Wall clock time and date at job start Fri Apr 10 2020 18:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48494 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46897 * 299.99742 * 3 2 1 6 6 H 1.48507 * 109.47271 * 59.99313 * 3 2 1 7 7 C 1.38812 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00012 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.84532 * 336.19771 * 10 9 7 12 12 C 1.53777 * 113.69379 * 107.46534 * 10 9 7 13 13 C 1.53778 * 87.08221 * 139.99274 * 12 10 9 14 14 H 1.09002 * 113.68900 * 89.12517 * 13 12 10 15 15 N 1.46498 * 113.61220 * 220.02018 * 13 12 10 16 16 C 1.34777 * 119.99828 * 252.21874 * 15 13 12 17 17 O 1.21573 * 119.99937 * 0.28077 * 16 15 13 18 18 C 1.47712 * 120.00297 * 180.27851 * 16 15 13 19 19 C 1.41495 * 126.52219 * 179.71498 * 18 16 15 20 20 C 1.35364 * 105.50420 * 179.90162 * 19 18 16 21 21 N 1.35035 * 107.22797 * 0.35739 * 20 19 18 22 22 C 1.46496 * 124.88329 * 179.76833 * 21 20 19 23 23 C 1.52991 * 109.47530 * 124.97351 * 22 21 20 24 24 F 1.39907 * 109.47482 * 64.99606 * 23 22 21 25 25 F 1.39898 * 109.47514 * 184.99780 * 23 22 21 26 26 N 1.28469 * 110.22969 * 359.76342 * 21 20 19 27 27 C 1.53779 * 113.61564 * 205.00476 * 10 9 7 28 28 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00262 * 359.97438 * 9 7 2 30 30 H 1.09001 * 113.61338 * 25.44002 * 12 10 9 31 31 H 1.09000 * 113.61355 * 254.54265 * 12 10 9 32 32 H 0.97001 * 120.00384 * 72.50320 * 15 13 12 33 33 H 1.08002 * 127.24757 * 0.02562 * 19 18 16 34 34 H 1.08004 * 126.38418 * 180.08678 * 20 19 18 35 35 H 1.09010 * 109.46839 * 244.97292 * 22 21 20 36 36 H 1.09000 * 109.47330 * 4.96665 * 22 21 20 37 37 H 1.08999 * 109.47289 * 304.99834 * 23 22 21 38 38 H 1.08997 * 113.61777 * 105.38136 * 27 10 9 39 39 H 1.08999 * 113.61498 * 334.47631 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0661 -3.5639 -0.4030 12 6 2.0001 -4.4026 1.3452 13 6 1.8495 -5.6978 0.5300 14 1 2.7995 -6.1642 0.2693 15 7 0.8897 -6.6442 1.1041 16 6 1.3279 -7.7743 1.6934 17 8 2.5199 -8.0058 1.7531 18 6 0.3600 -8.7315 2.2668 19 6 0.6651 -9.9554 2.9080 20 6 -0.5286 -10.4836 3.2662 21 7 -1.4858 -9.6254 2.8532 22 6 -2.9254 -9.8230 3.0396 23 6 -3.5176 -8.6105 3.7605 24 9 -3.4018 -7.4801 2.9442 25 9 -4.8677 -8.8475 4.0400 26 7 -0.9525 -8.6106 2.2733 27 6 1.2608 -4.8290 -0.5940 28 1 -0.4850 0.8401 -0.0004 29 1 0.3557 -2.3880 0.0005 30 1 1.1219 -4.1581 1.9427 31 1 2.9284 -4.3502 1.9141 32 1 -0.0613 -6.4595 1.0564 33 1 1.6444 -10.3781 3.0778 34 1 -0.6863 -11.4193 3.7820 35 1 -3.4052 -9.9379 2.0676 36 1 -3.0948 -10.7191 3.6365 37 1 -2.9777 -8.4424 4.6924 38 1 1.5921 -5.1208 -1.5905 39 1 0.1804 -4.7011 -0.5266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022245624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:33 Heat of formation + Delta-G solvation = -20.168562 kcal Electronic energy + Delta-G solvation = -25257.455235 eV Core-core repulsion = 21066.921208 eV Total energy + Delta-G solvation = -4190.534027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.47827 -47.45765 -43.00238 -39.62113 -37.80762 -34.60456 -34.03497 -32.67019 -31.05611 -29.99099 -29.41200 -25.43232 -25.05895 -24.23211 -23.10665 -21.86714 -21.53888 -20.10877 -19.24649 -18.57353 -18.08789 -17.55031 -17.33578 -17.00941 -16.41319 -16.07878 -15.58312 -14.70125 -14.60568 -14.47088 -14.36911 -14.09891 -13.97740 -13.79221 -13.58273 -13.43906 -13.00090 -12.87010 -12.76225 -12.09848 -11.84809 -11.76896 -11.24830 -11.16234 -10.90959 -10.64208 -10.45394 -10.28968 -10.03760 -9.86354 -9.64072 -9.57931 -9.45279 -8.87505 -8.67875 -6.94517 -5.76645 -3.05364 1.28938 1.75865 1.83204 2.97423 3.30350 3.41001 3.44704 3.50670 3.52766 3.56691 3.60572 4.02769 4.31419 4.39906 4.57246 4.61068 4.62522 4.95771 5.12313 5.28862 5.33237 5.41845 5.47642 5.51835 5.91211 5.98444 6.05822 6.17549 6.26696 6.32079 6.37729 6.56849 6.66761 6.79463 7.11817 7.43421 7.72666 7.76973 8.31387 8.41806 9.53146 10.10442 10.45032 11.45821 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.002758 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.013095 B =10150.492353 C =11655.839702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.111 0.889 15 N -0.698 5.698 16 C 0.600 3.400 17 O -0.538 6.538 18 C -0.004 4.004 19 C -0.174 4.174 20 C -0.018 4.018 21 N -0.294 5.294 22 C 0.075 3.925 23 C 0.258 3.742 24 F -0.181 7.181 25 F -0.195 7.195 26 N -0.251 5.251 27 C -0.158 4.158 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.407 0.593 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -26.350 8.191 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.129 0.871 15 N -0.347 5.347 16 C 0.384 3.616 17 O -0.413 6.413 18 C -0.165 4.165 19 C -0.202 4.202 20 C -0.159 4.159 21 N -0.083 5.083 22 C -0.047 4.047 23 C 0.203 3.797 24 F -0.162 7.162 25 F -0.176 7.176 26 N -0.085 5.085 27 C -0.198 4.198 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.242 0.758 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.135 -25.606 7.870 27.722 hybrid contribution -0.022 0.390 0.341 0.519 sum -7.157 -25.216 8.211 27.468 Atomic orbital electron populations 1.69678 1.05136 1.25608 1.57647 1.24772 0.95534 0.97799 1.02871 0.86110 0.78846 0.84048 0.77152 1.20477 1.21866 1.21881 1.19365 0.91179 0.84145 1.42659 0.90918 1.42373 1.05733 0.99779 1.86952 1.21350 0.95472 0.84925 0.92633 0.90160 1.24336 1.01926 0.94997 1.00532 1.22568 0.93187 0.87389 0.95656 0.87080 1.45944 1.11133 1.20423 1.57219 1.16900 0.86476 0.80404 0.77826 1.90784 1.15418 1.76278 1.58806 1.22211 0.89977 0.98229 1.06119 1.21853 0.99090 0.95496 1.03719 1.22910 0.87787 0.99039 1.06153 1.45120 1.06477 1.15056 1.41611 1.22970 0.76819 0.99503 1.05418 1.21917 0.79599 0.83791 0.94424 1.93128 1.95655 1.52692 1.74727 1.93038 1.35627 1.94614 1.94343 1.73705 1.09694 1.10101 1.15025 1.23870 1.01334 0.97224 0.97408 0.93530 0.78057 0.90141 0.92134 0.75816 0.81650 0.79764 0.86386 0.84707 0.86693 0.91416 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.71 -17.92 5.40 -52.64 -0.28 -18.20 16 10 C 0.17 3.38 4.48 -67.12 -0.30 3.08 16 11 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 12 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 13 C 0.12 1.86 4.24 -67.12 -0.28 1.57 16 14 H 0.11 1.79 7.46 -51.93 -0.39 1.40 16 15 N -0.70 -10.36 5.35 -54.00 -0.29 -10.65 16 16 C 0.60 9.26 7.82 -12.39 -0.10 9.17 16 17 O -0.54 -9.72 16.52 5.30 0.09 -9.63 16 18 C 0.00 -0.05 7.13 -82.77 -0.59 -0.64 16 19 C -0.17 -1.72 10.81 -39.37 -0.43 -2.14 16 20 C -0.02 -0.12 11.40 -17.17 -0.20 -0.31 16 21 N -0.29 -2.27 3.41 -61.33 -0.21 -2.48 16 22 C 0.08 0.31 6.63 -4.05 -0.03 0.28 16 23 C 0.26 1.57 5.48 37.15 0.20 1.78 16 24 F -0.18 -1.92 16.49 2.25 0.04 -1.88 16 25 F -0.19 -1.34 17.34 2.25 0.04 -1.30 16 26 N -0.25 -2.89 10.69 33.42 0.36 -2.53 16 27 C -0.16 -2.62 7.58 -25.92 -0.20 -2.82 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.39 10.27 7.92 -40.82 -0.32 9.95 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.41 5.65 8.45 -40.82 -0.35 5.31 16 33 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.19 0.37 8.06 -52.48 -0.42 -0.05 16 35 H 0.12 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.13 -0.01 8.04 -51.93 -0.42 -0.43 16 37 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -35.35 348.89 -6.48 -41.83 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.82 Total: 10.52 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.36 Total: -0.86 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.30 Total: -61.46 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.35 -6.48 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022245624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.660 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds