Wall clock time and date at job start Fri Apr 10 2020 18:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48500 * 109.46863 * 240.00128 * 3 2 1 5 5 H 1.48501 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46870 * 120.00274 * 3 2 1 7 7 C 1.38812 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.47432 * 125.64779 * 359.97149 * 9 7 2 11 11 C 1.54901 * 104.83094 * 155.90940 * 10 9 7 12 12 C 1.55156 * 101.58691 * 37.00621 * 11 10 9 13 13 H 1.09000 * 110.71721 * 83.03833 * 12 11 10 14 14 C 1.52997 * 110.72546 * 206.13627 * 12 11 10 15 15 N 1.46505 * 109.47212 * 182.55775 * 14 12 11 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21570 * 120.00608 * 0.02562 * 16 15 14 18 18 C 1.47712 * 119.99766 * 180.02562 * 16 15 14 19 19 C 1.41498 * 126.51929 * 179.71389 * 18 16 15 20 20 C 1.35367 * 105.50540 * 179.90117 * 19 18 16 21 21 C 1.50699 * 126.38997 * 180.08551 * 20 19 18 22 22 F 1.39893 * 109.47507 * 210.29853 * 21 20 19 23 23 F 1.39902 * 109.46971 * 330.30127 * 21 20 19 24 24 N 1.35035 * 107.22692 * 0.35947 * 20 19 18 25 25 H 0.96998 * 124.88771 * 179.76404 * 24 20 19 26 26 N 1.28467 * 110.23036 * 359.75931 * 24 20 19 27 27 C 1.47318 * 125.61431 * 180.19651 * 9 7 2 28 28 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36908 * 37.06646 * 10 9 7 30 30 H 1.08998 * 110.45389 * 274.79335 * 10 9 7 31 31 H 1.09007 * 111.00614 * 278.93244 * 11 10 9 32 32 H 1.09004 * 111.04006 * 155.09631 * 11 10 9 33 33 H 1.09002 * 109.47153 * 62.55768 * 14 12 11 34 34 H 1.09001 * 109.46832 * 302.55958 * 14 12 11 35 35 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 36 36 H 1.08000 * 127.24943 * 0.02562 * 19 18 16 37 37 H 1.09004 * 109.46823 * 90.29526 * 21 20 19 38 38 H 1.08997 * 110.06555 * 61.67733 * 27 9 7 39 39 H 1.09000 * 109.84738 * 300.41661 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9325 -0.6106 12 6 0.7785 -4.7525 -0.0253 13 1 0.5447 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 7 2.1978 -6.7208 -0.3296 16 6 2.6679 -7.8160 -0.9589 17 8 2.2007 -8.1488 -2.0307 18 6 3.7509 -8.6119 -0.3462 19 6 4.3412 -9.7821 -0.8796 20 6 5.2808 -10.1559 0.0203 21 6 6.1941 -11.3500 -0.0846 22 9 6.4988 -11.8182 1.1980 23 9 5.5574 -12.3617 -0.8113 24 7 5.2429 -9.2629 1.0324 25 1 5.8103 -9.2910 1.8187 26 7 4.3474 -8.3705 0.8042 27 6 1.9339 -3.7298 0.0052 28 1 -0.4851 0.8400 0.0004 29 1 -0.5994 -1.7591 -0.6153 30 1 -0.5289 -2.4858 1.0183 31 1 -0.3520 -3.8989 -1.6991 32 1 -1.3590 -4.3333 -0.2775 33 1 1.4510 -5.5574 -1.9069 34 1 0.2416 -6.5590 -1.0688 35 1 2.5703 -6.4555 0.5258 36 1 4.0953 -10.2725 -1.8099 37 1 7.1135 -11.0606 -0.5936 38 1 2.5277 -3.8681 0.9087 39 1 2.5624 -3.8542 -0.8766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028792883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:41 Heat of formation + Delta-G solvation = -37.393896 kcal Electronic energy + Delta-G solvation = -25152.268478 eV Core-core repulsion = 20960.987504 eV Total energy + Delta-G solvation = -4191.280974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.67142 -47.69693 -43.18096 -39.47173 -37.58911 -34.68802 -32.82799 -32.31111 -32.19962 -29.79209 -28.29574 -26.75756 -25.81530 -24.45691 -22.89879 -21.89647 -20.59410 -19.89599 -19.64008 -19.20037 -18.24205 -17.66842 -17.37911 -16.76155 -16.22812 -16.05963 -15.54148 -15.25627 -14.71209 -14.53368 -14.39443 -14.22353 -14.00025 -13.89026 -13.58848 -13.40849 -12.81489 -12.48840 -12.17009 -11.76773 -11.69658 -11.48726 -11.42080 -10.94885 -10.78544 -10.50617 -10.22404 -10.09969 -9.97929 -9.94102 -9.77995 -9.77598 -9.50944 -8.97551 -8.63871 -6.82441 -5.64365 -3.05929 1.07463 1.46657 2.12057 2.86244 3.23606 3.27052 3.40885 3.44891 3.46382 3.48913 3.85525 4.13165 4.20411 4.49382 4.83573 4.93923 5.13029 5.25050 5.27283 5.42178 5.53541 5.70284 5.79712 5.89922 6.07178 6.11774 6.30592 6.36104 6.41898 6.57532 6.60174 6.73554 6.92476 7.19399 7.52571 7.56857 7.62963 7.86723 8.14991 8.37557 9.23198 9.83936 10.49096 11.39586 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.002330 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.022740 B =12013.758789 C =12739.867616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.708 5.708 16 C 0.600 3.400 17 O -0.532 6.532 18 C -0.007 4.007 19 C -0.127 4.127 20 C -0.078 4.078 21 C 0.353 3.647 22 F -0.199 7.199 23 F -0.183 7.183 24 N -0.358 5.358 25 H 0.451 0.549 26 N -0.230 5.230 27 C 0.140 3.860 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.012 0.988 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.174 0.826 37 H 0.137 0.863 38 H 0.019 0.981 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.037 -23.011 1.373 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.359 5.359 16 C 0.383 3.617 17 O -0.407 6.407 18 C -0.167 4.167 19 C -0.155 4.155 20 C -0.204 4.204 21 C 0.297 3.703 22 F -0.180 7.180 23 F -0.164 7.164 24 N -0.075 5.075 25 H 0.297 0.703 26 N -0.067 5.067 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.243 0.757 36 H 0.191 0.809 37 H 0.154 0.846 38 H 0.037 0.963 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.592 -22.273 1.455 24.706 hybrid contribution 0.998 0.259 0.452 1.126 sum 11.590 -22.014 1.907 24.952 Atomic orbital electron populations 1.69784 1.04875 1.24877 1.57631 1.24787 0.95736 0.97705 1.02497 0.86150 0.78397 0.83064 0.77866 1.21164 1.21558 1.21270 1.19034 0.90464 0.82528 1.43070 0.90618 1.44572 1.01960 0.99690 1.86871 1.21928 0.84636 0.92520 0.98203 1.23006 0.95476 0.98554 1.00354 1.22452 0.98360 0.93948 0.98667 0.90513 1.21553 0.88976 0.91622 0.97010 1.45944 1.38528 1.26589 1.24845 1.16769 0.80615 0.80164 0.84161 1.90814 1.59006 1.69915 1.20973 1.22120 1.01802 0.99002 0.93807 1.21590 0.95775 0.96618 1.01559 1.21833 1.05728 0.98410 0.94462 1.19673 0.93487 0.80179 0.76943 1.93031 1.93860 1.89882 1.41212 1.93070 1.84393 1.61810 1.77154 1.43151 1.28032 1.17827 1.18455 0.70291 1.73678 1.02198 1.13250 1.17577 1.21391 0.93454 0.85920 0.97786 0.93679 0.87513 0.97037 0.91760 0.92069 0.90838 0.91256 0.75686 0.80891 0.84597 0.96299 0.95696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 10.09 55.49 0.56 -26.40 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.51 3.40 -169.83 -0.58 -16.09 16 10 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 11 C -0.13 -2.49 6.54 -24.59 -0.16 -2.65 16 12 C -0.11 -1.92 2.98 -88.78 -0.26 -2.18 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.13 1.95 5.00 -4.04 -0.02 1.93 16 15 N -0.71 -9.72 5.43 -61.29 -0.33 -10.05 16 16 C 0.60 8.66 7.82 -12.39 -0.10 8.56 16 17 O -0.53 -9.14 16.93 5.30 0.09 -9.05 16 18 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 19 C -0.13 -1.26 10.41 -39.36 -0.41 -1.67 16 20 C -0.08 -0.58 6.84 -82.21 -0.56 -1.14 16 21 C 0.35 1.73 5.83 36.01 0.21 1.94 16 22 F -0.20 -1.17 17.29 2.25 0.04 -1.13 16 23 F -0.18 -1.30 17.05 2.25 0.04 -1.26 16 24 N -0.36 -2.65 6.79 33.50 0.23 -2.42 16 25 H 0.45 1.82 8.96 -190.44 -1.71 0.12 16 26 N -0.23 -2.43 11.92 33.42 0.40 -2.03 16 27 C 0.14 2.88 6.67 -2.90 -0.02 2.86 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.41 5.15 8.13 -40.82 -0.33 4.81 16 36 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.14 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -33.89 340.44 -7.71 -41.61 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.08 Total: 0.79 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.18 Total: 3.80 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.28 Total: -56.99 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.89 -7.71 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028792883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.213 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds