Wall clock time and date at job start Fri Apr 10 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99493 * 2 1 4 4 H 1.48503 * 109.47087 * 274.98575 * 3 2 1 5 5 H 1.48498 * 109.47368 * 34.99177 * 3 2 1 6 6 H 1.48505 * 109.46939 * 154.99048 * 3 2 1 7 7 C 1.38811 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00196 * 185.06120 * 7 2 1 9 9 N 1.36939 * 119.99935 * 5.06140 * 7 2 1 10 10 C 1.47574 * 134.48930 * 173.48076 * 9 7 2 11 11 C 1.53943 * 86.11741 * 155.36035 * 10 9 7 12 12 N 1.46506 * 113.74550 * 137.95090 * 11 10 9 13 13 C 1.34773 * 120.00005 * 156.92495 * 12 11 10 14 14 O 1.21639 * 119.99975 * 359.97438 * 13 12 11 15 15 C 1.47150 * 119.99923 * 180.02562 * 13 12 11 16 16 C 1.37890 * 120.51218 * 359.97438 * 15 13 12 17 17 N 1.34158 * 122.24640 * 180.02562 * 16 15 13 18 18 H 0.97002 * 118.68231 * 179.97438 * 17 16 15 19 19 C 1.37269 * 122.62552 * 0.25856 * 17 16 15 20 20 C 1.39516 * 121.52930 * 180.30275 * 19 17 16 21 21 C 1.37756 * 118.82849 * 179.75086 * 20 19 17 22 22 N 1.32246 * 121.59496 * 359.67347 * 21 20 19 23 23 C 1.31757 * 122.17402 * 0.02562 * 22 21 20 24 24 C 1.39244 * 120.00303 * 0.02562 * 23 22 21 25 25 C 1.47253 * 120.51182 * 180.02562 * 15 13 12 26 26 O 1.21851 * 121.48110 * 359.97438 * 25 15 13 27 27 C 1.47815 * 134.45753 * 353.34990 * 9 7 2 28 28 H 0.97001 * 120.00480 * 359.97438 * 1 2 3 29 29 H 1.08999 * 113.77113 * 41.05802 * 10 9 7 30 30 H 1.09005 * 113.77306 * 269.65817 * 10 9 7 31 31 H 1.09003 * 113.74312 * 269.15349 * 11 10 9 32 32 H 0.96994 * 119.99656 * 336.92989 * 12 11 10 33 33 H 1.08003 * 118.87826 * 0.02665 * 16 15 13 34 34 H 1.08000 * 120.57929 * 359.47601 * 20 19 17 35 35 H 1.08004 * 119.19889 * 179.69872 * 21 20 19 36 36 H 1.07998 * 119.99721 * 180.02562 * 23 22 21 37 37 H 1.08998 * 113.76704 * 90.38093 * 27 9 7 38 38 H 1.08996 * 113.83395 * 318.91180 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4122 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3296 -2.3857 -0.1057 10 6 1.7288 -3.7982 -0.2583 11 6 0.3712 -4.1420 0.3809 12 7 -0.3173 -5.2632 -0.2636 13 6 -1.2386 -5.9708 0.4197 14 8 -1.4982 -5.6788 1.5717 15 6 -1.9297 -7.0972 -0.2274 16 6 -1.6432 -7.4377 -1.5326 17 7 -2.2523 -8.4573 -2.1565 18 1 -2.0111 -8.6513 -3.0758 19 6 -3.2071 -9.2332 -1.5478 20 6 -3.8217 -10.2923 -2.2166 21 6 -4.7692 -11.0380 -1.5505 22 7 -5.1014 -10.7767 -0.2974 23 6 -4.5495 -9.7934 0.3842 24 6 -3.5828 -8.9888 -0.2133 25 6 -2.9386 -7.8776 0.5084 26 8 -3.2274 -7.6162 1.6629 27 6 -0.1001 -2.7609 -0.1095 28 1 -0.4851 0.8400 0.0004 29 1 2.5861 -4.0809 0.3526 30 1 1.8198 -4.1195 -1.2959 31 1 0.4077 -4.2332 1.4665 32 1 -0.1099 -5.4963 -1.1820 33 1 -0.9032 -6.8641 -2.0709 34 1 -3.5622 -10.5205 -3.2398 35 1 -5.2523 -11.8562 -2.0641 36 1 -4.8470 -9.6115 1.4063 37 1 -0.5474 -2.7768 -1.1033 38 1 -0.7001 -2.2170 0.6200 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030379742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:44 Heat of formation + Delta-G solvation = 51.261261 kcal Electronic energy + Delta-G solvation = -24684.491274 eV Core-core repulsion = 20915.451111 eV Total energy + Delta-G solvation = -3769.040162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73544 -39.63861 -38.52216 -38.20069 -37.20071 -33.70519 -32.69748 -31.92212 -31.73672 -30.71927 -27.45451 -25.22971 -25.14692 -24.83880 -23.19804 -22.96969 -21.12988 -19.81650 -19.30008 -18.70185 -18.27337 -16.77553 -16.42543 -16.17071 -15.81122 -15.75131 -15.55412 -15.16115 -14.93660 -14.59484 -14.30246 -13.94520 -13.78844 -13.57202 -13.45282 -13.24995 -12.66256 -12.43927 -11.88166 -11.47626 -11.44281 -10.88767 -10.79943 -10.47196 -10.40728 -10.28796 -10.04819 -9.87047 -9.72553 -9.54815 -9.26009 -8.81458 -8.54588 -8.30411 -6.92393 -5.79765 -3.13208 0.17348 0.26127 1.15924 2.16704 2.52682 3.28275 3.31912 3.38874 3.43810 3.46355 3.73211 3.77308 3.90488 4.05724 4.19911 4.36482 4.44407 4.49485 4.86521 4.94339 5.08707 5.10338 5.23677 5.31477 5.45042 5.59000 5.68201 5.94646 6.03298 6.20113 6.22656 6.37073 6.39598 6.55904 6.76034 7.23737 7.36070 7.45819 7.56547 7.66952 7.88383 7.94894 8.63463 9.01126 9.67520 10.54683 11.37378 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.002510 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.479137 B =11154.129612 C =11460.785896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.095 3.905 12 N -0.719 5.719 13 C 0.569 3.431 14 O -0.513 6.513 15 C -0.301 4.301 16 C 0.198 3.802 17 N -0.595 5.595 18 H 0.425 0.575 19 C 0.224 3.776 20 C -0.224 4.224 21 C 0.148 3.852 22 N -0.510 5.510 23 C 0.196 3.804 24 C -0.241 4.241 25 C 0.436 3.564 26 O -0.437 6.437 27 C 0.156 3.844 28 H 0.255 0.745 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.387 0.613 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.176 0.824 37 H 0.030 0.970 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 -24.258 -11.171 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.010 4.010 12 N -0.371 5.371 13 C 0.355 3.645 14 O -0.387 6.387 15 C -0.314 4.314 16 C 0.067 3.933 17 N -0.204 5.204 18 H 0.262 0.738 19 C 0.114 3.886 20 C -0.247 4.247 21 C -0.006 4.006 22 N -0.220 5.220 23 C 0.036 3.964 24 C -0.248 4.248 25 C 0.314 3.686 26 O -0.312 6.312 27 C 0.030 3.970 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.221 0.779 33 H 0.190 0.810 34 H 0.164 0.836 35 H 0.182 0.818 36 H 0.193 0.807 37 H 0.047 0.953 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.164 -24.044 -9.197 26.721 hybrid contribution 1.387 1.308 -1.819 2.635 sum -5.777 -22.736 -11.016 25.916 Atomic orbital electron populations 1.69851 1.05085 1.25559 1.55677 1.24862 0.95693 0.97680 1.02013 0.86098 0.78758 0.83437 0.77462 1.21611 1.21611 1.20465 1.18976 0.90716 0.81675 1.44101 0.90016 1.45701 1.02456 1.00535 1.84683 1.22868 0.94799 0.86821 0.96951 1.23920 0.93071 0.85117 0.98905 1.46049 1.41435 1.33783 1.15872 1.17362 0.79632 0.81262 0.86217 1.90876 1.63238 1.68012 1.16617 1.22248 1.08716 1.05427 0.94972 1.22119 0.91919 0.86085 0.93138 1.40722 1.35163 1.28008 1.16515 0.73819 1.17992 0.88344 0.90507 0.91801 1.21698 1.02622 0.98005 1.02403 1.22771 0.91465 0.96336 0.90038 1.67889 1.27269 1.18419 1.08394 1.23020 0.87278 0.86365 0.99687 1.21297 1.05217 1.03863 0.94389 1.19186 0.80681 0.81546 0.87168 1.90786 1.58564 1.65407 1.16405 1.22664 0.88002 0.88153 0.98175 0.93489 0.93240 0.94923 0.87006 0.77887 0.81043 0.83580 0.81824 0.80718 0.95252 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 11.51 55.49 0.64 -26.87 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.36 10.70 -15.06 -0.16 -6.52 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.48 3.70 -177.90 -0.66 -16.14 16 10 C 0.11 2.18 8.69 -2.97 -0.03 2.16 16 11 C 0.09 1.83 4.40 -70.15 -0.31 1.52 16 12 N -0.72 -10.72 5.32 -56.51 -0.30 -11.02 16 13 C 0.57 9.65 7.76 -12.64 -0.10 9.56 16 14 O -0.51 -11.51 15.18 -14.86 -0.23 -11.74 16 15 C -0.30 -3.87 6.04 -102.75 -0.62 -4.49 16 16 C 0.20 1.35 10.65 -16.66 -0.18 1.18 16 17 N -0.60 -2.70 5.21 -10.38 -0.05 -2.75 16 18 H 0.42 0.12 8.76 -40.82 -0.36 -0.24 16 19 C 0.22 1.60 6.68 -83.99 -0.56 1.04 16 20 C -0.22 -1.07 9.99 -39.28 -0.39 -1.47 16 21 C 0.15 0.90 11.13 -17.55 -0.20 0.71 16 22 N -0.51 -4.78 10.34 -13.05 -0.13 -4.91 16 23 C 0.20 2.05 10.86 -17.21 -0.19 1.86 16 24 C -0.24 -2.61 5.89 -104.86 -0.62 -3.23 16 25 C 0.44 6.38 7.15 -32.22 -0.23 6.15 16 26 O -0.44 -8.26 15.92 -15.05 -0.24 -8.50 16 27 C 0.16 3.74 7.24 -2.84 -0.02 3.72 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 31 H 0.11 2.41 7.50 -51.93 -0.39 2.02 16 32 H 0.39 4.07 6.72 -40.82 -0.27 3.79 16 33 H 0.17 0.54 6.30 -52.48 -0.33 0.21 16 34 H 0.15 0.16 8.06 -52.49 -0.42 -0.26 16 35 H 0.16 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.18 1.76 7.83 -52.49 -0.41 1.35 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 2.02 7.37 -51.93 -0.38 1.64 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -40.48 331.88 -8.49 -48.97 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.80 Total: -1.09 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -3.69 Total: 11.93 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.51 Total: -61.69 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.47 Total: -20.23 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -40.48 -8.49 -48.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030379742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.234 kcal (2) G-P(sol) polarization free energy of solvation -40.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds