Wall clock time and date at job start Fri Apr 10 2020 18:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 S 1.81404 * 109.46946 * 294.99789 * 4 2 1 6 6 O 1.42098 * 110.54122 * 291.62548 * 5 4 2 7 7 O 1.42102 * 110.54223 * 68.37613 * 5 4 2 8 8 C 1.76200 * 104.45035 * 180.02562 * 5 4 2 9 9 C 1.38249 * 119.96853 * 269.72907 * 8 5 4 10 10 C 1.38199 * 120.01959 * 179.72893 * 9 8 5 11 11 C 1.38461 * 119.97624 * 0.55905 * 10 9 8 12 12 F 1.35102 * 120.02844 * 179.68502 * 11 10 9 13 13 C 1.38462 * 119.94784 * 359.70904 * 11 10 9 14 14 C 1.38192 * 119.97485 * 0.02562 * 13 11 10 15 15 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 16 16 O 1.21292 * 120.00593 * 240.00350 * 15 2 1 17 17 N 1.34782 * 119.99764 * 60.00350 * 15 2 1 18 18 C 1.37097 * 120.00048 * 179.97438 * 17 15 2 19 19 H 1.08002 * 120.00019 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99968 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00422 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47347 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47234 * 120.00472 * 22 20 18 25 25 H 1.48503 * 109.47074 * 240.00179 * 22 20 18 26 26 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 31 31 H 1.07997 * 119.98918 * 359.97372 * 9 8 5 32 32 H 1.07999 * 120.01338 * 180.25645 * 10 9 8 33 33 H 1.08001 * 120.01276 * 179.97438 * 13 11 10 34 34 H 1.07994 * 119.98906 * 180.02562 * 14 13 11 35 35 H 0.97002 * 119.99790 * 359.97438 * 17 15 2 36 36 H 0.96999 * 120.00745 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5601 0.2157 2.7266 6 8 2.2659 1.4474 2.7869 7 8 0.1519 0.1684 2.9114 8 6 2.2071 -0.7215 4.0711 9 6 1.4355 -1.7046 4.6622 10 6 1.9440 -2.4441 5.7131 11 6 3.2225 -2.1923 6.1815 12 9 3.7183 -2.9103 7.2129 13 6 3.9922 -1.2037 5.5922 14 6 3.4837 -0.4692 4.5379 15 6 2.0324 -0.7105 -1.2304 16 8 2.7296 -1.6967 -1.1191 17 7 1.7068 -0.2501 -2.4546 18 6 2.1642 -0.8961 -3.5739 19 1 2.7857 -1.7738 -3.4748 20 6 1.8281 -0.4218 -4.8359 21 7 1.0723 0.6464 -4.9566 22 14 2.4519 -1.3016 -6.3611 23 1 3.2776 -2.4678 -5.9569 24 1 1.2975 -1.7695 -7.1696 25 1 3.2760 -0.3673 -7.1693 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 0.4365 -1.8974 4.3001 32 1 1.3427 -3.2149 6.1721 33 1 4.9894 -1.0061 5.9569 34 1 4.0841 0.3017 4.0778 35 1 1.1488 0.5384 -2.5436 36 1 0.8379 0.9778 -5.8376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131428390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:12 Heat of formation + Delta-G solvation = -132.116335 kcal Electronic energy + Delta-G solvation = -23457.025262 eV Core-core repulsion = 19562.005483 eV Total energy + Delta-G solvation = -3895.019779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.44217 -39.30138 -38.67957 -37.15704 -36.00482 -34.47056 -33.79709 -31.63558 -31.28904 -31.17630 -27.48451 -25.33859 -23.58742 -23.53675 -22.72217 -19.37311 -18.92909 -18.42966 -18.01559 -17.55576 -16.97875 -16.60163 -16.09532 -15.66088 -15.31204 -15.08944 -14.71808 -14.58935 -14.14752 -14.05369 -13.73193 -13.66851 -13.20766 -12.99119 -12.80609 -12.75165 -12.34177 -12.04310 -11.64543 -11.60095 -11.56073 -11.32296 -11.20092 -11.10451 -10.92704 -10.55961 -10.39681 -10.27251 -9.61951 -9.60915 -9.50427 -8.50094 -8.07246 -6.50253 -3.91851 -0.06403 0.34373 0.75710 2.75344 2.91890 3.10653 3.22615 3.29206 3.69675 3.75023 3.76360 3.99320 4.10847 4.30415 4.41141 4.59571 4.77149 4.78278 4.82582 5.02179 5.21494 5.22522 5.36983 5.41241 5.56473 5.61795 5.64867 5.67734 5.80802 5.91736 6.12242 6.30126 6.33263 6.49705 7.47446 7.95489 8.48910 9.07434 9.43023 9.92395 10.67008 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.002926 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.067508 B = 9566.506764 C =10098.439825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 H 0.098 0.902 4 C -0.566 4.566 5 S 2.491 3.509 6 O -0.937 6.937 7 O -0.934 6.934 8 C -0.671 4.671 9 C 0.007 3.993 10 C -0.176 4.176 11 C 0.150 3.850 12 F -0.132 7.132 13 C -0.176 4.176 14 C 0.007 3.993 15 C 0.450 3.550 16 O -0.593 6.593 17 N -0.554 5.554 18 C -0.304 4.304 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.931 3.069 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.280 1.280 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.395 0.605 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -1.906 19.069 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.118 4.118 3 H 0.116 0.884 4 C -0.698 4.698 5 S 2.672 3.328 6 O -0.934 6.934 7 O -0.931 6.931 8 C -0.757 4.757 9 C -0.011 4.011 10 C -0.196 4.196 11 C 0.130 3.870 12 F -0.110 7.110 13 C -0.195 4.195 14 C -0.012 4.012 15 C 0.234 3.766 16 O -0.479 6.479 17 N -0.189 5.189 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.758 3.242 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.206 1.206 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.229 0.771 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.712 -1.733 19.108 19.199 hybrid contribution 0.584 -0.873 -0.502 1.164 sum 1.296 -2.606 18.606 18.832 Atomic orbital electron populations 1.22266 0.92627 1.04218 1.04162 1.20914 0.97543 1.00178 0.93124 0.88409 1.30018 1.13201 1.13874 1.12692 1.05728 0.75100 0.75740 0.76211 1.93567 1.74550 1.39137 1.86181 1.93554 1.27991 1.86518 1.85030 1.30839 1.05693 1.16160 1.22986 1.20893 0.98872 0.89564 0.91802 1.21295 0.94982 1.03280 1.00010 1.18014 0.92835 0.90813 0.85325 1.91544 1.87659 1.76183 1.55658 1.21294 1.01605 0.97518 0.99108 1.20897 0.92537 0.95123 0.92632 1.19349 0.86021 0.87341 0.83853 1.90511 1.42603 1.28520 1.86276 1.41857 1.45278 1.27517 1.04200 1.19784 1.29464 1.11063 0.83028 0.87714 1.25298 0.96687 0.96407 0.99381 1.69611 1.36228 1.22666 1.25209 0.85783 0.78537 0.79258 0.80658 1.19184 1.20656 1.20641 0.91042 0.90655 0.90382 0.84052 0.83875 0.82800 0.83639 0.83623 0.82856 0.77143 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.78 37.16 0.33 -2.32 16 2 C -0.09 -1.57 2.72 -91.77 -0.25 -1.82 16 3 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 4 C -0.57 -7.67 4.77 37.16 0.18 -7.49 16 5 S 2.49 30.71 4.81 -107.50 -0.52 30.19 16 6 O -0.94 -13.77 17.12 -57.54 -0.99 -14.75 16 7 O -0.93 -12.95 14.87 -57.54 -0.86 -13.81 16 8 C -0.67 -7.21 5.66 -39.57 -0.22 -7.43 16 9 C 0.01 0.07 9.47 -39.59 -0.37 -0.30 16 10 C -0.18 -1.56 10.03 -39.51 -0.40 -1.96 16 11 C 0.15 1.42 7.30 -39.42 -0.29 1.13 16 12 F -0.13 -1.28 17.27 2.25 0.04 -1.24 16 13 C -0.18 -1.58 10.03 -39.52 -0.40 -1.98 16 14 C 0.01 0.07 9.47 -39.60 -0.37 -0.31 16 15 C 0.45 10.11 7.11 -10.98 -0.08 10.03 16 16 O -0.59 -15.16 15.50 5.55 0.09 -15.07 16 17 N -0.55 -13.55 5.18 -10.96 -0.06 -13.61 16 18 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 19 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -23.75 13.05 55.50 0.72 -23.02 16 22 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.02 5.61 -51.93 -0.29 0.73 16 28 H 0.08 1.18 7.56 -51.93 -0.39 0.79 16 29 H 0.14 1.75 8.14 -51.92 -0.42 1.33 16 30 H 0.14 1.85 7.96 -51.92 -0.41 1.44 16 31 H 0.15 1.21 7.56 -52.49 -0.40 0.82 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.28 7.57 -52.49 -0.40 0.88 16 35 H 0.39 9.22 7.32 -40.82 -0.30 8.92 16 36 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -33.76 328.75 -7.57 -41.33 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -3.81 Total: 9.85 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.12 Total: -20.26 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.67 Total: -36.63 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.75 Total: -43.63 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 30.71 SS G_CDS: -0.52 Total: 30.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.76 -7.57 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131428390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.785 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds