Wall clock time and date at job start Fri Apr 10 2020 18:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48500 * 109.46863 * 240.00128 * 3 2 1 5 5 H 1.48501 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46870 * 120.00274 * 3 2 1 7 7 C 1.38812 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.47432 * 125.64779 * 359.97149 * 9 7 2 11 11 C 1.54901 * 104.83094 * 155.90940 * 10 9 7 12 12 C 1.55156 * 101.58691 * 37.00621 * 11 10 9 13 13 H 1.09000 * 110.71721 * 83.03833 * 12 11 10 14 14 C 1.52997 * 110.72546 * 206.13627 * 12 11 10 15 15 N 1.46505 * 109.47212 * 182.55775 * 14 12 11 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21570 * 120.00608 * 0.02562 * 16 15 14 18 18 C 1.47712 * 119.99766 * 180.02562 * 16 15 14 19 19 C 1.41498 * 126.51929 * 179.71389 * 18 16 15 20 20 C 1.35367 * 105.50540 * 179.90117 * 19 18 16 21 21 C 1.50699 * 126.38997 * 180.08551 * 20 19 18 22 22 F 1.39893 * 109.47507 * 210.29853 * 21 20 19 23 23 F 1.39902 * 109.46971 * 330.30127 * 21 20 19 24 24 N 1.35035 * 107.22692 * 0.35947 * 20 19 18 25 25 H 0.96998 * 124.88771 * 179.76404 * 24 20 19 26 26 N 1.28467 * 110.23036 * 359.75931 * 24 20 19 27 27 C 1.47318 * 125.61431 * 180.19651 * 9 7 2 28 28 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36908 * 37.06646 * 10 9 7 30 30 H 1.08998 * 110.45389 * 274.79335 * 10 9 7 31 31 H 1.09007 * 111.00614 * 278.93244 * 11 10 9 32 32 H 1.09004 * 111.04006 * 155.09631 * 11 10 9 33 33 H 1.09002 * 109.47153 * 62.55768 * 14 12 11 34 34 H 1.09001 * 109.46832 * 302.55958 * 14 12 11 35 35 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 36 36 H 1.08000 * 127.24943 * 0.02562 * 19 18 16 37 37 H 1.09004 * 109.46823 * 90.29526 * 21 20 19 38 38 H 1.08997 * 110.06555 * 61.67733 * 27 9 7 39 39 H 1.09000 * 109.84738 * 300.41661 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9325 -0.6106 12 6 0.7785 -4.7525 -0.0253 13 1 0.5447 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 7 2.1978 -6.7208 -0.3296 16 6 2.6679 -7.8160 -0.9589 17 8 2.2007 -8.1488 -2.0307 18 6 3.7509 -8.6119 -0.3462 19 6 4.3412 -9.7821 -0.8796 20 6 5.2808 -10.1559 0.0203 21 6 6.1941 -11.3500 -0.0846 22 9 6.4988 -11.8182 1.1980 23 9 5.5574 -12.3617 -0.8113 24 7 5.2429 -9.2629 1.0324 25 1 5.8103 -9.2910 1.8187 26 7 4.3474 -8.3705 0.8042 27 6 1.9339 -3.7298 0.0052 28 1 -0.4851 0.8400 0.0004 29 1 -0.5994 -1.7591 -0.6153 30 1 -0.5289 -2.4858 1.0183 31 1 -0.3520 -3.8989 -1.6991 32 1 -1.3590 -4.3333 -0.2775 33 1 1.4510 -5.5574 -1.9069 34 1 0.2416 -6.5590 -1.0688 35 1 2.5703 -6.4555 0.5258 36 1 4.0953 -10.2725 -1.8099 37 1 7.1135 -11.0606 -0.5936 38 1 2.5277 -3.8681 0.9087 39 1 2.5624 -3.8542 -0.8766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028792883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:41 Heat of formation + Delta-G solvation = -61.725773 kcal Electronic energy + Delta-G solvation = -25153.323587 eV Core-core repulsion = 20960.987504 eV Total energy + Delta-G solvation = -4192.336083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.10677 -48.14285 -43.90711 -40.65172 -39.19330 -36.10395 -34.39206 -33.25628 -32.99012 -31.56766 -29.89509 -27.52674 -27.20461 -25.95436 -24.18505 -22.56606 -22.15164 -21.37519 -20.85354 -19.89998 -18.89925 -18.64123 -18.19867 -18.11790 -17.36967 -16.91574 -16.75327 -16.45826 -16.34228 -15.69190 -15.56276 -15.01021 -14.94104 -14.78677 -14.46602 -14.30098 -14.26125 -13.95206 -13.53426 -13.38112 -13.13356 -12.82035 -12.66469 -12.64666 -12.14232 -12.04967 -11.94256 -11.82989 -11.59387 -11.43663 -11.21452 -10.73445 -10.72727 -10.46722 -10.12184 -8.87624 -7.76772 -5.20965 0.29854 0.68073 1.46245 1.49495 1.52566 1.55945 2.01263 2.21991 2.49977 2.63240 3.11939 3.14255 3.32324 3.51975 3.63546 3.80640 3.90803 3.98398 4.03715 4.12908 4.21959 4.46002 4.52700 4.66672 4.71080 4.80197 4.91950 5.04676 5.05545 5.14536 5.30205 5.40180 5.47920 5.67530 5.75994 5.83756 6.32102 6.33832 6.62158 7.06315 7.11939 7.79519 8.43236 9.24939 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.002330 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.022740 B =12013.758789 C =12739.867616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.094 0.906 14 C 0.142 3.858 15 N -0.704 5.704 16 C 0.600 3.400 17 O -0.566 6.566 18 C -0.033 4.033 19 C -0.145 4.145 20 C -0.059 4.059 21 C 0.356 3.644 22 F -0.202 7.202 23 F -0.196 7.196 24 N -0.340 5.340 25 H 0.467 0.533 26 N -0.240 5.240 27 C 0.137 3.863 28 H 0.247 0.753 29 H 0.072 0.928 30 H -0.010 1.010 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.414 0.586 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.026 0.974 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.749 -24.662 1.919 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.113 0.887 14 C 0.019 3.981 15 N -0.355 5.355 16 C 0.385 3.615 17 O -0.444 6.444 18 C -0.191 4.191 19 C -0.173 4.173 20 C -0.187 4.187 21 C 0.301 3.699 22 F -0.184 7.184 23 F -0.177 7.177 24 N -0.059 5.059 25 H 0.316 0.684 26 N -0.079 5.079 27 C 0.012 3.988 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.008 0.992 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.250 0.750 36 H 0.193 0.807 37 H 0.201 0.799 38 H 0.044 0.956 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 12.334 -23.950 2.032 27.016 hybrid contribution 0.533 0.721 0.339 0.958 sum 12.867 -23.229 2.371 26.661 Atomic orbital electron populations 1.70046 1.06164 1.25100 1.58559 1.25638 0.96673 1.00979 1.02766 0.85126 0.77131 0.78764 0.78151 1.20374 1.21870 1.20418 1.19415 0.90972 0.83938 1.42640 0.90363 1.44900 1.02842 1.00909 1.86834 1.21738 0.83973 0.94986 0.96645 1.22847 0.97671 0.95313 1.00168 1.22288 0.95843 0.93316 0.99950 0.88737 1.21331 0.89860 0.91113 0.95801 1.45850 1.38240 1.26380 1.24985 1.17043 0.80741 0.80022 0.83697 1.90787 1.60317 1.70812 1.22435 1.21839 1.02357 0.99997 0.94945 1.21715 0.96657 0.96426 1.02512 1.22148 1.04772 0.98555 0.93189 1.20138 0.94190 0.78657 0.76946 1.93029 1.93769 1.89835 1.41726 1.93050 1.84867 1.62329 1.77437 1.43230 1.27020 1.16891 1.18793 0.68405 1.73610 1.02885 1.14255 1.17112 1.21550 0.94766 0.84732 0.97725 0.94309 0.91019 0.99232 0.91632 0.89073 0.92134 0.89908 0.74956 0.80663 0.79911 0.95623 0.96020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.96 10.09 21.65 0.22 -56.75 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 3 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.67 10.28 84.03 0.86 -12.80 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -32.62 3.40 -691.22 -2.35 -34.97 16 10 C 0.15 7.45 5.89 86.85 0.51 7.96 16 11 C -0.12 -4.34 6.54 31.98 0.21 -4.13 16 12 C -0.09 -3.02 2.98 -9.60 -0.03 -3.05 16 13 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 14 C 0.14 4.02 5.00 86.38 0.43 4.45 16 15 N -0.70 -18.51 5.43 -466.10 -2.53 -21.04 16 16 C 0.60 16.99 7.82 86.75 0.68 17.66 16 17 O -0.57 -19.39 16.93 -3.94 -0.07 -19.45 16 18 C -0.03 -0.76 7.13 42.46 0.30 -0.46 16 19 C -0.14 -2.69 10.41 22.41 0.23 -2.46 16 20 C -0.06 -0.73 6.84 41.40 0.28 -0.45 16 21 C 0.36 2.37 5.83 71.24 0.42 2.79 16 22 F -0.20 -1.78 17.29 44.97 0.78 -1.00 16 23 F -0.20 -2.33 17.05 44.97 0.77 -1.57 16 24 N -0.34 -4.21 6.79 -47.93 -0.33 -4.54 16 25 H 0.47 2.46 8.96 -220.00 -1.97 0.49 16 26 N -0.24 -4.69 11.92 -48.18 -0.57 -5.26 16 27 C 0.14 5.55 6.67 86.67 0.58 6.13 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.07 4.05 5.88 -2.39 -0.01 4.03 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.06 2.34 8.05 -2.38 -0.02 2.32 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.06 1.90 8.00 -2.39 -0.02 1.88 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.41 9.86 8.13 -92.71 -0.75 9.11 16 36 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.18 -0.37 8.14 -2.38 -0.02 -0.39 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.02 0.90 7.73 -2.39 -0.02 0.88 16 Total: -1.00 -75.17 340.44 1.28 -73.89 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -1.61 Total: 10.48 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 4.94 Total: 12.21 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -5.56 Total: -122.56 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.07 Total: -19.45 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 1.54 Total: -2.57 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -75.17 1.28 -73.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028792883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.166 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds