Wall clock time and date at job start Fri Apr 10 2020 18:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48492 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47193 * 300.00043 * 3 2 1 6 6 H 1.48502 * 109.46888 * 59.99809 * 3 2 1 7 7 C 1.38807 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00130 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.47579 * 134.49258 * 180.02562 * 9 7 2 11 11 C 1.53949 * 86.11857 * 155.35313 * 10 9 7 12 12 N 1.46497 * 113.74097 * 137.95317 * 11 10 9 13 13 C 1.34774 * 119.99973 * 156.92533 * 12 11 10 14 14 O 1.21583 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.47637 * 120.00310 * 179.97438 * 13 12 11 16 16 C 1.39626 * 120.18306 * 354.05843 * 15 13 12 17 17 C 1.37864 * 119.91196 * 179.78841 * 16 15 13 18 18 C 1.38505 * 120.30321 * 0.49228 * 17 16 15 19 19 C 1.38108 * 120.37605 * 359.73208 * 18 17 16 20 20 C 1.38711 * 120.08308 * 0.03464 * 19 18 17 21 21 N 1.39846 * 120.15278 * 179.97438 * 20 19 18 22 22 C 1.35144 * 127.39707 * 302.72442 * 21 20 19 23 23 N 1.30715 * 107.26394 * 180.02562 * 22 21 20 24 24 N 1.28415 * 110.65599 * 359.97438 * 23 22 21 25 25 N 1.28949 * 110.22057 * 359.71226 * 24 23 22 26 26 C 1.47811 * 134.45788 * 359.85458 * 9 7 2 27 27 H 0.96996 * 120.00459 * 359.97438 * 1 2 3 28 28 H 1.08999 * 113.77337 * 41.04913 * 10 9 7 29 29 H 1.09001 * 113.77052 * 269.65416 * 10 9 7 30 30 H 1.08997 * 113.74029 * 269.15140 * 11 10 9 31 31 H 0.96997 * 120.00146 * 337.19708 * 12 11 10 32 32 H 1.08000 * 120.04379 * 0.02562 * 16 15 13 33 33 H 1.08005 * 119.85059 * 180.22528 * 17 16 15 34 34 H 1.07998 * 119.80986 * 179.76787 * 18 17 16 35 35 H 1.07999 * 119.95950 * 180.02562 * 19 18 17 36 36 H 1.08004 * 126.36743 * 359.97438 * 22 21 20 37 37 H 1.09006 * 113.76741 * 90.38864 * 26 9 7 38 38 H 1.08998 * 113.83964 * 318.92772 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.7202 -3.8100 0.0015 11 6 0.3467 -4.0826 0.6411 12 7 -0.3332 -5.2613 0.0983 13 6 -1.2736 -5.8927 0.8286 14 8 -1.5573 -5.4844 1.9381 15 6 -1.9592 -7.0802 0.2815 16 6 -1.7279 -7.4793 -1.0364 17 6 -2.3678 -8.5917 -1.5402 18 6 -3.2478 -9.3103 -0.7482 19 6 -3.4893 -8.9238 0.5555 20 6 -2.8504 -7.8099 1.0801 21 7 -3.0942 -7.4169 2.3999 22 6 -4.2858 -7.1075 2.9574 23 7 -4.0603 -6.7950 4.2064 24 7 -2.8083 -6.8861 4.4772 25 7 -2.1529 -7.2649 3.4333 26 6 -0.1057 -2.7571 0.0027 27 1 -0.4850 0.8400 0.0004 28 1 2.5621 -4.0320 0.6573 29 1 1.8327 -4.2355 -0.9958 30 1 0.3584 -4.0631 1.7308 31 1 -0.1038 -5.5896 -0.7851 32 1 -1.0456 -6.9196 -1.6590 33 1 -2.1853 -8.9016 -2.5586 34 1 -3.7477 -10.1783 -1.1522 35 1 -4.1765 -9.4893 1.1673 36 1 -5.2458 -7.1160 2.4626 37 1 -0.5312 -2.8723 -0.9942 38 1 -0.7187 -2.1399 0.6595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031375461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:19 Heat of formation + Delta-G solvation = 195.717799 kcal Electronic energy + Delta-G solvation = -25299.299088 eV Core-core repulsion = 21568.815782 eV Total energy + Delta-G solvation = -3730.483306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.03578 -40.49953 -38.91484 -37.45186 -35.27325 -33.70760 -32.25445 -32.05948 -31.29703 -30.45604 -27.53785 -25.37352 -24.90021 -24.42254 -23.32824 -22.61290 -22.13745 -20.57155 -19.83277 -18.75857 -17.60674 -16.86828 -16.64550 -16.16400 -15.96380 -15.48224 -15.18735 -15.01913 -14.88002 -14.67116 -13.86931 -13.79805 -13.63756 -12.94795 -12.78463 -12.68769 -12.26384 -12.04448 -11.96842 -11.53285 -11.50380 -11.15299 -10.92841 -10.91208 -10.83746 -10.51046 -10.34932 -10.05014 -9.72566 -9.62559 -9.58850 -9.32593 -8.85773 -8.55628 -6.97259 -5.81440 -3.15848 0.13318 0.50441 1.21979 1.81187 2.42369 2.63038 3.17592 3.37689 3.39671 3.42706 3.45513 4.04384 4.15288 4.26563 4.39838 4.46987 4.59169 4.70644 4.79759 4.91484 5.06802 5.21029 5.26948 5.43231 5.49826 5.50917 5.58556 5.65154 5.77635 5.95116 6.00494 6.13515 6.31883 6.45151 6.48837 6.61938 7.17167 7.27220 7.49300 7.69015 7.91837 8.32748 8.54436 8.98445 9.65012 10.50103 11.35368 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.003342 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.124885 B = 8375.512989 C = 9401.467972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.093 3.907 12 N -0.704 5.704 13 C 0.546 3.454 14 O -0.519 6.519 15 C -0.103 4.103 16 C -0.075 4.075 17 C -0.107 4.107 18 C -0.085 4.085 19 C -0.111 4.111 20 C 0.170 3.830 21 N -0.330 5.330 22 C 0.227 3.773 23 N -0.335 5.335 24 N -0.046 5.046 25 N -0.023 5.023 26 C 0.155 3.845 27 H 0.255 0.745 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.395 0.605 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.233 0.767 37 H 0.028 0.972 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 -22.901 -5.947 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.354 4.354 8 H 0.101 0.899 9 N -0.332 5.332 10 C -0.013 4.013 11 C -0.012 4.012 12 N -0.355 5.355 13 C 0.331 3.669 14 O -0.395 6.395 15 C -0.108 4.108 16 C -0.094 4.094 17 C -0.125 4.125 18 C -0.104 4.104 19 C -0.132 4.132 20 C 0.078 3.922 21 N -0.123 5.123 22 C -0.071 4.071 23 N -0.183 5.183 24 N -0.042 5.042 25 N -0.009 5.009 26 C 0.029 3.971 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.230 0.770 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.249 0.751 37 H 0.046 0.954 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.671 -21.961 -3.906 23.932 hybrid contribution 0.100 0.705 -1.677 1.822 sum -8.571 -21.256 -5.583 23.589 Atomic orbital electron populations 1.69835 1.05093 1.25461 1.56091 1.24826 0.95696 0.97704 1.02018 0.86010 0.78725 0.83461 0.77327 1.20353 1.21672 1.21542 1.19032 0.90301 0.81528 1.44540 0.89912 1.45694 1.02322 0.99167 1.86049 1.22865 0.94566 0.86893 0.97014 1.24007 0.93375 0.83687 1.00129 1.46049 1.39132 1.30675 1.19655 1.18000 0.80643 0.82761 0.85469 1.90865 1.63664 1.65969 1.19047 1.20244 0.99200 0.96864 0.94506 1.21400 0.98425 0.96343 0.93214 1.21340 0.95817 0.94621 1.00748 1.21234 0.97017 0.99566 0.92563 1.21106 1.00851 0.94341 0.96901 1.17285 0.99536 0.95360 0.80065 1.48602 1.06553 1.47765 1.09332 1.27328 0.92613 0.96126 0.91039 1.74358 1.09604 1.21516 1.12778 1.78012 0.97983 1.10260 1.17903 1.82734 1.12195 1.16152 0.89785 1.22696 0.88267 0.89015 0.97123 0.93536 0.93066 0.94725 0.86973 0.77037 0.84024 0.84189 0.84096 0.84248 0.75108 0.95402 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.65 11.39 55.49 0.63 -27.01 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.39 10.70 -15.06 -0.16 -6.55 16 8 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 9 N -0.61 -15.55 3.70 -177.88 -0.66 -16.21 16 10 C 0.11 2.25 8.69 -2.97 -0.03 2.22 16 11 C 0.09 1.81 4.40 -70.15 -0.31 1.50 16 12 N -0.70 -10.61 5.32 -56.36 -0.30 -10.91 16 13 C 0.55 8.68 7.73 -12.42 -0.10 8.59 16 14 O -0.52 -10.53 12.82 5.29 0.07 -10.47 16 15 C -0.10 -1.18 5.89 -104.82 -0.62 -1.79 16 16 C -0.07 -0.56 9.52 -39.20 -0.37 -0.93 16 17 C -0.11 -0.53 10.02 -39.62 -0.40 -0.93 16 18 C -0.08 -0.38 10.03 -39.53 -0.40 -0.78 16 19 C -0.11 -0.72 9.81 -39.45 -0.39 -1.11 16 20 C 0.17 1.82 6.24 -83.31 -0.52 1.30 16 21 N -0.33 -4.43 2.61 -11.53 -0.03 -4.46 16 22 C 0.23 2.64 12.68 -90.10 -1.14 1.50 16 23 N -0.34 -5.22 12.15 29.65 0.36 -4.86 16 24 N -0.05 -0.84 13.39 60.35 0.81 -0.03 16 25 N -0.02 -0.41 11.43 60.35 0.69 0.28 16 26 C 0.16 3.72 7.32 -2.85 -0.02 3.70 16 27 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.62 8.11 -51.93 -0.42 0.19 16 30 H 0.11 2.47 7.50 -51.93 -0.39 2.08 16 31 H 0.39 4.53 6.78 -40.82 -0.28 4.25 16 32 H 0.14 0.82 6.45 -52.49 -0.34 0.48 16 33 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 34 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.23 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 2.13 7.16 -51.93 -0.37 1.76 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -38.34 332.88 -6.86 -45.20 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.88 Total: -0.27 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -4.54 Total: 6.46 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: 1.50 Total: -63.21 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -38.34 -6.86 -45.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031375461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.915 kcal (2) G-P(sol) polarization free energy of solvation -38.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds