Wall clock time and date at job start Fri Apr 10 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48494 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46897 * 299.99742 * 3 2 1 6 6 H 1.48507 * 109.47271 * 59.99313 * 3 2 1 7 7 C 1.38812 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00012 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.84532 * 336.19771 * 10 9 7 12 12 C 1.53777 * 113.69379 * 107.46534 * 10 9 7 13 13 C 1.53778 * 87.08221 * 139.99274 * 12 10 9 14 14 H 1.09002 * 113.68900 * 89.12517 * 13 12 10 15 15 N 1.46498 * 113.61220 * 220.02018 * 13 12 10 16 16 C 1.34777 * 119.99828 * 252.21874 * 15 13 12 17 17 O 1.21573 * 119.99937 * 0.28077 * 16 15 13 18 18 C 1.47712 * 120.00297 * 180.27851 * 16 15 13 19 19 C 1.41495 * 126.52219 * 179.71498 * 18 16 15 20 20 C 1.35364 * 105.50420 * 179.90162 * 19 18 16 21 21 N 1.35035 * 107.22797 * 0.35739 * 20 19 18 22 22 C 1.46496 * 124.88329 * 179.76833 * 21 20 19 23 23 C 1.52991 * 109.47530 * 124.97351 * 22 21 20 24 24 F 1.39907 * 109.47482 * 64.99606 * 23 22 21 25 25 F 1.39898 * 109.47514 * 184.99780 * 23 22 21 26 26 N 1.28469 * 110.22969 * 359.76342 * 21 20 19 27 27 C 1.53779 * 113.61564 * 205.00476 * 10 9 7 28 28 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00262 * 359.97438 * 9 7 2 30 30 H 1.09001 * 113.61338 * 25.44002 * 12 10 9 31 31 H 1.09000 * 113.61355 * 254.54265 * 12 10 9 32 32 H 0.97001 * 120.00384 * 72.50320 * 15 13 12 33 33 H 1.08002 * 127.24757 * 0.02562 * 19 18 16 34 34 H 1.08004 * 126.38418 * 180.08678 * 20 19 18 35 35 H 1.09010 * 109.46839 * 244.97292 * 22 21 20 36 36 H 1.09000 * 109.47330 * 4.96665 * 22 21 20 37 37 H 1.08999 * 109.47289 * 304.99834 * 23 22 21 38 38 H 1.08997 * 113.61777 * 105.38136 * 27 10 9 39 39 H 1.08999 * 113.61498 * 334.47631 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0661 -3.5639 -0.4030 12 6 2.0001 -4.4026 1.3452 13 6 1.8495 -5.6978 0.5300 14 1 2.7995 -6.1642 0.2693 15 7 0.8897 -6.6442 1.1041 16 6 1.3279 -7.7743 1.6934 17 8 2.5199 -8.0058 1.7531 18 6 0.3600 -8.7315 2.2668 19 6 0.6651 -9.9554 2.9080 20 6 -0.5286 -10.4836 3.2662 21 7 -1.4858 -9.6254 2.8532 22 6 -2.9254 -9.8230 3.0396 23 6 -3.5176 -8.6105 3.7605 24 9 -3.4018 -7.4801 2.9442 25 9 -4.8677 -8.8475 4.0400 26 7 -0.9525 -8.6106 2.2733 27 6 1.2608 -4.8290 -0.5940 28 1 -0.4850 0.8401 -0.0004 29 1 0.3557 -2.3880 0.0005 30 1 1.1219 -4.1581 1.9427 31 1 2.9284 -4.3502 1.9141 32 1 -0.0613 -6.4595 1.0564 33 1 1.6444 -10.3781 3.0778 34 1 -0.6863 -11.4193 3.7820 35 1 -3.4052 -9.9379 2.0676 36 1 -3.0948 -10.7191 3.6365 37 1 -2.9777 -8.4424 4.6924 38 1 1.5921 -5.1208 -1.5905 39 1 0.1804 -4.7011 -0.5266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022245624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:32 Heat of formation + Delta-G solvation = -45.801147 kcal Electronic energy + Delta-G solvation = -25258.566747 eV Core-core repulsion = 21066.921208 eV Total energy + Delta-G solvation = -4191.645539 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.02768 -48.04831 -43.68386 -40.93144 -39.23040 -35.79306 -35.19619 -34.22621 -31.98395 -31.59101 -30.18040 -26.74275 -26.52507 -25.64860 -24.10441 -22.84131 -22.47101 -21.26725 -20.61535 -19.27860 -19.05244 -18.66145 -18.17804 -18.02089 -17.55946 -17.04888 -16.51467 -16.22938 -16.06009 -15.62172 -15.35624 -15.03289 -14.96957 -14.69023 -14.54269 -14.38404 -14.07642 -14.02576 -13.62322 -13.33169 -13.29227 -13.16122 -12.85552 -12.27387 -12.22603 -12.19088 -12.07038 -11.89821 -11.78338 -11.53046 -11.15741 -10.87421 -10.38209 -10.14409 -9.95716 -8.99467 -7.95026 -5.23646 0.44664 1.14617 1.26083 1.48044 1.48541 1.58900 2.17413 2.32861 2.56939 2.59071 3.16330 3.24041 3.36463 3.51726 3.68154 3.73095 3.83831 3.95103 3.96904 4.02116 4.24483 4.29870 4.30305 4.36458 4.68163 4.73933 4.79028 4.87311 4.88412 5.11347 5.13816 5.29684 5.35438 5.51091 5.64957 5.77525 6.27075 6.43366 6.83132 7.14269 7.33309 8.08584 8.32250 9.28461 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.002758 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.013095 B =10150.492353 C =11655.839702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.724 5.724 10 C 0.153 3.847 11 H 0.085 0.915 12 C -0.170 4.170 13 C 0.134 3.866 14 H 0.115 0.885 15 N -0.695 5.695 16 C 0.598 3.402 17 O -0.571 6.571 18 C -0.037 4.037 19 C -0.200 4.200 20 C 0.017 3.983 21 N -0.287 5.287 22 C 0.075 3.925 23 C 0.249 3.751 24 F -0.213 7.213 25 F -0.199 7.199 26 N -0.275 5.275 27 C -0.141 4.141 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.411 0.589 33 H 0.168 0.832 34 H 0.240 0.760 35 H 0.123 0.877 36 H 0.189 0.811 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -28.898 8.995 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.362 5.362 10 C 0.042 3.958 11 H 0.103 0.897 12 C -0.212 4.212 13 C 0.029 3.971 14 H 0.132 0.868 15 N -0.345 5.345 16 C 0.384 3.616 17 O -0.449 6.449 18 C -0.197 4.197 19 C -0.228 4.228 20 C -0.125 4.125 21 N -0.076 5.076 22 C -0.045 4.045 23 C 0.195 3.805 24 F -0.194 7.194 25 F -0.181 7.181 26 N -0.111 5.111 27 C -0.181 4.181 28 H 0.060 0.940 29 H 0.207 0.793 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.186 0.814 34 H 0.256 0.744 35 H 0.141 0.859 36 H 0.206 0.794 37 H 0.149 0.851 38 H 0.104 0.896 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.411 -28.195 8.671 30.415 hybrid contribution 0.000 1.035 0.161 1.048 sum -7.411 -27.160 8.833 29.506 Atomic orbital electron populations 1.69829 1.06620 1.25989 1.59629 1.25581 0.96400 1.01147 1.03765 0.85076 0.78307 0.79814 0.76587 1.18960 1.21976 1.22222 1.19759 0.91636 0.85288 1.40840 0.90372 1.42535 1.05382 1.00884 1.87388 1.21661 0.95862 0.83993 0.94244 0.89738 1.24161 1.01221 0.96230 0.99584 1.22275 0.93591 0.86807 0.94428 0.86752 1.45862 1.11078 1.20306 1.57212 1.17314 0.86675 0.80519 0.77085 1.90747 1.16961 1.77082 1.60159 1.21938 0.90317 0.99113 1.08359 1.22079 1.00829 0.95030 1.04820 1.23620 0.85882 0.99500 1.03463 1.45492 1.08047 1.14112 1.39914 1.23350 0.74412 1.00206 1.06564 1.22303 0.79567 0.83616 0.95053 1.93066 1.95810 1.54788 1.75730 1.93025 1.36106 1.94565 1.94377 1.73647 1.09187 1.12010 1.16239 1.23679 1.00792 0.95166 0.98455 0.94037 0.79341 0.91573 0.92264 0.75283 0.81442 0.74372 0.85883 0.79410 0.85060 0.89559 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 3 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 7 C -0.24 -13.71 9.97 84.03 0.84 -12.87 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.72 -37.14 5.40 -320.45 -1.73 -38.87 16 10 C 0.15 6.14 4.48 45.52 0.20 6.34 16 11 H 0.08 3.31 8.10 -2.38 -0.02 3.29 16 12 C -0.17 -6.30 7.68 31.12 0.24 -6.06 16 13 C 0.13 4.27 4.24 45.52 0.19 4.46 16 14 H 0.11 3.64 7.46 -2.39 -0.02 3.63 16 15 N -0.70 -20.84 5.35 -443.03 -2.37 -23.21 16 16 C 0.60 18.69 7.82 86.75 0.68 19.37 16 17 O -0.57 -21.02 16.52 -3.95 -0.07 -21.08 16 18 C -0.04 -0.94 7.13 42.46 0.30 -0.64 16 19 C -0.20 -3.60 10.81 22.41 0.24 -3.36 16 20 C 0.02 0.15 11.40 83.54 0.95 1.10 16 21 N -0.29 -3.55 3.41 -347.96 -1.19 -4.74 16 22 C 0.08 0.33 6.63 86.38 0.57 0.90 16 23 C 0.25 2.54 5.48 71.98 0.39 2.93 16 24 F -0.21 -4.44 16.49 44.97 0.74 -3.69 16 25 F -0.20 -2.36 17.34 44.97 0.78 -1.58 16 26 N -0.27 -6.03 10.69 -48.18 -0.51 -6.54 16 27 C -0.14 -4.62 7.58 31.12 0.24 -4.39 16 28 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.37 20.53 7.92 -92.71 -0.73 19.79 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.41 11.62 8.45 -92.71 -0.78 10.84 16 33 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.24 -0.64 8.06 -2.91 -0.02 -0.66 16 35 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.19 -1.17 8.04 -2.39 -0.02 -1.19 16 37 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 Total: -1.00 -79.63 348.89 2.87 -76.75 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.41 Total: 30.20 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.32 Total: 3.80 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -5.52 Total: -133.22 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.07 Total: -21.08 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.52 Total: -5.27 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -79.63 2.87 -76.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022245624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.952 kcal (2) G-P(sol) polarization free energy of solvation -79.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds