968 0.83224 0.90970 1.24764 1.02031 0.95727 0.98118 1.69659 1.51878 1.03749 1.32442 0.86185 0.77697 0.77322 0.84920 1.21672 1.21765 1.20686 1.23595 1.01505 1.01850 0.92795 1.22795 0.94869 0.88691 0.97437 1.48357 1.51986 1.28465 1.04666 1.16725 0.79976 0.83357 0.80586 1.90769 1.40277 1.28350 1.83260 1.20426 1.13877 1.00092 0.93570 1.25136 0.94325 0.94556 0.96720 1.77347 1.23341 1.10969 0.97865 1.49789 1.46992 1.18363 1.07144 1.21337 0.90086 0.77140 0.73605 1.93141 1.96877 1.36016 1.89135 1.93151 1.63204 1.80309 1.79346 1.22931 0.92527 0.93544 0.91854 0.91092 0.91910 0.93078 0.77968 0.93363 0.90513 0.90415 0.90485 0.91276 0.77180 0.82362 0.78731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.11 37.16 0.34 -2.19 16 2 C 0.13 2.22 3.22 -66.80 -0.22 2.01 16 3 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 4 C 0.18 3.23 3.12 -66.10 -0.21 3.02 16 5 H 0.07 1.22 7.81 -51.92 -0.41 0.82 16 6 N -0.71 -16.88 5.24 -51.65 -0.27 -17.15 16 7 C -0.24 -6.39 9.97 -15.06 -0.15 -6.54 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 11 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.16 -2.39 6.77 -24.58 -0.17 -2.56 16 16 C 0.09 1.03 5.27 -2.53 -0.01 1.02 16 17 N -0.60 -8.97 3.08 -164.06 -0.50 -9.48 16 18 C 0.60 9.29 7.65 -12.52 -0.10 9.19 16 19 O -0.55 -10.04 15.94 5.28 0.08 -9.95 16 20 C -0.27 -3.28 6.06 -105.07 -0.64 -3.91 16 21 C 0.08 0.88 10.29 -16.98 -0.17 0.71 16 22 N -0.28 -3.13 12.32 30.86 0.38 -2.75 16 23 N -0.43 -4.16 3.94 -66.09 -0.26 -4.42 16 24 C 0.51 3.24 6.62 59.85 0.40 3.64 16 25 F -0.17 -1.43 17.35 2.25 0.04 -1.39 16 26 F -0.18 -1.24 17.00 2.25 0.04 -1.20 16 27 C 0.14 1.43 10.85 -16.56 -0.18 1.25 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.39 9.89 7.53 -40.82 -0.31 9.58 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 0.77 5.27 -51.93 -0.27 0.50 16 36 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.21 1.79 4.80 -52.48 -0.25 1.54 16 38 H 0.16 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.20 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -33.05 336.16 -5.42 -38.47 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.50 Total: 7.48 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.20 Total: 5.26 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.07 Total: -60.36 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.05 -5.42 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987269806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.559 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds