Wall clock time and date at job start Fri Apr 10 2020 18:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99884 * 2 1 4 4 H 1.48497 * 109.47298 * 240.00024 * 3 2 1 5 5 H 1.48501 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47067 * 120.00167 * 3 2 1 7 7 C 1.38816 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99841 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.51840 * 127.70737 * 359.59349 * 9 7 2 11 11 C 1.56018 * 104.32173 * 182.26019 * 10 9 7 12 12 H 1.09002 * 116.25003 * 159.44091 * 11 10 9 13 13 C 1.57087 * 100.41576 * 32.81034 * 11 10 9 14 14 C 1.49293 * 126.94140 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.15110 * 15.84285 * 14 9 7 16 16 C 1.56022 * 104.09269 * 246.69772 * 14 9 7 17 17 N 1.47866 * 105.10539 * 287.92309 * 16 14 9 18 18 C 1.34770 * 126.94570 * 182.03891 * 17 16 14 19 19 O 1.21281 * 120.00292 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99972 * 359.95107 * 18 17 16 21 21 H 1.09007 * 110.01215 * 58.62654 * 20 18 17 22 22 C 1.53874 * 110.03028 * 297.19578 * 20 18 17 23 23 C 1.54164 * 108.70515 * 193.52765 * 22 20 18 24 24 S 1.82920 * 105.08860 * 27.90794 * 23 22 20 25 25 O 1.42095 * 109.35530 * 244.48319 * 24 23 22 26 26 O 1.42099 * 109.47721 * 111.30817 * 24 23 22 27 27 C 1.55053 * 110.02700 * 179.97438 * 20 18 17 28 28 H 0.96995 * 120.00214 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.17889 * 63.86760 * 10 9 7 30 30 H 1.09000 * 111.20485 * 301.16708 * 10 9 7 31 31 H 1.09000 * 112.36939 * 64.87747 * 13 11 10 32 32 H 1.08998 * 112.36851 * 192.32396 * 13 11 10 33 33 H 1.09001 * 110.31439 * 169.00974 * 16 14 9 34 34 H 1.08999 * 110.39824 * 46.87204 * 16 14 9 35 35 H 1.09006 * 109.64201 * 313.37778 * 22 20 18 36 36 H 1.09001 * 109.64545 * 73.67487 * 22 20 18 37 37 H 1.09002 * 110.32105 * 269.00683 * 23 22 20 38 38 H 1.09000 * 110.32115 * 146.80692 * 23 22 20 39 39 H 1.08998 * 110.79264 * 279.99544 * 27 20 18 40 40 H 1.09004 * 110.78758 * 43.45920 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1791 -2.5916 0.0085 11 6 -0.3586 -4.1405 0.0635 12 1 -1.3229 -4.5017 0.4210 13 6 0.8996 -4.5422 0.9138 14 6 1.9103 -3.7617 -0.0005 15 1 2.9645 -3.8351 0.2666 16 6 1.5083 -4.3457 -1.3904 17 7 0.0553 -4.6030 -1.2945 18 6 -0.7353 -5.1462 -2.2412 19 8 -1.9189 -5.3014 -2.0270 20 6 -0.1488 -5.5602 -3.5662 21 1 0.6404 -6.2960 -3.4112 22 6 0.4129 -4.3306 -4.3013 23 6 0.6894 -4.7152 -5.7683 24 16 -0.4995 -6.0542 -6.1417 25 8 0.2120 -7.2551 -6.4076 26 8 -1.4664 -5.5839 -7.0708 27 6 -1.2561 -6.1535 -4.4750 28 1 -0.4850 0.8400 0.0004 29 1 -0.6181 -2.1921 -0.9056 30 1 -0.6346 -2.1266 0.8828 31 1 0.8547 -4.1525 1.9308 32 1 1.0872 -5.6158 0.8952 33 1 2.0456 -5.2749 -1.5801 34 1 1.7133 -3.6228 -2.1799 35 1 -0.3140 -3.5189 -4.2659 36 1 1.3398 -4.0108 -3.8253 37 1 1.7122 -5.0755 -5.8789 38 1 0.5153 -3.8611 -6.4228 39 1 -1.4644 -7.1889 -4.2053 40 1 -2.1623 -5.5497 -4.4250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032505573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:38 Heat of formation + Delta-G solvation = -39.731789 kcal Electronic energy + Delta-G solvation = -25242.763863 eV Core-core repulsion = 21572.929146 eV Total energy + Delta-G solvation = -3669.834717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.35449 -38.32263 -37.19936 -36.24545 -35.81668 -33.60397 -31.61713 -30.24883 -29.27127 -28.58429 -25.91003 -25.33231 -23.79966 -22.32582 -20.46346 -19.93836 -19.02613 -18.64685 -17.74278 -17.03010 -16.62429 -16.07619 -15.87424 -15.65972 -14.90138 -14.78622 -14.49951 -14.17822 -14.00297 -13.57031 -13.14949 -12.85144 -12.47116 -12.32976 -12.29543 -12.18395 -12.08804 -11.95049 -11.72008 -11.41866 -11.30275 -11.17202 -10.99046 -10.94915 -10.82624 -10.67924 -10.51741 -10.32738 -10.16553 -9.68490 -9.61830 -8.83868 -8.18388 -7.04085 -5.86463 -3.20167 -0.14845 2.29646 2.75568 3.16293 3.31228 3.35967 3.38254 3.38494 3.83116 4.04652 4.32365 4.36513 4.43383 4.61056 4.63646 4.77238 4.99455 5.06280 5.22117 5.25085 5.38254 5.43464 5.46333 5.52829 5.63474 5.67921 5.74680 5.78534 6.07382 6.14722 6.28162 6.33781 6.46110 6.54895 7.27496 7.30768 7.56956 7.88819 7.93512 8.35851 8.94880 9.60822 10.30163 11.27272 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.004054 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.577739 B = 6905.900358 C = 7623.628532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.173 3.827 11 C 0.098 3.902 12 H 0.114 0.886 13 C -0.151 4.151 14 C 0.141 3.859 15 H 0.106 0.894 16 C 0.075 3.925 17 N -0.603 5.603 18 C 0.542 3.458 19 O -0.546 6.546 20 C -0.107 4.107 21 H 0.116 0.884 22 C -0.113 4.113 23 C -0.587 4.587 24 S 2.387 3.613 25 O -0.940 6.940 26 O -0.939 6.939 27 C -0.564 4.564 28 H 0.255 0.745 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -11.479 -6.216 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.049 3.951 11 C -0.004 4.004 12 H 0.132 0.868 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.123 0.877 16 C -0.050 4.050 17 N -0.336 5.336 18 C 0.328 3.672 19 O -0.424 6.424 20 C -0.129 4.129 21 H 0.134 0.866 22 C -0.152 4.152 23 C -0.716 4.716 24 S 2.571 3.429 25 O -0.937 6.937 26 O -0.936 6.936 27 C -0.694 4.694 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.036 -11.787 -7.044 13.882 hybrid contribution 0.645 1.412 0.676 1.693 sum 2.681 -10.375 -6.368 12.465 Atomic orbital electron populations 1.69861 1.04979 1.25569 1.56216 1.24790 0.95647 0.97653 1.02019 0.86216 0.78475 0.83208 0.77902 1.21170 1.21606 1.21113 1.18989 0.90244 0.82052 1.44688 0.90167 1.46141 1.00912 0.98994 1.86427 1.22588 0.84255 0.86860 1.01389 1.24364 0.97884 0.97731 0.80441 0.86848 1.24156 0.96571 0.99019 0.99301 1.23119 0.96572 0.86521 0.90582 0.87667 1.23531 0.79836 0.99052 1.02602 1.49201 1.09885 1.59279 1.15211 1.19424 0.85987 0.77676 0.84119 1.90684 1.15330 1.56252 1.80161 1.21940 0.97364 0.98901 0.94706 0.86572 1.22013 1.04939 0.97587 0.90658 1.30474 1.16917 1.18839 1.05395 1.09115 0.77936 0.77465 0.78420 1.93612 1.72848 1.43331 1.83885 1.93617 1.59226 1.81737 1.58994 1.30569 1.09064 1.10883 1.18847 0.93462 0.93043 0.92293 0.89651 0.91611 0.92607 0.90421 0.88814 0.87437 0.84270 0.84016 0.84092 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.59 10.73 55.49 0.60 -25.00 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.23 -5.80 10.39 -15.06 -0.16 -5.95 16 8 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.60 -13.30 3.13 -153.03 -0.48 -13.78 16 10 C 0.17 3.82 4.96 0.60 0.00 3.83 16 11 C 0.10 1.72 5.18 -62.53 -0.32 1.40 16 12 H 0.11 1.95 8.06 -51.93 -0.42 1.53 16 13 C -0.15 -2.30 6.83 -22.31 -0.15 -2.45 16 14 C 0.14 2.35 5.47 -62.56 -0.34 2.00 16 15 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.08 1.08 5.36 -1.68 -0.01 1.07 16 17 N -0.60 -9.66 2.93 -156.76 -0.46 -10.12 16 18 C 0.54 8.48 7.24 -10.99 -0.08 8.40 16 19 O -0.55 -10.33 16.13 5.56 0.09 -10.24 16 20 C -0.11 -1.18 2.49 -90.23 -0.22 -1.41 16 21 H 0.12 0.99 8.14 -51.92 -0.42 0.56 16 22 C -0.11 -1.15 5.35 -25.67 -0.14 -1.29 16 23 C -0.59 -4.56 7.26 37.77 0.27 -4.29 16 24 S 2.39 23.30 6.10 -107.50 -0.66 22.64 16 25 O -0.94 -11.73 18.14 -57.73 -1.05 -12.78 16 26 O -0.94 -12.57 18.15 -57.73 -1.05 -13.62 16 27 C -0.56 -5.70 6.20 38.24 0.24 -5.47 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 29 H 0.05 1.30 7.77 -51.93 -0.40 0.90 16 30 H 0.06 1.45 7.58 -51.93 -0.39 1.06 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.19 6.04 -51.93 -0.31 0.87 16 35 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 36 H 0.11 1.08 5.53 -51.93 -0.29 0.80 16 37 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.14 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.14 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.15 1.63 7.63 -51.93 -0.40 1.24 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -35.06 330.38 -9.62 -44.67 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.56 Total: 1.81 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.01 Total: -4.35 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.34 Total: -48.89 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -2.01 Total: -36.64 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 23.30 SS G_CDS: -0.66 Total: 22.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.06 -9.62 -44.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032505573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.940 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds