Wall clock time and date at job start Fri Apr 10 2020 18:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 S 1.81404 * 109.46946 * 294.99789 * 4 2 1 6 6 O 1.42098 * 110.54122 * 291.62548 * 5 4 2 7 7 O 1.42102 * 110.54223 * 68.37613 * 5 4 2 8 8 C 1.76200 * 104.45035 * 180.02562 * 5 4 2 9 9 C 1.38249 * 119.96853 * 269.72907 * 8 5 4 10 10 C 1.38199 * 120.01959 * 179.72893 * 9 8 5 11 11 C 1.38461 * 119.97624 * 0.55905 * 10 9 8 12 12 F 1.35102 * 120.02844 * 179.68502 * 11 10 9 13 13 C 1.38462 * 119.94784 * 359.70904 * 11 10 9 14 14 C 1.38192 * 119.97485 * 0.02562 * 13 11 10 15 15 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 16 16 O 1.21292 * 120.00593 * 240.00350 * 15 2 1 17 17 N 1.34782 * 119.99764 * 60.00350 * 15 2 1 18 18 C 1.37097 * 120.00048 * 179.97438 * 17 15 2 19 19 H 1.08002 * 120.00019 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99968 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00422 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47347 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47234 * 120.00472 * 22 20 18 25 25 H 1.48503 * 109.47074 * 240.00179 * 22 20 18 26 26 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 31 31 H 1.07997 * 119.98918 * 359.97372 * 9 8 5 32 32 H 1.07999 * 120.01338 * 180.25645 * 10 9 8 33 33 H 1.08001 * 120.01276 * 179.97438 * 13 11 10 34 34 H 1.07994 * 119.98906 * 180.02562 * 14 13 11 35 35 H 0.97002 * 119.99790 * 359.97438 * 17 15 2 36 36 H 0.96999 * 120.00745 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5601 0.2157 2.7266 6 8 2.2659 1.4474 2.7869 7 8 0.1519 0.1684 2.9114 8 6 2.2071 -0.7215 4.0711 9 6 1.4355 -1.7046 4.6622 10 6 1.9440 -2.4441 5.7131 11 6 3.2225 -2.1923 6.1815 12 9 3.7183 -2.9103 7.2129 13 6 3.9922 -1.2037 5.5922 14 6 3.4837 -0.4692 4.5379 15 6 2.0324 -0.7105 -1.2304 16 8 2.7296 -1.6967 -1.1191 17 7 1.7068 -0.2501 -2.4546 18 6 2.1642 -0.8961 -3.5739 19 1 2.7857 -1.7738 -3.4748 20 6 1.8281 -0.4218 -4.8359 21 7 1.0723 0.6464 -4.9566 22 14 2.4519 -1.3016 -6.3611 23 1 3.2776 -2.4678 -5.9569 24 1 1.2975 -1.7695 -7.1696 25 1 3.2760 -0.3673 -7.1693 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 0.4365 -1.8974 4.3001 32 1 1.3427 -3.2149 6.1721 33 1 4.9894 -1.0061 5.9569 34 1 4.0841 0.3017 4.0778 35 1 1.1488 0.5384 -2.5436 36 1 0.8379 0.9778 -5.8376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131428390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:12 Heat of formation + Delta-G solvation = -155.552936 kcal Electronic energy + Delta-G solvation = -23458.041549 eV Core-core repulsion = 19562.005483 eV Total energy + Delta-G solvation = -3896.036066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.16841 -40.45066 -40.01810 -38.23111 -37.09320 -36.19870 -35.44445 -33.22593 -32.33127 -31.94406 -28.68702 -27.20580 -24.50113 -24.28775 -24.08742 -20.81588 -20.15839 -19.87579 -19.24329 -18.58917 -17.89669 -17.73732 -16.91505 -16.79974 -16.69008 -16.48363 -15.92506 -15.90587 -15.72495 -14.89674 -14.71222 -14.57209 -14.45486 -14.40702 -14.00053 -13.73324 -13.58683 -13.51451 -13.11898 -12.95396 -12.77523 -12.58201 -12.36338 -12.26804 -12.24911 -12.11176 -12.08578 -11.66330 -11.53951 -10.35700 -10.30243 -10.24761 -10.04608 -8.48575 -5.97999 -1.05287 -0.44699 0.06394 1.36152 1.42839 1.56562 1.82417 1.98064 2.14391 2.29048 2.75862 2.99317 3.07737 3.16904 3.19092 3.39218 3.56243 3.77569 3.79891 4.01759 4.10345 4.17830 4.34761 4.50474 4.53587 4.67022 4.76497 4.80619 4.85203 4.93267 4.96772 5.02271 5.24388 5.40658 5.64002 5.96746 6.54424 7.08628 7.51407 8.04296 8.68794 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.002926 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.067508 B = 9566.506764 C =10098.439825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 H 0.114 0.886 4 C -0.575 4.575 5 S 2.522 3.478 6 O -0.960 6.960 7 O -0.947 6.947 8 C -0.678 4.678 9 C -0.001 4.001 10 C -0.175 4.175 11 C 0.141 3.859 12 F -0.134 7.134 13 C -0.176 4.176 14 C -0.005 4.005 15 C 0.450 3.550 16 O -0.627 6.627 17 N -0.566 5.566 18 C -0.336 4.336 19 H 0.083 0.917 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.398 0.602 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -2.161 20.064 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.117 4.117 3 H 0.132 0.868 4 C -0.704 4.704 5 S 2.705 3.295 6 O -0.958 6.958 7 O -0.945 6.945 8 C -0.766 4.766 9 C -0.020 4.020 10 C -0.195 4.195 11 C 0.122 3.878 12 F -0.112 7.112 13 C -0.195 4.195 14 C -0.024 4.024 15 C 0.236 3.764 16 O -0.514 6.514 17 N -0.202 5.202 18 C -0.466 4.466 19 H 0.101 0.899 20 C -0.212 4.212 21 N -0.558 5.558 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.197 1.197 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.182 0.818 35 H 0.232 0.768 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.597 -1.958 20.078 20.182 hybrid contribution 0.642 -0.836 -0.676 1.252 sum 1.239 -2.794 19.402 19.641 Atomic orbital electron populations 1.22298 0.91306 1.04659 1.04993 1.20921 0.98657 1.00629 0.91447 0.86765 1.30112 1.13570 1.14533 1.12220 1.04600 0.74305 0.74950 0.75656 1.93534 1.75001 1.40725 1.86498 1.93526 1.29047 1.86737 1.85143 1.30520 1.06515 1.16982 1.22615 1.21163 0.99543 0.89255 0.92003 1.21574 0.94978 1.03397 0.99504 1.18224 0.93274 0.90960 0.85357 1.91543 1.87714 1.76227 1.55733 1.21550 1.02563 0.96898 0.98526 1.21134 0.92449 0.95680 0.93104 1.20331 0.84478 0.86704 0.84867 1.90479 1.43790 1.30088 1.87065 1.41938 1.45903 1.27807 1.04531 1.19756 1.30711 1.11434 0.84690 0.89917 1.26065 0.96514 0.96970 1.01602 1.69671 1.36586 1.23355 1.26183 0.84862 0.78201 0.78084 0.77139 1.19622 1.19636 1.19668 0.90872 0.88677 0.90695 0.83065 0.83533 0.81268 0.81279 0.81444 0.81787 0.76758 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.13 8.78 71.98 0.63 -4.50 16 2 C -0.09 -3.08 2.72 -11.54 -0.03 -3.11 16 3 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 4 C -0.57 -15.07 4.77 71.98 0.34 -14.72 16 5 S 2.52 58.67 4.81 -56.49 -0.27 58.40 16 6 O -0.96 -27.06 17.12 -127.65 -2.19 -29.25 16 7 O -0.95 -24.62 14.87 -127.65 -1.90 -26.52 16 8 C -0.68 -13.43 5.66 22.27 0.13 -13.30 16 9 C 0.00 -0.02 9.47 22.26 0.21 0.19 16 10 C -0.18 -2.69 10.03 22.31 0.22 -2.47 16 11 C 0.14 2.39 7.30 22.38 0.16 2.55 16 12 F -0.13 -2.33 17.27 44.97 0.78 -1.55 16 13 C -0.18 -2.80 10.03 22.31 0.22 -2.58 16 14 C 0.00 -0.09 9.47 22.26 0.21 0.12 16 15 C 0.45 20.48 7.11 87.66 0.62 21.10 16 16 O -0.63 -32.62 15.50 -3.07 -0.05 -32.67 16 17 N -0.57 -28.29 5.18 -306.98 -1.59 -29.88 16 18 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 22 Si 0.99 41.90 29.55 68.60 2.03 43.93 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.42 5.61 -2.39 -0.01 2.41 16 28 H 0.07 2.23 7.56 -2.38 -0.02 2.21 16 29 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 30 H 0.15 3.72 7.96 -2.39 -0.02 3.70 16 31 H 0.17 2.28 7.56 -2.91 -0.02 2.26 16 32 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.16 2.50 7.57 -2.91 -0.02 2.48 16 35 H 0.40 18.95 7.32 -92.71 -0.68 18.27 16 36 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -71.77 328.75 1.55 -70.22 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.45 Total: 30.25 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 4.01 Total: -34.64 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -1.31 Total: -78.17 kcal Atomic # 8 Polarization: -84.31 SS G_CDS: -4.13 Total: -88.44 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 58.67 SS G_CDS: -0.27 Total: 58.40 kcal Total: -71.77 1.55 -70.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131428390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.332 kcal (2) G-P(sol) polarization free energy of solvation -71.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds