Wall clock time and date at job start Fri Apr 10 2020 18:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48503 * 109.46992 * 274.98344 * 3 2 1 5 5 H 1.48497 * 109.47006 * 34.98066 * 3 2 1 6 6 H 1.48494 * 109.47432 * 154.98195 * 3 2 1 7 7 C 1.38815 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99711 * 172.43763 * 7 2 1 9 9 N 1.36943 * 120.00200 * 352.43236 * 7 2 1 10 10 C 1.47870 * 126.94315 * 352.99543 * 9 7 2 11 11 C 1.56013 * 105.10457 * 182.01930 * 10 9 7 12 12 H 1.09000 * 116.24698 * 158.83536 * 11 10 9 13 13 C 1.57086 * 99.60347 * 32.80775 * 11 10 9 14 14 C 1.49286 * 126.94703 * 173.01899 * 9 7 2 15 15 H 1.08999 * 116.14727 * 15.82481 * 14 9 7 16 16 C 1.56017 * 104.09483 * 246.68114 * 14 9 7 17 17 N 1.47873 * 105.10278 * 288.76689 * 16 14 9 18 18 C 1.34769 * 126.94651 * 181.99985 * 17 16 14 19 19 O 1.21629 * 120.00370 * 185.94340 * 18 17 16 20 20 C 1.47318 * 120.00071 * 5.94530 * 18 17 16 21 21 C 1.39010 * 120.90215 * 317.54562 * 20 18 17 22 22 C 1.39714 * 119.29042 * 179.97438 * 21 20 18 23 23 C 1.35262 * 121.08471 * 359.97438 * 22 21 20 24 24 N 1.35713 * 121.56742 * 0.02562 * 23 22 21 25 25 N 1.40211 * 134.08948 * 180.02562 * 24 23 22 26 26 N 1.29015 * 106.96629 * 179.97438 * 25 24 23 27 27 N 1.28595 * 110.78287 * 359.97438 * 26 25 24 28 28 C 1.32045 * 110.21617 * 359.76306 * 27 26 25 29 29 H 0.96996 * 120.00311 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.31478 * 300.93153 * 10 9 7 31 31 H 1.09002 * 110.31551 * 63.11211 * 10 9 7 32 32 H 1.09012 * 112.36363 * 191.71182 * 13 11 10 33 33 H 1.08995 * 112.37130 * 64.27850 * 13 11 10 34 34 H 1.08995 * 110.31417 * 47.66994 * 16 14 9 35 35 H 1.08999 * 110.31646 * 169.86131 * 16 14 9 36 36 H 1.07998 * 120.35248 * 359.95942 * 21 20 18 37 37 H 1.08003 * 119.46087 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.21726 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0832 -1.2063 -0.1226 9 7 1.3345 -2.3829 0.1572 10 6 -0.0990 -2.5506 0.4788 11 6 -0.3135 -4.0920 0.5884 12 1 -1.1858 -4.4182 1.1548 13 6 1.0892 -4.5120 1.1573 14 6 1.8963 -3.7609 0.0385 15 1 2.9829 -3.8410 0.0695 16 6 1.1970 -4.3486 -1.2263 17 7 -0.2068 -4.5750 -0.8202 18 6 -1.1909 -5.1092 -1.5701 19 8 -2.3305 -5.1392 -1.1462 20 6 -0.8863 -5.6571 -2.9033 21 6 -0.0328 -4.9873 -3.7724 22 6 0.2331 -5.5377 -5.0287 23 6 -0.3255 -6.7090 -5.4104 24 7 -1.1641 -7.3957 -4.5937 25 7 -1.8723 -8.6000 -4.7123 26 7 -2.5198 -8.7662 -3.6089 27 7 -2.2976 -7.7929 -2.7984 28 6 -1.4683 -6.9234 -3.3459 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3331 -2.0675 1.4274 31 1 -0.7166 -2.1383 -0.3192 32 1 1.2431 -5.5908 1.1266 33 1 1.2744 -4.1008 2.1495 34 1 1.2425 -3.6357 -2.0495 35 1 1.6643 -5.2905 -1.5139 36 1 0.4197 -4.0514 -3.4797 37 1 0.8961 -5.0199 -5.7060 38 1 -0.0987 -7.1073 -6.3883 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032423611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:25 Heat of formation + Delta-G solvation = 191.276516 kcal Electronic energy + Delta-G solvation = -26127.434682 eV Core-core repulsion = 22396.758788 eV Total energy + Delta-G solvation = -3730.675894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.48932 -40.34944 -38.83261 -37.78303 -34.26082 -33.63853 -32.22775 -31.80437 -30.59283 -29.07431 -28.66305 -25.82313 -25.23688 -24.49844 -23.85189 -23.09633 -20.98468 -20.04504 -19.21420 -18.68011 -17.78728 -17.41782 -17.00144 -16.39755 -16.06782 -15.87756 -15.25341 -14.65339 -14.07399 -13.87420 -13.71727 -13.52345 -13.26766 -12.94088 -12.66782 -12.62953 -12.24446 -12.01917 -11.77718 -11.59425 -11.46149 -11.13082 -11.08437 -10.95016 -10.88719 -10.72351 -10.44493 -10.33532 -10.15516 -9.81555 -9.70592 -8.84553 -8.81578 -8.15670 -7.02382 -5.86483 -3.23203 -0.14817 0.28797 1.41921 1.98151 2.45394 2.92234 3.20863 3.29815 3.36323 3.38782 3.39762 3.78029 4.15237 4.29745 4.32937 4.50266 4.85113 4.92933 5.03822 5.07052 5.20421 5.26112 5.27744 5.42483 5.46301 5.51022 5.65650 5.67402 5.77836 5.99421 6.07219 6.15103 6.29106 6.33322 6.47068 6.53646 7.22713 7.43574 7.62919 7.84127 8.00528 8.21644 8.32600 8.98889 9.60983 10.29424 11.24418 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.003802 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.917830 B = 7362.486847 C = 7862.309898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.596 5.596 10 C 0.167 3.833 11 C 0.103 3.897 12 H 0.118 0.882 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.109 0.891 16 C 0.076 3.924 17 N -0.596 5.596 18 C 0.578 3.422 19 O -0.518 6.518 20 C -0.081 4.081 21 C -0.029 4.029 22 C -0.133 4.133 23 C 0.114 3.886 24 N -0.306 5.306 25 N -0.113 5.113 26 N -0.010 5.010 27 N -0.301 5.301 28 C 0.272 3.728 29 H 0.255 0.745 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.172 0.828 37 H 0.175 0.825 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 -10.380 -9.284 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.320 5.320 10 C 0.042 3.958 11 C 0.001 3.999 12 H 0.135 0.865 13 C -0.191 4.191 14 C 0.032 3.968 15 H 0.127 0.873 16 C -0.049 4.049 17 N -0.330 5.330 18 C 0.364 3.636 19 O -0.394 6.394 20 C -0.090 4.090 21 C -0.054 4.054 22 C -0.157 4.157 23 C -0.013 4.013 24 N -0.086 5.086 25 N -0.096 5.096 26 N -0.003 5.003 27 N -0.159 5.159 28 C 0.014 3.986 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.189 0.811 37 H 0.193 0.807 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.734 -11.543 -9.055 15.139 hybrid contribution 0.953 1.656 -0.511 1.978 sum 4.686 -9.888 -9.566 14.534 Atomic orbital electron populations 1.69924 1.04997 1.25478 1.55621 1.24835 0.95594 0.97795 1.01772 0.86135 0.78729 0.83537 0.77500 1.21624 1.21625 1.20557 1.19020 0.90859 0.82253 1.44281 0.90166 1.45262 1.05559 0.99244 1.81902 1.22010 0.85886 0.87307 1.00571 1.24349 0.97974 0.97526 0.80014 0.86455 1.24180 0.95881 0.99151 0.99929 1.23200 0.96586 0.86346 0.90622 0.87338 1.23564 0.81210 0.98926 1.01234 1.49034 1.09974 1.59218 1.14746 1.16944 0.84746 0.78881 0.83013 1.90866 1.19620 1.57370 1.71574 1.20335 0.99572 0.91214 0.97929 1.22345 0.91450 0.99721 0.91887 1.21082 1.02001 0.94701 0.97886 1.21729 0.90486 0.92517 0.96604 1.48917 1.30273 1.16766 1.12606 1.82764 1.11623 0.96703 1.18513 1.77995 1.11690 1.15223 0.95428 1.75199 1.16677 1.00433 1.23575 1.23607 0.95212 0.96175 0.83634 0.93490 0.93847 0.91647 0.91454 0.89498 0.90629 0.92645 0.81051 0.80749 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.20 10.73 55.49 0.60 -24.61 16 2 C 0.00 -0.06 5.45 -17.43 -0.10 -0.16 16 3 Si 0.91 20.44 29.56 -169.99 -5.02 15.42 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.24 -5.79 10.35 -15.06 -0.16 -5.95 16 8 H 0.08 1.87 7.84 -52.49 -0.41 1.46 16 9 N -0.60 -13.02 3.02 -156.35 -0.47 -13.49 16 10 C 0.17 3.71 4.82 -1.68 -0.01 3.70 16 11 C 0.10 1.86 5.23 -62.55 -0.33 1.53 16 12 H 0.12 2.08 8.11 -51.93 -0.42 1.66 16 13 C -0.15 -2.33 6.81 -22.30 -0.15 -2.48 16 14 C 0.14 2.31 5.53 -62.56 -0.35 1.97 16 15 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.08 1.10 4.90 -1.67 -0.01 1.09 16 17 N -0.60 -10.15 2.95 -158.07 -0.47 -10.61 16 18 C 0.58 10.43 7.54 -12.57 -0.09 10.34 16 19 O -0.52 -11.34 17.40 5.25 0.09 -11.25 16 20 C -0.08 -1.18 5.71 -102.71 -0.59 -1.76 16 21 C -0.03 -0.29 8.71 -38.74 -0.34 -0.62 16 22 C -0.13 -0.84 9.92 -40.09 -0.40 -1.24 16 23 C 0.11 0.85 11.15 -16.90 -0.19 0.66 16 24 N -0.31 -3.88 3.94 -10.99 -0.04 -3.92 16 25 N -0.11 -1.67 13.99 60.35 0.84 -0.82 16 26 N -0.01 -0.18 13.36 60.35 0.81 0.63 16 27 N -0.30 -5.49 12.24 32.20 0.39 -5.09 16 28 C 0.27 4.24 7.96 -154.52 -1.23 3.01 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.04 1.06 7.99 -51.93 -0.42 0.65 16 31 H 0.07 1.69 7.18 -51.93 -0.37 1.32 16 32 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.12 6.10 -51.93 -0.32 0.80 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.17 1.65 5.60 -52.49 -0.29 1.36 16 37 H 0.18 0.37 8.06 -52.48 -0.42 -0.05 16 38 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 322.41 15.07 4.86 4.86 Total: -1.00 -33.89 322.41 -6.24 -40.14 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.90 Total: -1.34 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -3.93 Total: 10.09 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 1.66 Total: -57.91 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.89 -6.24 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032423611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.414 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds