Wall clock time and date at job start Fri Apr 10 2020 18:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 S 1.81399 * 109.47175 * 65.00000 * 4 2 1 6 6 O 1.42102 * 110.54586 * 291.62647 * 5 4 2 7 7 O 1.42106 * 110.54465 * 68.37730 * 5 4 2 8 8 C 1.76195 * 104.45330 * 180.02562 * 5 4 2 9 9 C 1.38244 * 119.97576 * 269.72890 * 8 5 4 10 10 C 1.38199 * 120.02945 * 179.72513 * 9 8 5 11 11 C 1.38460 * 119.96952 * 0.56793 * 10 9 8 12 12 F 1.35105 * 120.02520 * 179.68586 * 11 10 9 13 13 C 1.38456 * 119.95131 * 359.70668 * 11 10 9 14 14 C 1.38201 * 119.97470 * 359.97438 * 13 11 10 15 15 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 16 16 O 1.21296 * 120.00265 * 120.00507 * 15 2 1 17 17 N 1.34780 * 120.00249 * 299.99993 * 15 2 1 18 18 C 1.37097 * 120.00420 * 180.02562 * 17 15 2 19 19 H 1.08000 * 119.99621 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00026 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00065 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99697 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47178 * 90.00018 * 22 20 18 24 24 H 1.48504 * 109.47095 * 209.99826 * 22 20 18 25 25 H 1.48498 * 109.47247 * 330.00021 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.08006 * 119.98455 * 359.97438 * 9 8 5 32 32 H 1.07999 * 120.01634 * 180.25113 * 10 9 8 33 33 H 1.08003 * 120.01885 * 179.97438 * 13 11 10 34 34 H 1.07998 * 119.98893 * 180.02562 * 14 13 11 35 35 H 0.96998 * 119.99818 * 0.02562 * 17 15 2 36 36 H 0.96999 * 119.99964 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 16 1.5602 0.2155 -2.7266 6 8 0.1521 0.1682 -2.9115 7 8 2.2660 1.4474 -2.7870 8 6 2.2061 -0.7224 -4.0710 9 6 3.4807 -0.4675 -4.5417 10 6 3.9906 -1.2063 -5.5924 11 6 3.2199 -2.1943 -6.1814 12 9 3.7148 -2.9130 -7.2129 13 6 1.9413 -2.4450 -5.7129 14 6 1.4360 -1.7093 -4.6577 15 6 2.0323 -0.7104 1.2305 16 8 2.7297 -1.6965 1.1193 17 7 1.7067 -0.2499 2.4546 18 6 2.1641 -0.8958 3.5741 19 1 2.7857 -1.7734 3.4750 20 6 1.8280 -0.4213 4.8360 21 7 1.0713 0.6462 4.9565 22 14 2.4507 -1.3019 6.3612 23 1 3.7585 -0.7265 6.7658 24 1 1.4722 -1.1315 7.4653 25 1 2.6163 -2.7476 6.0652 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 4.0798 0.3068 -4.0854 32 1 4.9879 -1.0097 -5.9573 33 1 1.3390 -3.2151 -6.1718 34 1 0.4389 -1.9049 -4.2918 35 1 1.1488 0.5386 2.5436 36 1 0.8369 0.9776 5.8375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131428600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:14 Heat of formation + Delta-G solvation = -155.512191 kcal Electronic energy + Delta-G solvation = -23457.962821 eV Core-core repulsion = 19561.928522 eV Total energy + Delta-G solvation = -3896.034299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.16755 -40.44958 -40.01794 -38.22986 -37.09219 -36.19855 -35.44392 -33.22635 -32.33046 -31.94467 -28.68775 -27.20436 -24.50059 -24.28769 -24.08676 -20.81511 -20.15816 -19.87522 -19.24288 -18.58867 -17.89516 -17.73784 -16.91492 -16.79916 -16.68856 -16.47927 -15.92538 -15.91100 -15.72571 -14.89413 -14.71172 -14.57075 -14.45463 -14.40601 -14.00096 -13.73241 -13.58638 -13.50768 -13.11845 -12.94835 -12.77635 -12.58102 -12.37387 -12.27022 -12.24919 -12.11843 -12.08744 -11.66294 -11.53076 -10.35652 -10.30210 -10.24784 -10.04701 -8.48456 -5.97939 -1.05301 -0.44680 0.06374 1.37562 1.42741 1.55090 1.82415 1.98220 2.14398 2.29086 2.75892 2.99326 3.07747 3.17123 3.19055 3.39248 3.56252 3.77559 3.79892 4.01757 4.10326 4.17819 4.34798 4.50462 4.53571 4.66970 4.76477 4.80673 4.85199 4.93262 4.96759 5.02255 5.24395 5.40439 5.63993 5.96638 6.54490 7.08538 7.51427 8.04334 8.68710 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.002926 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.971767 B = 9566.725750 C =10098.254512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 H 0.114 0.886 4 C -0.574 4.574 5 S 2.522 3.478 6 O -0.947 6.947 7 O -0.960 6.960 8 C -0.678 4.678 9 C -0.005 4.005 10 C -0.176 4.176 11 C 0.141 3.859 12 F -0.134 7.134 13 C -0.175 4.175 14 C -0.001 4.001 15 C 0.450 3.550 16 O -0.627 6.627 17 N -0.566 5.566 18 C -0.338 4.338 19 H 0.083 0.917 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.398 0.602 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 -2.163 -20.050 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.116 4.116 3 H 0.132 0.868 4 C -0.704 4.704 5 S 2.705 3.295 6 O -0.945 6.945 7 O -0.958 6.958 8 C -0.766 4.766 9 C -0.024 4.024 10 C -0.195 4.195 11 C 0.122 3.878 12 F -0.112 7.112 13 C -0.195 4.195 14 C -0.020 4.020 15 C 0.236 3.764 16 O -0.514 6.514 17 N -0.201 5.201 18 C -0.467 4.467 19 H 0.101 0.899 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.187 0.813 35 H 0.232 0.768 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.599 -1.960 -20.061 20.166 hybrid contribution 0.651 -0.837 0.672 1.256 sum 1.250 -2.798 -19.389 19.630 Atomic orbital electron populations 1.22297 0.91311 1.04657 1.04992 1.20918 0.98654 1.00628 0.91448 0.86768 1.30108 1.13570 1.14531 1.12219 1.04604 0.74310 0.74950 0.75656 1.93526 1.29059 1.86738 1.85137 1.93536 1.75010 1.40703 1.86502 1.30519 1.06577 1.16903 1.22629 1.21138 0.92429 0.95724 0.93088 1.21551 1.02545 0.96851 0.98584 1.18223 0.93275 0.90960 0.85358 1.91544 1.87744 1.76192 1.55740 1.21574 0.95008 1.03444 0.99430 1.21164 0.99503 0.89277 0.92016 1.20330 0.84493 0.86713 0.84865 1.90480 1.43794 1.30092 1.87066 1.41931 1.45887 1.27806 1.04526 1.19723 1.30784 1.11487 0.84700 0.89901 1.26066 0.96481 0.96976 1.01604 1.69667 1.36467 1.23407 1.26247 0.84919 0.78175 0.78339 0.76866 1.19640 1.19619 1.19599 0.90876 0.88672 0.90700 0.83530 0.83066 0.81782 0.81440 0.81279 0.81273 0.76761 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.14 8.78 71.98 0.63 -4.51 16 2 C -0.09 -3.08 2.72 -11.54 -0.03 -3.11 16 3 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 4 C -0.57 -15.07 4.77 71.98 0.34 -14.72 16 5 S 2.52 58.68 4.81 -56.49 -0.27 58.41 16 6 O -0.95 -24.64 14.87 -127.65 -1.90 -26.54 16 7 O -0.96 -27.06 17.12 -127.65 -2.19 -29.25 16 8 C -0.68 -13.43 5.66 22.27 0.13 -13.31 16 9 C -0.01 -0.09 9.47 22.26 0.21 0.12 16 10 C -0.18 -2.80 10.03 22.31 0.22 -2.58 16 11 C 0.14 2.39 7.30 22.37 0.16 2.55 16 12 F -0.13 -2.33 17.27 44.97 0.78 -1.55 16 13 C -0.18 -2.69 10.03 22.31 0.22 -2.47 16 14 C 0.00 -0.01 9.47 22.26 0.21 0.20 16 15 C 0.45 20.47 7.11 87.66 0.62 21.09 16 16 O -0.63 -32.61 15.50 -3.08 -0.05 -32.66 16 17 N -0.57 -28.28 5.18 -306.98 -1.59 -29.87 16 18 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 21 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 22 Si 0.99 41.89 29.55 68.60 2.03 43.91 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.42 5.61 -2.39 -0.01 2.41 16 28 H 0.07 2.23 7.56 -2.38 -0.02 2.21 16 29 H 0.15 3.72 7.95 -2.39 -0.02 3.70 16 30 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.16 2.50 7.56 -2.91 -0.02 2.48 16 32 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.17 2.28 7.57 -2.91 -0.02 2.26 16 35 H 0.40 18.96 7.32 -92.71 -0.68 18.28 16 36 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -71.73 328.75 1.55 -70.18 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.45 Total: 30.39 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 4.01 Total: -34.69 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.31 Total: -78.20 kcal Atomic # 8 Polarization: -84.32 SS G_CDS: -4.13 Total: -88.45 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 58.68 SS G_CDS: -0.27 Total: 58.41 kcal Total: -71.73 1.55 -70.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131428600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.337 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds