Wall clock time and date at job start Fri Apr 10 2020 18:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48503 * 109.46992 * 274.98344 * 3 2 1 5 5 H 1.48497 * 109.47006 * 34.98066 * 3 2 1 6 6 H 1.48494 * 109.47432 * 154.98195 * 3 2 1 7 7 C 1.38815 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99711 * 172.43763 * 7 2 1 9 9 N 1.36943 * 120.00200 * 352.43236 * 7 2 1 10 10 C 1.47870 * 126.94315 * 352.99543 * 9 7 2 11 11 C 1.56013 * 105.10457 * 182.01930 * 10 9 7 12 12 H 1.09000 * 116.24698 * 158.83536 * 11 10 9 13 13 C 1.57086 * 99.60347 * 32.80775 * 11 10 9 14 14 C 1.49286 * 126.94703 * 173.01899 * 9 7 2 15 15 H 1.08999 * 116.14727 * 15.82481 * 14 9 7 16 16 C 1.56017 * 104.09483 * 246.68114 * 14 9 7 17 17 N 1.47873 * 105.10278 * 288.76689 * 16 14 9 18 18 C 1.34769 * 126.94651 * 181.99985 * 17 16 14 19 19 O 1.21629 * 120.00370 * 185.94340 * 18 17 16 20 20 C 1.47318 * 120.00071 * 5.94530 * 18 17 16 21 21 C 1.39010 * 120.90215 * 317.54562 * 20 18 17 22 22 C 1.39714 * 119.29042 * 179.97438 * 21 20 18 23 23 C 1.35262 * 121.08471 * 359.97438 * 22 21 20 24 24 N 1.35713 * 121.56742 * 0.02562 * 23 22 21 25 25 N 1.40211 * 134.08948 * 180.02562 * 24 23 22 26 26 N 1.29015 * 106.96629 * 179.97438 * 25 24 23 27 27 N 1.28595 * 110.78287 * 359.97438 * 26 25 24 28 28 C 1.32045 * 110.21617 * 359.76306 * 27 26 25 29 29 H 0.96996 * 120.00311 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.31478 * 300.93153 * 10 9 7 31 31 H 1.09002 * 110.31551 * 63.11211 * 10 9 7 32 32 H 1.09012 * 112.36363 * 191.71182 * 13 11 10 33 33 H 1.08995 * 112.37130 * 64.27850 * 13 11 10 34 34 H 1.08995 * 110.31417 * 47.66994 * 16 14 9 35 35 H 1.08999 * 110.31646 * 169.86131 * 16 14 9 36 36 H 1.07998 * 120.35248 * 359.95942 * 21 20 18 37 37 H 1.08003 * 119.46087 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.21726 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0832 -1.2063 -0.1226 9 7 1.3345 -2.3829 0.1572 10 6 -0.0990 -2.5506 0.4788 11 6 -0.3135 -4.0920 0.5884 12 1 -1.1858 -4.4182 1.1548 13 6 1.0892 -4.5120 1.1573 14 6 1.8963 -3.7609 0.0385 15 1 2.9829 -3.8410 0.0695 16 6 1.1970 -4.3486 -1.2263 17 7 -0.2068 -4.5750 -0.8202 18 6 -1.1909 -5.1092 -1.5701 19 8 -2.3305 -5.1392 -1.1462 20 6 -0.8863 -5.6571 -2.9033 21 6 -0.0328 -4.9873 -3.7724 22 6 0.2331 -5.5377 -5.0287 23 6 -0.3255 -6.7090 -5.4104 24 7 -1.1641 -7.3957 -4.5937 25 7 -1.8723 -8.6000 -4.7123 26 7 -2.5198 -8.7662 -3.6089 27 7 -2.2976 -7.7929 -2.7984 28 6 -1.4683 -6.9234 -3.3459 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3331 -2.0675 1.4274 31 1 -0.7166 -2.1383 -0.3192 32 1 1.2431 -5.5908 1.1266 33 1 1.2744 -4.1008 2.1495 34 1 1.2425 -3.6357 -2.0495 35 1 1.6643 -5.2905 -1.5139 36 1 0.4197 -4.0514 -3.4797 37 1 0.8961 -5.0199 -5.7060 38 1 -0.0987 -7.1073 -6.3883 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032423611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:24 Heat of formation + Delta-G solvation = 167.030420 kcal Electronic energy + Delta-G solvation = -26128.486071 eV Core-core repulsion = 22396.758788 eV Total energy + Delta-G solvation = -3731.727284 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.52310 -41.71816 -39.89290 -39.09497 -35.57945 -35.06404 -33.40405 -33.11826 -31.74097 -30.50137 -30.22157 -27.05984 -26.65538 -25.51174 -25.13882 -24.36283 -22.31163 -21.44809 -20.43975 -19.96747 -18.92710 -18.65387 -18.09953 -17.82322 -17.30910 -16.86729 -16.66366 -16.15205 -15.68251 -15.16184 -14.86622 -14.80850 -14.22196 -14.02116 -13.90530 -13.72562 -13.66737 -13.37660 -13.24084 -13.00038 -12.85202 -12.68421 -12.62452 -12.26916 -12.22781 -12.12844 -12.01761 -11.80516 -11.49117 -11.31103 -11.19892 -10.69719 -9.81386 -9.53615 -8.85620 -7.79609 -5.16532 -1.01978 -0.63958 0.52020 0.92481 1.42127 1.51421 1.54254 1.62221 1.74077 2.08108 2.43481 2.52990 2.78572 3.26368 3.38273 3.44983 3.57103 3.63558 3.78270 3.88525 3.98978 4.03699 4.15188 4.22527 4.31687 4.46304 4.60160 4.69965 4.76819 4.82055 4.88926 5.01818 5.03637 5.16731 5.23867 5.33410 5.44023 5.60650 5.71406 6.14344 6.51852 6.98389 7.06370 7.12437 7.75964 8.46241 9.30668 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.003802 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.917830 B = 7362.486847 C = 7862.309898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.308 1.308 6 H -0.264 1.264 7 C -0.226 4.226 8 H 0.099 0.901 9 N -0.612 5.612 10 C 0.181 3.819 11 C 0.101 3.899 12 H 0.110 0.890 13 C -0.132 4.132 14 C 0.139 3.861 15 H 0.142 0.858 16 C 0.081 3.919 17 N -0.597 5.597 18 C 0.574 3.426 19 O -0.575 6.575 20 C -0.122 4.122 21 C 0.005 3.995 22 C -0.109 4.109 23 C 0.122 3.878 24 N -0.301 5.301 25 N -0.116 5.116 26 N -0.034 5.034 27 N -0.353 5.353 28 C 0.257 3.743 29 H 0.242 0.758 30 H 0.004 0.996 31 H 0.019 0.981 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.236 0.764 38 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 -11.285 -12.233 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.259 4.259 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.236 1.236 6 H -0.188 1.188 7 C -0.354 4.354 8 H 0.116 0.884 9 N -0.337 5.337 10 C 0.055 3.945 11 C -0.002 4.002 12 H 0.128 0.872 13 C -0.171 4.171 14 C 0.032 3.968 15 H 0.160 0.840 16 C -0.042 4.042 17 N -0.330 5.330 18 C 0.362 3.638 19 O -0.455 6.455 20 C -0.132 4.132 21 C -0.020 4.020 22 C -0.131 4.131 23 C -0.003 4.003 24 N -0.081 5.081 25 N -0.099 5.099 26 N -0.027 5.027 27 N -0.212 5.212 28 C 0.000 4.000 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.037 0.963 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.197 0.803 37 H 0.252 0.748 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.976 -12.493 -12.024 19.086 hybrid contribution -0.205 1.975 0.280 2.005 sum 7.771 -10.518 -11.744 17.576 Atomic orbital electron populations 1.70166 1.06646 1.25036 1.58477 1.25595 0.96136 1.00996 1.03213 0.85165 0.77954 0.79729 0.77069 1.21481 1.23582 1.18803 1.19514 0.91732 0.83094 1.41104 0.88355 1.45480 1.05360 1.01091 1.81744 1.21578 0.86158 0.89877 0.96857 1.24165 0.99766 0.94544 0.81679 0.87224 1.24094 0.92855 1.00838 0.99360 1.23618 0.98431 0.83064 0.91638 0.84036 1.23572 0.79534 1.01015 1.00074 1.49088 1.11047 1.58725 1.14100 1.17523 0.83931 0.78072 0.84233 1.90820 1.21880 1.59547 1.73301 1.19945 1.03535 0.92401 0.97284 1.22668 0.88323 0.98730 0.92301 1.21756 1.01172 0.93677 0.96505 1.22938 0.87769 0.92091 0.97529 1.49088 1.30504 1.16188 1.12331 1.82588 1.11764 0.97704 1.17871 1.77929 1.12871 1.15804 0.96071 1.75056 1.18932 1.01806 1.25361 1.23548 0.95330 0.96344 0.84744 0.94866 0.97798 0.96295 0.88336 0.89773 0.90457 0.88198 0.80269 0.74807 0.74981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.14 10.73 21.65 0.23 -54.91 16 2 C -0.07 -3.47 5.45 84.86 0.46 -3.00 16 3 Si 0.97 42.30 29.56 68.60 2.03 44.33 16 4 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.23 -10.84 10.35 84.03 0.87 -9.97 16 8 H 0.10 4.29 7.84 -2.91 -0.02 4.27 16 9 N -0.61 -26.38 3.02 -648.57 -1.96 -28.34 16 10 C 0.18 8.45 4.82 87.16 0.42 8.87 16 11 C 0.10 3.74 5.23 46.93 0.25 3.98 16 12 H 0.11 4.16 8.11 -2.39 -0.02 4.14 16 13 C -0.13 -3.80 6.81 33.46 0.23 -3.57 16 14 C 0.14 4.10 5.53 46.93 0.26 4.36 16 15 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 16 C 0.08 2.09 4.90 87.16 0.43 2.52 16 17 N -0.60 -20.06 2.95 -772.26 -2.28 -22.34 16 18 C 0.57 21.14 7.54 86.63 0.65 21.79 16 19 O -0.58 -26.89 17.40 -4.12 -0.07 -26.97 16 20 C -0.12 -3.38 5.71 -18.63 -0.11 -3.49 16 21 C 0.01 0.08 8.71 22.81 0.20 0.28 16 22 C -0.11 -0.64 9.92 21.94 0.22 -0.43 16 23 C 0.12 1.14 11.15 83.41 0.93 2.07 16 24 N -0.30 -6.87 3.94 -188.68 -0.74 -7.62 16 25 N -0.12 -3.30 13.99 37.02 0.52 -2.78 16 26 N -0.03 -1.18 13.36 37.02 0.49 -0.69 16 27 N -0.35 -13.32 12.24 -52.05 -0.64 -13.96 16 28 C 0.26 7.89 7.96 135.75 1.08 8.97 16 29 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.00 0.21 7.99 -2.39 -0.02 0.19 16 31 H 0.02 1.05 7.18 -2.39 -0.02 1.03 16 32 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.08 2.00 6.10 -2.39 -0.01 1.99 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.18 2.66 5.60 -2.91 -0.02 2.64 16 37 H 0.24 -1.23 8.06 -2.91 -0.02 -1.25 16 38 H 0.23 -0.17 8.06 -2.91 -0.02 -0.20 16 Total: -1.00 -84.67 322.41 4.59 -80.08 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: 1.12 Total: 0.81 kcal Atomic # 6 Polarization: 26.50 SS G_CDS: 5.89 Total: 32.39 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -4.37 Total: -130.64 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.07 Total: -26.97 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -84.67 4.59 -80.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032423611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.115 kcal (2) G-P(sol) polarization free energy of solvation -84.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds