Wall clock time and date at job start Fri Apr 10 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99884 * 2 1 4 4 H 1.48497 * 109.47298 * 240.00024 * 3 2 1 5 5 H 1.48501 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47067 * 120.00167 * 3 2 1 7 7 C 1.38816 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99841 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.51840 * 127.70737 * 359.59349 * 9 7 2 11 11 C 1.56018 * 104.32173 * 182.26019 * 10 9 7 12 12 H 1.09002 * 116.25003 * 159.44091 * 11 10 9 13 13 C 1.57087 * 100.41576 * 32.81034 * 11 10 9 14 14 C 1.49293 * 126.94140 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.15110 * 15.84285 * 14 9 7 16 16 C 1.56022 * 104.09269 * 246.69772 * 14 9 7 17 17 N 1.47866 * 105.10539 * 287.92309 * 16 14 9 18 18 C 1.34770 * 126.94570 * 182.03891 * 17 16 14 19 19 O 1.21281 * 120.00292 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99972 * 359.95107 * 18 17 16 21 21 H 1.09007 * 110.01215 * 58.62654 * 20 18 17 22 22 C 1.53874 * 110.03028 * 297.19578 * 20 18 17 23 23 C 1.54164 * 108.70515 * 193.52765 * 22 20 18 24 24 S 1.82920 * 105.08860 * 27.90794 * 23 22 20 25 25 O 1.42095 * 109.35530 * 244.48319 * 24 23 22 26 26 O 1.42099 * 109.47721 * 111.30817 * 24 23 22 27 27 C 1.55053 * 110.02700 * 179.97438 * 20 18 17 28 28 H 0.96995 * 120.00214 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.17889 * 63.86760 * 10 9 7 30 30 H 1.09000 * 111.20485 * 301.16708 * 10 9 7 31 31 H 1.09000 * 112.36939 * 64.87747 * 13 11 10 32 32 H 1.08998 * 112.36851 * 192.32396 * 13 11 10 33 33 H 1.09001 * 110.31439 * 169.00974 * 16 14 9 34 34 H 1.08999 * 110.39824 * 46.87204 * 16 14 9 35 35 H 1.09006 * 109.64201 * 313.37778 * 22 20 18 36 36 H 1.09001 * 109.64545 * 73.67487 * 22 20 18 37 37 H 1.09002 * 110.32105 * 269.00683 * 23 22 20 38 38 H 1.09000 * 110.32115 * 146.80692 * 23 22 20 39 39 H 1.08998 * 110.79264 * 279.99544 * 27 20 18 40 40 H 1.09004 * 110.78758 * 43.45920 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1791 -2.5916 0.0085 11 6 -0.3586 -4.1405 0.0635 12 1 -1.3229 -4.5017 0.4210 13 6 0.8996 -4.5422 0.9138 14 6 1.9103 -3.7617 -0.0005 15 1 2.9645 -3.8351 0.2666 16 6 1.5083 -4.3457 -1.3904 17 7 0.0553 -4.6030 -1.2945 18 6 -0.7353 -5.1462 -2.2412 19 8 -1.9189 -5.3014 -2.0270 20 6 -0.1488 -5.5602 -3.5662 21 1 0.6404 -6.2960 -3.4112 22 6 0.4129 -4.3306 -4.3013 23 6 0.6894 -4.7152 -5.7683 24 16 -0.4995 -6.0542 -6.1417 25 8 0.2120 -7.2551 -6.4076 26 8 -1.4664 -5.5839 -7.0708 27 6 -1.2561 -6.1535 -4.4750 28 1 -0.4850 0.8400 0.0004 29 1 -0.6181 -2.1921 -0.9056 30 1 -0.6346 -2.1266 0.8828 31 1 0.8547 -4.1525 1.9308 32 1 1.0872 -5.6158 0.8952 33 1 2.0456 -5.2749 -1.5801 34 1 1.7133 -3.6228 -2.1799 35 1 -0.3140 -3.5189 -4.2659 36 1 1.3398 -4.0108 -3.8253 37 1 1.7122 -5.0755 -5.8789 38 1 0.5153 -3.8611 -6.4228 39 1 -1.4644 -7.1889 -4.2053 40 1 -2.1623 -5.5497 -4.4250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032505573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:36 Heat of formation + Delta-G solvation = -66.274827 kcal Electronic energy + Delta-G solvation = -25243.914855 eV Core-core repulsion = 21572.929146 eV Total energy + Delta-G solvation = -3670.985709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.64251 -39.61668 -38.11169 -37.17313 -36.78570 -35.30951 -33.19421 -31.10009 -30.72060 -30.13076 -26.93768 -26.85375 -25.23337 -23.42450 -21.74579 -21.35412 -20.01288 -19.83997 -18.98840 -18.24479 -17.73954 -17.39367 -16.95999 -16.75198 -16.22542 -16.04201 -15.72821 -15.30775 -15.10640 -14.98199 -14.44062 -13.85860 -13.69377 -13.47446 -13.41894 -13.27475 -13.18267 -13.06275 -13.02353 -12.82916 -12.81591 -12.66242 -12.35730 -12.16643 -12.12910 -11.97332 -11.85754 -11.77981 -11.45056 -11.25717 -10.93605 -10.68261 -9.52383 -8.87792 -7.82686 -5.15842 -0.94158 1.49380 1.50506 1.51066 1.55789 1.57168 2.00441 2.50634 2.58279 3.03956 3.17014 3.33042 3.37849 3.54087 3.56322 3.72975 3.86154 3.93153 3.96752 3.99761 4.07888 4.24770 4.46670 4.58598 4.65427 4.72430 4.82137 4.84505 4.91985 4.94417 5.05099 5.05484 5.16403 5.30382 5.47678 5.52578 5.65803 6.07071 6.66538 6.99713 7.12462 7.71754 8.45611 9.30227 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.004054 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.577739 B = 6905.900358 C = 7623.628532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.306 1.306 6 H -0.277 1.277 7 C -0.223 4.223 8 H 0.096 0.904 9 N -0.619 5.619 10 C 0.184 3.816 11 C 0.100 3.900 12 H 0.111 0.889 13 C -0.131 4.131 14 C 0.133 3.867 15 H 0.133 0.867 16 C 0.080 3.920 17 N -0.605 5.605 18 C 0.535 3.465 19 O -0.587 6.587 20 C -0.102 4.102 21 H 0.156 0.844 22 C -0.116 4.116 23 C -0.562 4.562 24 S 2.411 3.589 25 O -0.962 6.962 26 O -0.979 6.979 27 C -0.566 4.566 28 H 0.242 0.758 29 H 0.005 0.995 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.172 0.828 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -13.505 -6.852 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.234 1.234 6 H -0.203 1.203 7 C -0.352 4.352 8 H 0.114 0.886 9 N -0.345 5.345 10 C 0.059 3.941 11 C -0.003 4.003 12 H 0.129 0.871 13 C -0.170 4.170 14 C 0.027 3.973 15 H 0.151 0.849 16 C -0.044 4.044 17 N -0.338 5.338 18 C 0.323 3.677 19 O -0.468 6.468 20 C -0.124 4.124 21 H 0.174 0.826 22 C -0.155 4.155 23 C -0.694 4.694 24 S 2.597 3.403 25 O -0.960 6.960 26 O -0.977 6.977 27 C -0.696 4.696 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.190 0.810 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.305 -13.881 -7.696 16.735 hybrid contribution -0.338 2.021 0.922 2.247 sum 4.967 -11.859 -6.774 14.533 Atomic orbital electron populations 1.70099 1.06544 1.25086 1.59030 1.25547 0.96240 1.00843 1.03556 0.85253 0.77019 0.79371 0.78294 1.20146 1.23354 1.20325 1.19476 0.91111 0.83105 1.41501 0.88618 1.46372 1.01014 1.00797 1.86303 1.22198 0.84552 0.90049 0.97297 1.24129 0.99326 0.94166 0.82685 0.87128 1.24060 0.93921 1.00936 0.98079 1.23557 0.98086 0.83371 0.92306 0.84937 1.23502 0.78968 1.01286 1.00614 1.49270 1.10809 1.59086 1.14608 1.20230 0.85496 0.76747 0.85207 1.90667 1.17248 1.57855 1.81051 1.22043 0.98361 1.00111 0.91933 0.82641 1.22017 1.04653 0.96649 0.92172 1.30345 1.17507 1.17819 1.03688 1.08340 0.77362 0.77234 0.77331 1.93577 1.73064 1.45125 1.84196 1.93564 1.61155 1.82360 1.60575 1.30577 1.08506 1.11481 1.19017 0.94854 0.97622 0.96394 0.90431 0.87839 0.87304 0.91127 0.90932 0.86536 0.80997 0.82585 0.82761 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.09 10.73 21.65 0.23 -55.86 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.97 43.36 29.55 68.60 2.03 45.39 16 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.31 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.22 -11.04 10.39 84.03 0.87 -10.17 16 8 H 0.10 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -27.19 3.13 -638.08 -2.00 -29.19 16 10 C 0.18 8.49 4.96 86.37 0.43 8.92 16 11 C 0.10 3.49 5.18 46.93 0.24 3.73 16 12 H 0.11 3.88 8.06 -2.39 -0.02 3.86 16 13 C -0.13 -3.62 6.83 33.46 0.23 -3.39 16 14 C 0.13 3.98 5.47 46.92 0.26 4.24 16 15 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 16 C 0.08 1.99 5.36 87.17 0.47 2.46 16 17 N -0.61 -18.25 2.93 -768.27 -2.25 -20.51 16 18 C 0.53 16.01 7.24 87.66 0.63 16.65 16 19 O -0.59 -22.37 16.13 -3.03 -0.05 -22.42 16 20 C -0.10 -1.98 2.49 -10.54 -0.03 -2.00 16 21 H 0.16 1.81 8.14 -2.38 -0.02 1.79 16 22 C -0.12 -2.04 5.35 31.28 0.17 -1.88 16 23 C -0.56 -6.71 7.26 72.38 0.53 -6.18 16 24 S 2.41 42.40 6.10 -56.49 -0.34 42.06 16 25 O -0.96 -21.62 18.14 -127.47 -2.31 -23.93 16 26 O -0.98 -25.64 18.15 -127.47 -2.31 -27.95 16 27 C -0.57 -10.64 6.20 72.69 0.45 -10.19 16 28 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.01 0.30 7.77 -2.39 -0.02 0.28 16 30 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.91 6.04 -2.39 -0.01 1.89 16 35 H 0.07 1.60 8.09 -2.38 -0.02 1.58 16 36 H 0.12 1.90 5.53 -2.39 -0.01 1.89 16 37 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.13 2.98 7.63 -2.38 -0.02 2.97 16 Total: -1.00 -80.74 330.38 -1.24 -81.99 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.05 Total: 11.48 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 4.71 Total: -1.05 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.02 Total: -105.56 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: -4.68 Total: -74.30 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 42.40 SS G_CDS: -0.34 Total: 42.06 kcal Total: -80.74 -1.24 -81.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032505573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.713 kcal (2) G-P(sol) polarization free energy of solvation -80.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds