Wall clock time and date at job start Fri Apr 10 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48501 * 109.46775 * 266.44641 * 3 2 1 5 5 H 1.48496 * 109.46965 * 26.44726 * 3 2 1 6 6 H 1.48506 * 109.47022 * 146.44698 * 3 2 1 7 7 C 1.38814 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00043 * 341.33543 * 7 2 1 9 9 N 1.36934 * 120.00094 * 161.33189 * 7 2 1 10 10 C 1.47430 * 125.64984 * 330.88065 * 9 7 2 11 11 C 1.54902 * 104.83428 * 155.89180 * 10 9 7 12 12 C 1.55158 * 101.58464 * 37.00833 * 11 10 9 13 13 C 1.47019 * 125.65030 * 150.90162 * 9 7 2 14 14 H 1.08997 * 110.01517 * 300.53026 * 13 9 7 15 15 C 1.53005 * 109.88130 * 61.62559 * 13 9 7 16 16 N 1.46505 * 109.46936 * 300.58190 * 15 13 9 17 17 C 1.34781 * 119.99612 * 109.47022 * 16 15 13 18 18 O 1.21627 * 120.00174 * 4.51053 * 17 16 15 19 19 C 1.47165 * 119.99373 * 184.51226 * 17 16 15 20 20 C 1.38405 * 126.87852 * 185.85529 * 19 17 16 21 21 C 1.39679 * 105.35671 * 179.97438 * 20 19 17 22 22 N 1.30862 * 107.86417 * 0.02562 * 21 20 19 23 23 N 1.28446 * 110.92495 * 359.97438 * 22 21 20 24 24 C 1.46502 * 125.19076 * 179.97438 * 23 22 21 25 25 F 1.39903 * 109.47034 * 114.11289 * 24 23 22 26 26 F 1.39902 * 109.47088 * 234.11128 * 24 23 22 27 27 H 0.97001 * 120.00112 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.36370 * 37.04856 * 10 9 7 29 29 H 1.08997 * 110.45608 * 274.78011 * 10 9 7 30 30 H 1.09005 * 111.00442 * 278.93271 * 11 10 9 31 31 H 1.08996 * 111.00590 * 155.08966 * 11 10 9 32 32 H 1.08993 * 110.72334 * 206.13528 * 12 11 10 33 33 H 1.09001 * 110.71476 * 82.86095 * 12 11 10 34 34 H 1.09000 * 109.47296 * 180.58669 * 15 13 9 35 35 H 1.09001 * 109.47269 * 60.58114 * 15 13 9 36 36 H 0.96992 * 119.99901 * 289.46922 * 16 15 13 37 37 H 1.08000 * 127.32179 * 359.96014 * 20 19 17 38 38 H 1.08000 * 126.06551 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46990 * 354.11254 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5728 2.0029 -1.3974 5 1 1.4121 2.6731 0.6235 6 1 3.5082 1.4629 0.7739 7 6 2.0102 -1.2022 0.0005 8 1 1.5128 -2.1127 0.3003 9 7 3.3255 -1.2336 -0.3790 10 6 3.9654 -0.3141 -1.3374 11 6 5.4690 -0.3373 -0.9658 12 6 5.6709 -1.8257 -0.5768 13 6 4.3334 -2.1901 0.1014 14 1 4.4339 -2.1139 1.1840 15 6 3.9254 -3.6134 -0.2842 16 7 2.6234 -3.9262 0.3103 17 6 1.5333 -4.0368 -0.4747 18 8 1.6438 -3.9586 -1.6834 19 6 0.2095 -4.2523 0.1309 20 6 -0.9788 -4.4969 -0.5352 21 6 -1.9434 -4.6308 0.4660 22 7 -1.3481 -4.4732 1.6207 23 7 -0.0928 -4.2511 1.4631 24 6 0.8680 -4.0294 2.5466 25 9 1.7847 -5.0857 2.5803 26 9 1.5493 -2.8274 2.3270 27 1 -0.4850 0.8400 -0.0004 28 1 3.5622 0.6923 -1.2247 29 1 3.8215 -0.6674 -2.3585 30 1 5.6725 0.3188 -0.1194 31 1 6.0875 -0.0700 -1.8226 32 1 6.4997 -1.9325 0.1229 33 1 5.8327 -2.4376 -1.4642 34 1 4.6714 -4.3177 0.0840 35 1 3.8572 -3.6905 -1.3694 36 1 2.5459 -4.0536 1.2686 37 1 -1.1284 -4.5688 -1.6024 38 1 -2.9941 -4.8292 0.3142 39 1 0.3377 -3.9780 3.4975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027906922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:35 Heat of formation + Delta-G solvation = -8.864478 kcal Electronic energy + Delta-G solvation = -28851.889653 eV Core-core repulsion = 24661.845808 eV Total energy + Delta-G solvation = -4190.043845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.87236 -48.67491 -43.50608 -40.74579 -39.17456 -35.66922 -34.53099 -33.85075 -32.28597 -31.68991 -30.64318 -27.49124 -26.75714 -25.69939 -23.77125 -22.97547 -22.26690 -21.67821 -21.16895 -20.15676 -19.10328 -18.87655 -18.54742 -17.94468 -17.52368 -17.01645 -16.62257 -16.31536 -15.88672 -15.53537 -15.37293 -15.16058 -15.06570 -14.92940 -14.75750 -14.59412 -14.25026 -14.13181 -13.87173 -13.50006 -13.21256 -13.08526 -12.94032 -12.45386 -12.35473 -12.16494 -12.09977 -11.56581 -11.54277 -11.25281 -11.15829 -10.60088 -10.58257 -10.26893 -9.97685 -8.70487 -8.03326 -5.34579 0.04268 0.70805 1.25431 1.33518 1.43989 1.53915 1.96583 2.28922 2.36279 2.49301 2.97907 3.14182 3.37359 3.41852 3.51437 3.88628 3.92547 4.00276 4.09734 4.16132 4.31675 4.42175 4.53898 4.63342 4.69212 4.82151 4.87932 4.96304 4.99296 5.11957 5.19745 5.31190 5.47763 5.48735 5.50613 5.95791 6.32254 6.40906 6.76664 6.93166 7.13942 7.68717 8.29660 9.14020 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.007095 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.221691 B = 3945.370161 C = 4648.741040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.042 4.042 3 Si 0.938 3.062 4 H -0.290 1.290 5 H -0.322 1.322 6 H -0.266 1.266 7 C -0.215 4.215 8 H 0.105 0.895 9 N -0.617 5.617 10 C 0.098 3.902 11 C -0.124 4.124 12 C -0.109 4.109 13 C 0.132 3.868 14 H 0.044 0.956 15 C 0.103 3.897 16 N -0.716 5.716 17 C 0.599 3.401 18 O -0.560 6.560 19 C -0.040 4.040 20 C -0.159 4.159 21 C 0.032 3.968 22 N -0.271 5.271 23 N -0.344 5.344 24 C 0.471 3.529 25 F -0.170 7.170 26 F -0.163 7.163 27 H 0.252 0.748 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.394 0.606 37 H 0.171 0.829 38 H 0.237 0.763 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -11.181 5.980 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.236 4.236 3 Si 0.773 3.227 4 H -0.219 1.219 5 H -0.252 1.252 6 H -0.191 1.191 7 C -0.344 4.344 8 H 0.122 0.878 9 N -0.342 5.342 10 C -0.026 4.026 11 C -0.163 4.163 12 C -0.147 4.147 13 C 0.025 3.975 14 H 0.062 0.938 15 C -0.022 4.022 16 N -0.373 5.373 17 C 0.385 3.615 18 O -0.437 6.437 19 C -0.164 4.164 20 C -0.188 4.188 21 C -0.149 4.149 22 N -0.100 5.100 23 N -0.142 5.142 24 C 0.338 3.662 25 F -0.151 7.151 26 F -0.145 7.145 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.188 0.812 38 H 0.254 0.746 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.975 -10.990 6.474 14.085 hybrid contribution 0.020 1.508 -0.804 1.709 sum 5.995 -9.482 5.670 12.570 Atomic orbital electron populations 1.69934 1.06672 1.25946 1.57464 1.25802 0.95783 1.00030 1.01939 0.85991 0.78283 0.81880 0.76552 1.21933 1.25198 1.19139 1.19427 0.84332 0.94638 1.36025 0.87819 1.44918 1.06517 1.35816 1.46991 1.22140 0.94283 0.93206 0.92992 1.22719 0.93835 0.97839 1.01863 1.22549 0.95447 0.95224 1.01453 1.21707 0.89433 0.89192 0.97177 0.93775 1.22203 0.83049 0.97391 0.99583 1.46212 1.08798 1.70873 1.11459 1.16845 0.82974 0.75328 0.86311 1.90723 1.85785 1.52258 1.14976 1.22078 0.97705 1.11121 0.85481 1.22561 0.90264 1.03903 1.02054 1.24361 1.02083 1.02227 0.86181 1.72973 0.89882 1.18683 1.28416 1.46878 1.07564 1.54753 1.05036 1.22031 0.79320 0.72122 0.92710 1.93015 1.68092 1.57954 1.96062 1.93267 1.80422 1.45657 1.95113 0.93906 0.96255 0.96286 0.91768 0.88489 0.87671 0.89738 0.87539 0.91270 0.76320 0.81181 0.74641 0.76330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.97 21.65 0.30 -60.87 16 2 C -0.04 -2.52 5.45 84.86 0.46 -2.06 16 3 Si 0.94 49.65 24.87 68.60 1.71 51.35 16 4 H -0.29 -15.18 6.53 99.48 0.65 -14.53 16 5 H -0.32 -17.43 7.11 99.48 0.71 -16.72 16 6 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.21 -12.06 8.81 84.03 0.74 -11.32 16 8 H 0.10 5.76 2.14 -2.91 -0.01 5.75 16 9 N -0.62 -29.47 2.79 -668.26 -1.87 -31.34 16 10 C 0.10 4.35 6.25 86.85 0.54 4.89 16 11 C -0.12 -3.93 7.08 31.98 0.23 -3.71 16 12 C -0.11 -2.93 6.48 31.78 0.21 -2.73 16 13 C 0.13 4.77 3.49 45.34 0.16 4.93 16 14 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 15 C 0.10 3.53 5.88 86.38 0.51 4.03 16 16 N -0.72 -27.47 3.44 -466.60 -1.61 -29.08 16 17 C 0.60 26.84 5.12 86.59 0.44 27.28 16 18 O -0.56 -28.81 16.28 -4.12 -0.07 -28.88 16 19 C -0.04 -1.62 6.35 40.79 0.26 -1.36 16 20 C -0.16 -5.80 10.85 22.66 0.25 -5.55 16 21 C 0.03 0.93 12.03 85.19 1.02 1.96 16 22 N -0.27 -8.73 11.90 -57.14 -0.68 -9.41 16 23 N -0.34 -12.01 3.62 -351.28 -1.27 -13.28 16 24 C 0.47 13.26 5.65 127.77 0.72 13.99 16 25 F -0.17 -4.24 15.45 44.97 0.69 -3.54 16 26 F -0.16 -6.05 12.81 44.97 0.58 -5.47 16 27 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.02 0.96 2.37 -2.39 -0.01 0.96 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.06 7.83 -2.39 -0.02 2.04 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.07 2.70 6.93 -2.39 -0.02 2.68 16 36 H 0.39 13.57 3.03 -92.71 -0.28 13.29 16 37 H 0.17 5.80 8.06 -2.91 -0.02 5.78 16 38 H 0.24 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.22 3.91 8.14 -2.39 -0.02 3.89 16 Total: -1.00 -82.66 313.05 4.11 -78.55 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.78 Total: 21.61 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: 5.54 Total: 30.36 kcal Atomic # 7 Polarization: -138.86 SS G_CDS: -5.12 Total: -143.98 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.07 Total: -28.88 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 1.27 Total: -9.02 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.71 Total: 51.35 kcal Total: -82.66 4.11 -78.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027906922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.685 kcal (2) G-P(sol) polarization free energy of solvation -82.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds