Wall clock time and date at job start Fri Apr 10 2020 18:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48499 * 109.47087 * 239.99684 * 3 2 1 5 5 H 1.48497 * 109.46822 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47008 * 119.99876 * 3 2 1 7 7 C 1.38822 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.47355 * 126.78951 * 0.28173 * 9 7 2 11 11 C 1.56023 * 105.14844 * 182.06329 * 10 9 7 12 12 H 1.08994 * 116.89502 * 159.05185 * 11 10 9 13 13 C 1.57431 * 99.68988 * 32.50194 * 11 10 9 14 14 C 1.49285 * 126.94192 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.79114 * 16.28428 * 14 9 7 16 16 C 1.56018 * 104.09032 * 246.67499 * 14 9 7 17 17 N 1.47870 * 105.10269 * 288.76783 * 16 14 9 18 18 C 1.34778 * 126.94176 * 181.97518 * 17 16 14 19 19 O 1.21544 * 120.00133 * 184.91111 * 18 17 16 20 20 C 1.47874 * 120.00155 * 4.91371 * 18 17 16 21 21 C 1.39451 * 121.11478 * 318.49771 * 20 18 17 22 22 C 1.38618 * 119.38002 * 180.02562 * 21 20 18 23 23 N 1.31588 * 121.63363 * 359.97438 * 22 21 20 24 24 C 1.32211 * 121.86684 * 359.97438 * 23 22 21 25 25 N 1.37208 * 134.67694 * 179.97438 * 24 23 22 26 26 H 0.97002 * 125.86516 * 0.03897 * 25 24 23 27 27 N 1.28773 * 108.26763 * 180.02562 * 25 24 23 28 28 N 1.28693 * 111.75538 * 359.74120 * 27 25 24 29 29 C 1.34385 * 109.15264 * 0.42434 * 28 27 25 30 30 H 0.96997 * 120.00565 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.43506 * 63.07240 * 10 9 7 32 32 H 1.09000 * 110.24603 * 300.95776 * 10 9 7 33 33 H 1.09000 * 112.53264 * 191.98376 * 13 11 10 34 34 H 1.08993 * 112.31846 * 64.44547 * 13 11 10 35 35 H 1.09000 * 110.31640 * 169.86072 * 16 14 9 36 36 H 1.08997 * 110.40024 * 47.71750 * 16 14 9 37 37 H 1.08000 * 120.31326 * 0.02562 * 21 20 18 38 38 H 1.07994 * 119.18448 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5623 -0.0058 11 6 -0.3649 -4.1049 0.0515 12 1 -1.3379 -4.4471 0.4038 13 6 0.8839 -4.5248 0.9133 14 6 1.9102 -3.7617 0.0016 15 1 2.9618 -3.8479 0.2753 16 6 1.5087 -4.3465 -1.3880 17 7 0.0520 -4.5843 -1.2997 18 6 -0.7404 -5.1201 -2.2492 19 8 -1.9422 -5.1770 -2.0769 20 6 -0.1476 -5.6388 -3.5006 21 6 0.8737 -4.9498 -4.1540 22 6 1.4030 -5.4687 -5.3254 23 7 0.9662 -6.5987 -5.8389 24 6 0.0016 -7.2987 -5.2666 25 7 -0.6414 -8.4747 -5.5601 26 1 -0.4651 -9.0430 -6.3262 27 7 -1.5189 -8.6946 -4.6437 28 7 -1.5193 -7.7673 -3.7513 29 6 -0.5946 -6.8464 -4.0720 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5660 -2.1504 -0.9196 32 1 -0.5785 -2.0822 0.8679 33 1 1.0490 -5.6022 0.9120 34 1 0.8450 -4.1183 1.9238 35 1 2.0348 -5.2836 -1.5706 36 1 1.7279 -3.6298 -2.1795 37 1 1.2487 -4.0205 -3.7512 38 1 2.1935 -4.9322 -5.8290 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032512372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:41 Heat of formation + Delta-G solvation = 168.645605 kcal Electronic energy + Delta-G solvation = -26108.343666 eV Core-core repulsion = 22376.686422 eV Total energy + Delta-G solvation = -3731.657244 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.57595 -40.36108 -39.12992 -37.78143 -34.36469 -33.77391 -32.40708 -31.21948 -30.98644 -29.05591 -28.64158 -25.88453 -25.22063 -24.13373 -23.71804 -23.00461 -21.14978 -20.01740 -19.31850 -18.85154 -18.16048 -17.52327 -16.78182 -16.61021 -15.91004 -15.73175 -15.11706 -14.89788 -14.35902 -13.98150 -13.65557 -13.52231 -13.32789 -12.78050 -12.50504 -12.27488 -12.04151 -11.88544 -11.75626 -11.66241 -11.37085 -11.07529 -10.90615 -10.81441 -10.65848 -10.33290 -10.22503 -10.11802 -9.69952 -9.52561 -9.44330 -9.22806 -8.75336 -8.11741 -6.99669 -5.81875 -3.17450 -0.04206 0.71205 1.92561 2.02916 2.84230 3.05714 3.33927 3.38549 3.41068 3.45529 3.56401 4.06281 4.22612 4.36855 4.39638 4.61133 4.94385 5.01521 5.09475 5.25722 5.28791 5.32140 5.49379 5.57109 5.62826 5.70925 5.83066 5.96668 6.09995 6.19870 6.34602 6.36855 6.41056 6.52086 6.59735 7.27239 7.37369 7.42648 7.66993 7.89573 7.96185 8.05103 8.37574 9.05185 9.65616 10.33733 11.29661 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.003803 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.007874 B = 7360.031945 C = 7890.071226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.596 5.596 10 C 0.175 3.825 11 C 0.101 3.899 12 H 0.116 0.884 13 C -0.153 4.153 14 C 0.142 3.858 15 H 0.109 0.891 16 C 0.077 3.923 17 N -0.597 5.597 18 C 0.568 3.432 19 O -0.520 6.520 20 C 0.008 3.992 21 C -0.146 4.146 22 C 0.167 3.833 23 N -0.468 5.468 24 C 0.215 3.785 25 N -0.408 5.408 26 H 0.456 0.544 27 N -0.002 5.002 28 N -0.217 5.217 29 C -0.003 4.003 30 H 0.255 0.745 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.167 0.833 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -13.435 -8.920 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.320 5.320 10 C 0.050 3.950 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.192 4.192 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.048 4.048 17 N -0.331 5.331 18 C 0.355 3.645 19 O -0.396 6.396 20 C -0.008 4.008 21 C -0.169 4.169 22 C -0.005 4.005 23 N -0.182 5.182 24 C -0.028 4.028 25 N -0.138 5.138 26 H 0.304 0.696 27 N 0.015 4.985 28 N -0.093 5.093 29 C -0.132 4.132 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.185 0.815 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.528 -14.508 -9.073 17.471 hybrid contribution 0.986 1.517 -0.409 1.855 sum 4.514 -12.991 -9.482 16.705 Atomic orbital electron populations 1.69897 1.04958 1.25566 1.55989 1.24824 0.95658 0.97734 1.01814 0.86201 0.78454 0.83152 0.77902 1.21117 1.21630 1.21102 1.18995 0.90396 0.81997 1.44984 0.90132 1.45114 1.01334 0.99262 1.86274 1.21843 0.84726 0.86883 1.01590 1.24523 0.98031 0.97701 0.79854 0.86571 1.24245 0.96626 0.99030 0.99337 1.23163 0.96704 0.86285 0.90564 0.87357 1.23555 0.79720 0.99011 1.02512 1.49142 1.09486 1.58890 1.15542 1.17425 0.86131 0.78761 0.82222 1.90826 1.13536 1.57004 1.78274 1.19675 0.94134 0.91182 0.95809 1.22736 0.95375 1.02165 0.96660 1.22876 0.96706 0.89086 0.91858 1.66330 1.10834 1.07663 1.33328 1.19833 0.97375 0.90986 0.94620 1.44633 1.27574 1.17952 1.23677 0.69574 1.78201 1.06648 1.19016 0.94597 1.75470 1.16915 0.99336 1.17585 1.20099 0.98775 0.97755 0.96536 0.93429 0.93337 0.92338 0.91528 0.89536 0.92623 0.90557 0.81526 0.79995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.75 10.53 55.49 0.58 -25.16 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.24 -5.91 10.37 -15.05 -0.16 -6.07 16 8 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.60 -13.40 3.01 -156.76 -0.47 -13.87 16 10 C 0.17 4.00 4.74 -1.96 -0.01 3.99 16 11 C 0.10 1.88 5.25 -62.34 -0.33 1.55 16 12 H 0.12 2.14 8.08 -51.93 -0.42 1.72 16 13 C -0.15 -2.45 6.83 -22.12 -0.15 -2.60 16 14 C 0.14 2.42 5.53 -62.57 -0.35 2.07 16 15 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 16 C 0.08 1.19 4.92 -1.68 -0.01 1.18 16 17 N -0.60 -10.61 2.95 -157.64 -0.46 -11.07 16 18 C 0.57 10.68 7.56 -12.32 -0.09 10.59 16 19 O -0.52 -11.63 17.35 5.33 0.09 -11.54 16 20 C 0.01 0.13 5.59 -104.50 -0.58 -0.45 16 21 C -0.15 -1.74 8.71 -38.99 -0.34 -2.08 16 22 C 0.17 1.61 11.14 -17.52 -0.20 1.41 16 23 N -0.47 -5.32 10.35 -12.38 -0.13 -5.45 16 24 C 0.22 2.76 8.56 -156.21 -1.34 1.42 16 25 N -0.41 -4.29 7.06 31.11 0.22 -4.07 16 26 H 0.46 2.71 8.96 -190.25 -1.71 1.01 16 27 N 0.00 -0.02 13.29 60.35 0.80 0.78 16 28 N -0.22 -3.65 12.42 32.23 0.40 -3.25 16 29 C 0.00 -0.05 7.06 -84.72 -0.60 -0.65 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 32 H 0.06 1.49 7.42 -51.93 -0.39 1.10 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.19 6.05 -51.93 -0.31 0.88 16 37 H 0.17 1.86 5.57 -52.49 -0.29 1.57 16 38 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -33.67 320.11 -8.58 -42.25 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.18 Total: 0.60 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -4.24 Total: 10.19 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.94 Total: -62.10 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.67 -8.58 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032512372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.897 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds