Wall clock time and date at job start Fri Apr 10 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 S 1.81399 * 109.47175 * 65.00000 * 4 2 1 6 6 O 1.42102 * 110.54586 * 291.62647 * 5 4 2 7 7 O 1.42106 * 110.54465 * 68.37730 * 5 4 2 8 8 C 1.76195 * 104.45330 * 180.02562 * 5 4 2 9 9 C 1.38244 * 119.97576 * 269.72890 * 8 5 4 10 10 C 1.38199 * 120.02945 * 179.72513 * 9 8 5 11 11 C 1.38460 * 119.96952 * 0.56793 * 10 9 8 12 12 F 1.35105 * 120.02520 * 179.68586 * 11 10 9 13 13 C 1.38456 * 119.95131 * 359.70668 * 11 10 9 14 14 C 1.38201 * 119.97470 * 359.97438 * 13 11 10 15 15 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 16 16 O 1.21296 * 120.00265 * 120.00507 * 15 2 1 17 17 N 1.34780 * 120.00249 * 299.99993 * 15 2 1 18 18 C 1.37097 * 120.00420 * 180.02562 * 17 15 2 19 19 H 1.08000 * 119.99621 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00026 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00065 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99697 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47178 * 90.00018 * 22 20 18 24 24 H 1.48504 * 109.47095 * 209.99826 * 22 20 18 25 25 H 1.48498 * 109.47247 * 330.00021 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.08006 * 119.98455 * 359.97438 * 9 8 5 32 32 H 1.07999 * 120.01634 * 180.25113 * 10 9 8 33 33 H 1.08003 * 120.01885 * 179.97438 * 13 11 10 34 34 H 1.07998 * 119.98893 * 180.02562 * 14 13 11 35 35 H 0.96998 * 119.99818 * 0.02562 * 17 15 2 36 36 H 0.96999 * 119.99964 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 16 1.5602 0.2155 -2.7266 6 8 0.1521 0.1682 -2.9115 7 8 2.2660 1.4474 -2.7870 8 6 2.2061 -0.7224 -4.0710 9 6 3.4807 -0.4675 -4.5417 10 6 3.9906 -1.2063 -5.5924 11 6 3.2199 -2.1943 -6.1814 12 9 3.7148 -2.9130 -7.2129 13 6 1.9413 -2.4450 -5.7129 14 6 1.4360 -1.7093 -4.6577 15 6 2.0323 -0.7104 1.2305 16 8 2.7297 -1.6965 1.1193 17 7 1.7067 -0.2499 2.4546 18 6 2.1641 -0.8958 3.5741 19 1 2.7857 -1.7734 3.4750 20 6 1.8280 -0.4213 4.8360 21 7 1.0713 0.6462 4.9565 22 14 2.4507 -1.3019 6.3612 23 1 3.7585 -0.7265 6.7658 24 1 1.4722 -1.1315 7.4653 25 1 2.6163 -2.7476 6.0652 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 4.0798 0.3068 -4.0854 32 1 4.9879 -1.0097 -5.9573 33 1 1.3390 -3.2151 -6.1718 34 1 0.4389 -1.9049 -4.2918 35 1 1.1488 0.5386 2.5436 36 1 0.8369 0.9776 5.8375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131428600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:15 Heat of formation + Delta-G solvation = -132.092538 kcal Electronic energy + Delta-G solvation = -23456.947269 eV Core-core repulsion = 19561.928522 eV Total energy + Delta-G solvation = -3895.018747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.44116 -39.30102 -38.67818 -37.15544 -36.00347 -34.47055 -33.79582 -31.63457 -31.28940 -31.17665 -27.48482 -25.33710 -23.58723 -23.53628 -22.72074 -19.37254 -18.92817 -18.42905 -18.01511 -17.55510 -16.97782 -16.60137 -16.09482 -15.66033 -15.31105 -15.08889 -14.71321 -14.58914 -14.15429 -14.05310 -13.73171 -13.66776 -13.20448 -12.99133 -12.80384 -12.75094 -12.34029 -12.04226 -11.64311 -11.60047 -11.56052 -11.32080 -11.19289 -11.09662 -10.92349 -10.55962 -10.44540 -10.26575 -9.60863 -9.60762 -9.50438 -8.50006 -8.07199 -6.50136 -3.91764 -0.06380 0.34411 0.75710 2.75370 2.91913 3.12203 3.22282 3.27505 3.69700 3.75131 3.76442 3.99346 4.10865 4.30447 4.41146 4.59646 4.77149 4.78291 4.82673 5.02224 5.21498 5.22583 5.37034 5.41239 5.56488 5.61837 5.64882 5.67779 5.80833 5.91808 6.12297 6.30211 6.33272 6.49781 7.47325 7.95332 8.49030 9.07404 9.43048 9.92498 10.67074 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.002926 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.971767 B = 9566.725750 C =10098.254512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 H 0.098 0.902 4 C -0.566 4.566 5 S 2.491 3.509 6 O -0.934 6.934 7 O -0.937 6.937 8 C -0.671 4.671 9 C 0.007 3.993 10 C -0.176 4.176 11 C 0.150 3.850 12 F -0.132 7.132 13 C -0.176 4.176 14 C 0.008 3.992 15 C 0.450 3.550 16 O -0.593 6.593 17 N -0.553 5.553 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.932 3.068 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.395 0.605 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 -1.900 -19.046 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.118 4.118 3 H 0.116 0.884 4 C -0.698 4.698 5 S 2.672 3.328 6 O -0.931 6.931 7 O -0.934 6.934 8 C -0.757 4.757 9 C -0.012 4.012 10 C -0.195 4.195 11 C 0.130 3.870 12 F -0.110 7.110 13 C -0.196 4.196 14 C -0.011 4.011 15 C 0.234 3.766 16 O -0.479 6.479 17 N -0.188 5.188 18 C -0.434 4.434 19 H 0.122 0.878 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.758 3.242 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.194 1.194 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.229 0.771 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.689 -1.726 -19.081 19.172 hybrid contribution 0.600 -0.877 0.497 1.173 sum 1.288 -2.604 -18.584 18.810 Atomic orbital electron populations 1.22265 0.92628 1.04219 1.04161 1.20911 0.97542 1.00176 0.93124 0.88411 1.30014 1.13200 1.13873 1.12693 1.05731 0.75106 0.75739 0.76210 1.93554 1.27999 1.86518 1.85024 1.93569 1.74560 1.39117 1.86185 1.30838 1.05752 1.16084 1.23001 1.20902 0.92519 0.95162 0.92618 1.21296 1.01587 0.97474 0.99167 1.18013 0.92834 0.90814 0.85325 1.91545 1.87690 1.76148 1.55665 1.21295 0.95008 1.03330 0.99936 1.20893 0.98835 0.89584 0.91808 1.19348 0.86037 0.87348 0.83852 1.90512 1.42613 1.28529 1.86278 1.41847 1.45262 1.27514 1.04191 1.19734 1.29531 1.11103 0.83043 0.87769 1.25296 0.96654 0.96416 0.99375 1.69605 1.36099 1.22707 1.25311 0.85837 0.78368 0.79704 0.80260 1.20305 1.20824 1.19368 0.91041 0.90650 0.90386 0.83875 0.84053 0.82851 0.83622 0.83637 0.82805 0.77140 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.78 37.16 0.33 -2.32 16 2 C -0.09 -1.57 2.72 -91.78 -0.25 -1.82 16 3 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 4 C -0.57 -7.67 4.77 37.15 0.18 -7.50 16 5 S 2.49 30.72 4.81 -107.50 -0.52 30.20 16 6 O -0.93 -12.96 14.87 -57.54 -0.86 -13.81 16 7 O -0.94 -13.77 17.12 -57.54 -0.98 -14.75 16 8 C -0.67 -7.21 5.66 -39.58 -0.22 -7.44 16 9 C 0.01 0.07 9.47 -39.59 -0.37 -0.31 16 10 C -0.18 -1.58 10.03 -39.51 -0.40 -1.98 16 11 C 0.15 1.42 7.30 -39.42 -0.29 1.13 16 12 F -0.13 -1.28 17.27 2.25 0.04 -1.24 16 13 C -0.18 -1.56 10.03 -39.51 -0.40 -1.96 16 14 C 0.01 0.07 9.47 -39.59 -0.37 -0.30 16 15 C 0.45 10.11 7.11 -10.98 -0.08 10.03 16 16 O -0.59 -15.17 15.50 5.54 0.09 -15.08 16 17 N -0.55 -13.55 5.18 -10.96 -0.06 -13.61 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 22 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.02 5.61 -51.93 -0.29 0.73 16 28 H 0.08 1.18 7.56 -51.93 -0.39 0.78 16 29 H 0.14 1.85 7.95 -51.93 -0.41 1.44 16 30 H 0.14 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.15 1.28 7.56 -52.48 -0.40 0.89 16 32 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.15 1.21 7.57 -52.49 -0.40 0.82 16 35 H 0.39 9.22 7.32 -40.82 -0.30 8.93 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -33.75 328.75 -7.57 -41.32 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.81 Total: 9.89 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -2.12 Total: -20.28 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.67 Total: -36.64 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.75 Total: -43.65 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 30.72 SS G_CDS: -0.52 Total: 30.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.75 -7.57 -41.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131428600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.777 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds